Wall clock time and date at job start Tue Mar 31 2020 04:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.77955 * 2 1 4 4 C 1.54324 * 110.71890 * 123.23889 * 2 1 3 5 5 N 1.47020 * 107.39983 * 140.47837 * 4 2 1 6 6 C 1.36946 * 125.64749 * 181.10549 * 5 4 2 7 7 H 1.08000 * 119.99920 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99867 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99930 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99829 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47087 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47426 * 119.99468 * 10 8 6 13 13 H 1.48497 * 109.47269 * 239.99725 * 10 8 6 14 14 C 1.47743 * 108.53125 * 1.18235 * 5 4 2 15 15 C 1.54909 * 104.83995 * 335.74644 * 14 5 4 16 16 H 1.09006 * 111.00238 * 155.16698 * 15 14 5 17 17 N 1.46494 * 111.04301 * 279.00829 * 15 14 5 18 18 C 1.34780 * 119.99752 * 267.21576 * 17 15 14 19 19 O 1.21278 * 120.00442 * 359.97438 * 18 17 15 20 20 C 1.50703 * 119.99547 * 179.97438 * 18 17 15 21 21 N 1.46503 * 109.46612 * 179.97438 * 20 18 17 22 22 C 1.36885 * 126.39558 * 90.00285 * 21 20 18 23 23 C 1.34673 * 106.81454 * 179.97438 * 22 21 20 24 24 N 1.34125 * 108.02218 * 0.02562 * 23 22 21 25 25 C 1.30501 * 109.25695 * 359.72655 * 24 23 22 26 26 H 1.08993 * 109.46725 * 298.21689 * 1 2 3 27 27 H 1.09002 * 109.46930 * 58.21518 * 1 2 3 28 28 H 1.08996 * 109.47021 * 178.21404 * 1 2 3 29 29 H 1.09003 * 109.46999 * 181.78711 * 3 2 1 30 30 H 1.08997 * 109.47276 * 301.78407 * 3 2 1 31 31 H 1.08996 * 109.47248 * 61.78898 * 3 2 1 32 32 H 1.09002 * 109.88322 * 259.97367 * 4 2 1 33 33 H 1.09000 * 109.88025 * 20.98532 * 4 2 1 34 34 H 0.96998 * 119.99524 * 180.02562 * 9 8 6 35 35 H 1.09003 * 110.29227 * 216.94505 * 14 5 4 36 36 H 1.08996 * 110.53057 * 94.67717 * 14 5 4 37 37 H 0.96994 * 120.00233 * 87.21085 * 17 15 14 38 38 H 1.08993 * 109.47416 * 299.99904 * 20 18 17 39 39 H 1.08996 * 109.47139 * 60.00603 * 20 18 17 40 40 H 1.07999 * 126.59274 * 0.04155 * 22 21 20 41 41 H 1.08000 * 125.98399 * 180.02562 * 23 22 21 42 42 H 1.07998 * 125.65227 * 180.29674 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2438 -1.5534 0.7416 6 6 4.0005 -2.4008 1.5064 7 1 3.7556 -2.5528 2.5472 8 6 5.0830 -3.0633 0.9441 9 7 5.3817 -2.8776 -0.3242 10 14 6.1155 -4.2185 1.9874 11 1 5.5757 -4.2524 3.3704 12 1 6.0720 -5.5839 1.4051 13 1 7.5201 -3.7373 2.0165 14 6 3.4633 -1.2498 -0.6875 15 6 2.0790 -0.7955 -1.2138 16 1 2.1850 -0.1518 -2.0871 17 7 1.2266 -1.9483 -1.5150 18 6 1.2022 -2.4609 -2.7612 19 8 1.8855 -1.9677 -3.6334 20 6 0.3258 -3.6471 -3.0709 21 7 0.4762 -4.0101 -4.4823 22 6 1.3862 -4.8907 -5.0019 23 6 1.1775 -4.9272 -6.3319 24 7 0.1681 -4.0912 -6.6166 25 6 -0.2606 -3.5425 -5.5129 26 1 -0.3632 0.4859 0.9055 27 1 -0.3633 0.5413 -0.8736 28 1 -0.3633 -1.0271 -0.0320 29 1 3.1621 1.4057 -0.0320 30 1 1.6957 1.9622 -0.8735 31 1 1.7476 1.9425 0.9055 32 1 2.3741 -0.1024 1.9978 33 1 1.3120 -1.4739 1.5792 34 1 6.1379 -3.3409 -0.7172 35 1 3.7960 -2.1426 -1.2169 36 1 4.1936 -0.4486 -0.8002 37 1 0.6799 -2.3426 -0.8176 38 1 0.6203 -4.4897 -2.4453 39 1 -0.7148 -3.3921 -2.8707 40 1 2.1282 -5.4498 -4.4511 41 1 1.7268 -5.5249 -7.0442 42 1 -1.0693 -2.8307 -5.4366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977668738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:31 Heat of formation + Delta-G solvation = 38.729335 kcal Electronic energy + Delta-G solvation = -24197.440942 eV Core-core repulsion = 20792.831252 eV Total energy + Delta-G solvation = -3404.609690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.96776 -41.14895 -39.42619 -35.68075 -34.91739 -34.51218 -32.60382 -30.52379 -30.13106 -28.71111 -27.79940 -27.31143 -25.03936 -22.80643 -22.25933 -21.93666 -21.35549 -20.18019 -18.73184 -18.56304 -18.29263 -17.20807 -16.63474 -16.27421 -15.91447 -15.56643 -15.31754 -15.06359 -14.85259 -14.70574 -14.61444 -14.19041 -14.06188 -13.74401 -13.66636 -13.24458 -13.07257 -13.02381 -12.85073 -12.63412 -12.55976 -12.06203 -11.79617 -11.76237 -11.46803 -11.37150 -11.36290 -10.99046 -10.80847 -10.42931 -9.98661 -9.42412 -8.85836 -7.77438 -5.22023 1.04817 1.44258 1.45782 1.55366 1.56039 1.77787 2.24239 2.38473 2.47889 3.33250 3.57122 3.64679 3.72802 3.83811 3.88075 3.97239 4.04350 4.08208 4.17336 4.42406 4.50645 4.58285 4.73180 4.79115 4.83280 4.89493 4.94277 5.03957 5.11011 5.21004 5.29270 5.30549 5.34571 5.49164 5.53837 5.66233 5.80399 5.80957 6.23971 6.28857 6.58029 7.07919 7.13197 7.25019 7.77982 8.41843 9.23472 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.005333 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.324421 B = 5248.838283 C = 6825.984744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.229 4.229 7 H 0.085 0.915 8 C -0.067 4.067 9 N -0.950 5.950 10 Si 0.974 3.026 11 H -0.262 1.262 12 H -0.294 1.294 13 H -0.300 1.300 14 C 0.154 3.846 15 C 0.139 3.861 16 H 0.077 0.923 17 N -0.686 5.686 18 C 0.492 3.508 19 O -0.581 6.581 20 C 0.093 3.907 21 N -0.445 5.445 22 C -0.054 4.054 23 C -0.053 4.053 24 N -0.535 5.535 25 C 0.189 3.811 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.042 0.958 34 H 0.242 0.758 35 H 0.069 0.931 36 H -0.020 1.020 37 H 0.413 0.587 38 H 0.141 0.859 39 H 0.173 0.827 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.372 0.956 -0.571 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.186 4.186 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.358 4.358 7 H 0.103 0.897 8 C -0.259 4.259 9 N -0.600 5.600 10 Si 0.803 3.197 11 H -0.187 1.187 12 H -0.221 1.221 13 H -0.228 1.228 14 C 0.027 3.973 15 C 0.032 3.968 16 H 0.095 0.905 17 N -0.337 5.337 18 C 0.278 3.722 19 O -0.460 6.460 20 C -0.032 4.032 21 N -0.127 5.127 22 C -0.187 4.187 23 C -0.199 4.199 24 N -0.254 5.254 25 C -0.094 4.094 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.087 0.913 36 H -0.002 1.002 37 H 0.251 0.749 38 H 0.159 0.841 39 H 0.190 0.810 40 H 0.199 0.801 41 H 0.198 0.802 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.057 1.357 -1.795 16.214 hybrid contribution 1.852 -0.792 1.448 2.481 sum -14.205 0.565 -0.347 14.221 Atomic orbital electron populations 1.21689 0.90646 1.02720 1.03019 1.21832 0.97745 0.95089 0.92791 1.21704 0.99817 0.94096 1.02984 1.21659 0.88945 0.93125 0.95018 1.44766 1.31902 1.50233 1.07417 1.19479 1.06537 1.16310 0.93452 0.89672 1.25570 1.00313 1.02680 0.97348 1.70109 1.30111 1.47172 1.12591 0.85063 0.78035 0.78104 0.78464 1.18664 1.22075 1.22756 1.21987 0.91821 0.98102 0.85365 1.22095 0.90920 0.86889 0.96877 0.90523 1.45578 1.45048 1.32422 1.10673 1.21351 0.83027 0.85357 0.82499 1.90764 1.44830 1.62487 1.47943 1.21943 1.03860 0.97225 0.80191 1.45128 1.26818 1.32662 1.08141 1.23023 0.99081 1.00355 0.96279 1.22556 0.99738 1.03192 0.94406 1.70221 1.14250 1.12719 1.28200 1.25558 1.00417 1.02079 0.81308 0.90735 0.91507 0.91472 0.95127 0.91216 0.90416 0.96048 0.94047 0.94844 0.91344 1.00201 0.74950 0.84138 0.80979 0.80143 0.80249 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.16 71.98 0.59 -1.70 16 2 C -0.07 -2.08 0.80 -50.99 -0.04 -2.12 16 3 C -0.13 -3.47 8.44 71.98 0.61 -2.86 16 4 C 0.14 4.87 6.40 86.73 0.56 5.42 16 5 N -0.62 -29.38 3.41 -691.17 -2.35 -31.73 16 6 C -0.23 -12.13 10.28 84.03 0.86 -11.26 16 7 H 0.09 4.29 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 9 N -0.95 -56.92 10.11 21.65 0.22 -56.70 16 10 Si 0.97 44.84 29.55 68.60 2.03 46.87 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 14 C 0.15 7.47 5.29 86.79 0.46 7.93 16 15 C 0.14 4.90 2.67 46.38 0.12 5.02 16 16 H 0.08 2.92 7.44 -2.38 -0.02 2.90 16 17 N -0.69 -19.50 4.52 -435.96 -1.97 -21.47 16 18 C 0.49 14.62 7.90 87.66 0.69 15.31 16 19 O -0.58 -23.99 16.07 -3.02 -0.05 -24.04 16 20 C 0.09 1.74 6.63 85.63 0.57 2.31 16 21 N -0.45 -11.08 2.24 -533.14 -1.19 -12.28 16 22 C -0.05 -1.51 11.58 83.09 0.96 -0.55 16 23 C -0.05 -1.54 11.87 83.52 0.99 -0.54 16 24 N -0.54 -16.60 11.25 -200.31 -2.25 -18.85 16 25 C 0.19 4.77 12.56 180.26 2.26 7.04 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.06 6.34 -2.39 -0.02 1.05 16 29 H 0.03 1.01 7.45 -2.39 -0.02 1.00 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.02 0.78 7.84 -2.39 -0.02 0.76 16 33 H 0.04 1.33 7.82 -2.39 -0.02 1.32 16 34 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.07 3.95 5.89 -2.39 -0.01 3.94 16 36 H -0.02 -1.09 7.72 -2.39 -0.02 -1.11 16 37 H 0.41 9.23 7.13 -92.71 -0.66 8.56 16 38 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.18 4.39 8.06 -2.91 -0.02 4.36 16 42 H 0.23 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -80.01 343.30 3.89 -76.13 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.36 Total: 21.31 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 9.10 Total: 20.77 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -7.55 Total: -141.03 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -80.01 3.89 -76.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977668738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.856 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds