Wall clock time and date at job start Tue Mar 31 2020 04:10:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30858 * 125.42260 * 2 1
4 4 C 1.33314 * 109.68757 * 180.02562 * 3 2 1
5 5 C 1.50704 * 126.10749 * 179.97438 * 4 3 2
6 6 C 1.36664 * 107.78858 * 0.02562 * 4 3 2
7 7 C 1.46759 * 126.84755 * 179.97438 * 6 4 3
8 8 O 1.21679 * 120.00286 * 6.47653 * 7 6 4
9 9 N 1.34778 * 120.00023 * 186.48354 * 7 6 4
10 10 C 1.48215 * 119.97077 * 185.39334 * 9 7 6
11 11 C 1.47136 * 110.20582 * 102.37082 * 10 9 7
12 12 C 1.53804 * 111.83853 * 58.38478 * 11 10 9
13 13 N 1.43464 * 107.95890 * 281.67058 * 12 11 10
14 14 C 1.36941 * 118.94288 * 273.65209 * 13 12 11
15 15 H 1.08000 * 119.99895 * 25.75358 * 14 13 12
16 16 C 1.38810 * 120.00399 * 205.76178 * 14 13 12
17 17 N 1.31619 * 119.99799 * 13.22225 * 16 14 13
18 18 Si 1.86803 * 119.99963 * 193.23156 * 16 14 13
19 19 H 1.48501 * 109.47065 * 89.99529 * 18 16 14
20 20 H 1.48503 * 109.46850 * 209.99493 * 18 16 14
21 21 H 1.48497 * 109.47111 * 329.99239 * 18 16 14
22 22 C 1.48857 * 122.12100 * 93.63374 * 13 12 11
23 23 C 1.43734 * 120.04822 * 5.58048 * 9 7 6
24 24 N 1.34501 * 125.41683 * 180.30779 * 2 1 3
25 25 H 0.97003 * 126.46972 * 359.97438 * 24 2 1
26 26 H 1.09001 * 109.46981 * 89.97750 * 1 2 3
27 27 H 1.08997 * 109.47467 * 209.98316 * 1 2 3
28 28 H 1.09000 * 109.46896 * 329.97635 * 1 2 3
29 29 H 1.09000 * 109.47205 * 270.00369 * 5 4 3
30 30 H 1.09002 * 109.46954 * 29.99997 * 5 4 3
31 31 H 1.08998 * 109.46810 * 149.99955 * 5 4 3
32 32 H 1.09002 * 109.31977 * 342.18792 * 10 9 7
33 33 H 1.09003 * 109.32162 * 222.55065 * 10 9 7
34 34 H 1.09001 * 109.00833 * 178.98707 * 11 10 9
35 35 H 1.08992 * 109.00650 * 297.85844 * 11 10 9
36 36 H 1.08998 * 109.76237 * 41.28374 * 12 11 10
37 37 H 1.08992 * 109.76113 * 162.00544 * 12 11 10
38 38 H 0.97006 * 119.99717 * 180.02562 * 17 16 14
39 39 H 1.08993 * 109.48120 * 80.60250 * 22 13 12
40 40 H 1.08998 * 109.47990 * 200.63492 * 22 13 12
41 41 H 1.09000 * 108.97716 * 150.01277 * 23 9 7
42 42 H 1.08999 * 108.85685 * 31.41956 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2655 1.0664 0.0000
4 6 3.5486 0.7048 -0.0006
5 6 4.7336 1.6359 -0.0013
6 6 3.5976 -0.6609 -0.0015
7 6 4.8028 -1.4984 -0.0029
8 8 5.9000 -0.9858 0.1155
9 7 4.6943 -2.8352 -0.1355
10 6 5.8986 -3.6911 -0.0173
11 6 5.9337 -4.3393 1.3032
12 6 4.6801 -5.1943 1.5544
13 7 3.6076 -4.3119 1.9138
14 6 3.4605 -3.9477 3.2257
15 1 4.3147 -3.9522 3.8864
16 6 2.2133 -3.5730 3.7064
17 7 1.1339 -3.8110 2.9918
18 14 2.0670 -2.7306 5.3672
19 1 2.1640 -1.2598 5.1866
20 1 0.7573 -3.0688 5.9801
21 1 3.1634 -3.1936 6.2554
22 6 2.6497 -3.7791 0.9067
23 6 3.4124 -3.4310 -0.3956
24 7 2.2865 -1.0961 -0.0059
25 1 1.9849 -2.0181 -0.0105
26 1 -0.3633 0.0004 -1.0277
27 1 -0.3634 -0.8901 0.5135
28 1 -0.3633 0.8898 0.5142
29 1 5.0188 1.8603 -1.0291
30 1 4.4697 2.5603 0.5125
31 1 5.5694 1.1606 0.5122
32 1 6.7908 -3.0775 -0.1418
33 1 5.8754 -4.4557 -0.7939
34 1 6.8159 -4.9768 1.3624
35 1 5.9985 -3.5714 2.0739
36 1 4.4195 -5.7413 0.6483
37 1 4.8693 -5.8958 2.3668
38 1 0.2624 -3.5487 3.3275
39 1 1.8906 -4.5316 0.6933
40 1 2.1717 -2.8815 1.2989
41 1 3.5564 -4.3433 -0.9744
42 1 2.8120 -2.7340 -0.9802
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981977997.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:58
Heat of formation + Delta-G solvation = 72.120888 kcal
Electronic energy + Delta-G solvation = -25475.803530 eV
Core-core repulsion = 22072.641806 eV
Total energy + Delta-G solvation = -3403.161724 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.07839 -39.42888 -37.15885 -34.52741 -33.66446 -32.59115 -31.52530 -30.87551
-28.86323 -28.18082 -26.33876 -25.16069 -23.90107 -22.73013 -21.06473 -20.20436
-19.87360 -18.88478 -17.25844 -16.90351 -16.07613 -15.86385 -15.42887 -14.99918
-14.31090 -14.04703 -13.90079 -13.55315 -13.39386 -13.15111 -12.90357 -12.75437
-12.50398 -12.42903 -12.21568 -12.12398 -11.92721 -11.75875 -11.47607 -11.11245
-10.87112 -10.68113 -10.45182 -10.34281 -10.07205 -9.97273 -9.86569 -9.53754
-9.38553 -8.63638 -8.30915 -7.89477 -6.87062 -5.96396 -3.38564 1.69790
3.08871 3.21865 3.30719 3.37331 3.39927 3.52481 3.75658 4.38161
4.56334 4.88584 4.95556 5.19972 5.25049 5.40892 5.44903 5.48694
5.59312 5.60670 5.65397 5.76075 5.81783 5.87790 5.97328 6.04148
6.11677 6.17301 6.30362 6.31820 6.39482 6.44522 6.69200 6.70546
6.87926 6.96832 7.05451 7.15779 7.58090 7.66906 7.78263 8.26555
8.28768 8.54018 9.03713 9.70375 10.14959 11.12420
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.011907 B = 0.008748 C = 0.006431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2351.084594 B = 3200.100770 C = 4352.901356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C 0.230 3.770
3 N -0.502 5.502
4 C 0.085 3.915
5 C -0.072 4.072
6 C -0.080 4.080
7 C 0.602 3.398
8 O -0.541 6.541
9 N -0.585 5.585
10 C 0.131 3.869
11 C -0.172 4.172
12 C 0.162 3.838
13 N -0.585 5.585
14 C -0.251 4.251
15 H 0.067 0.933
16 C 0.005 3.995
17 N -0.914 5.914
18 Si 0.901 3.099
19 H -0.286 1.286
20 H -0.289 1.289
21 H -0.278 1.278
22 C 0.147 3.853
23 C 0.057 3.943
24 N -0.547 5.547
25 H 0.434 0.566
26 H 0.081 0.919
27 H 0.082 0.918
28 H 0.091 0.909
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.088 0.912
32 H 0.082 0.918
33 H 0.063 0.937
34 H 0.059 0.941
35 H 0.069 0.931
36 H 0.034 0.966
37 H 0.050 0.950
38 H 0.254 0.746
39 H 0.049 0.951
40 H 0.083 0.917
41 H 0.074 0.926
42 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.284 1.692 -9.182 9.424
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.034 4.034
3 N -0.223 5.223
4 C -0.050 4.050
5 C -0.130 4.130
6 C -0.197 4.197
7 C 0.391 3.609
8 O -0.419 6.419
9 N -0.316 5.316
10 C 0.010 3.990
11 C -0.213 4.213
12 C 0.033 3.967
13 N -0.307 5.307
14 C -0.381 4.381
15 H 0.085 0.915
16 C -0.193 4.193
17 N -0.559 5.559
18 Si 0.731 3.269
19 H -0.213 1.213
20 H -0.216 1.216
21 H -0.203 1.203
22 C 0.020 3.980
23 C -0.069 4.069
24 N -0.162 5.162
25 H 0.286 0.714
26 H 0.100 0.900
27 H 0.100 0.900
28 H 0.110 0.890
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.107 0.893
32 H 0.101 0.899
33 H 0.081 0.919
34 H 0.078 0.922
35 H 0.088 0.912
36 H 0.053 0.947
37 H 0.068 0.932
38 H 0.064 0.936
39 H 0.067 0.933
40 H 0.101 0.899
41 H 0.093 0.907
42 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 1.420 2.694 -9.086 9.583
hybrid contribution -0.247 -0.941 1.027 1.414
sum 1.173 1.753 -8.059 8.331
Atomic orbital electron populations
1.20277 0.84654 1.04768 1.03468 1.23340 0.95834 0.82118 1.02100
1.69988 1.01552 1.28670 1.22120 1.20952 0.93117 0.90248 1.00724
1.20225 0.93433 0.97014 1.02338 1.20807 0.84178 0.95100 1.19583
1.16811 0.86808 0.81239 0.76025 1.90717 1.26382 1.72969 1.51829
1.47253 1.08590 1.05403 1.70327 1.20597 0.87475 0.93066 0.97839
1.21896 1.00552 1.01117 0.97722 1.20330 0.87300 0.91188 0.97834
1.43489 1.31352 1.51731 1.04108 1.19225 0.92935 1.39638 0.86278
0.91514 1.24970 0.95287 1.00931 0.98086 1.69958 0.97299 1.49995
1.38676 0.86296 0.77160 0.79774 0.83702 1.21340 1.21556 1.20334
1.22213 0.90628 0.99657 0.85485 1.22639 0.85581 0.98218 1.00476
1.44703 1.05952 1.11401 1.54158 0.71408 0.90042 0.89956 0.89047
0.91406 0.91471 0.89290 0.89943 0.91900 0.92246 0.91212 0.94722
0.93215 0.93585 0.93325 0.89940 0.90722 0.91949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.91 10.51 36.01 0.38 -0.53 16
2 C 0.23 3.94 8.12 -155.61 -1.26 2.68 16
3 N -0.50 -9.45 11.20 -6.84 -0.08 -9.53 16
4 C 0.08 1.63 7.14 -82.52 -0.59 1.04 16
5 C -0.07 -1.19 9.95 36.01 0.36 -0.83 16
6 C -0.08 -1.58 6.62 -82.14 -0.54 -2.13 16
7 C 0.60 12.14 7.63 -12.82 -0.10 12.04 16
8 O -0.54 -11.61 14.22 5.21 0.07 -11.53 16
9 N -0.58 -10.61 2.44 -178.09 -0.44 -11.04 16
10 C 0.13 2.13 5.73 -5.91 -0.03 2.09 16
11 C -0.17 -2.98 5.64 -29.13 -0.16 -3.14 16
12 C 0.16 3.10 5.63 -5.23 -0.03 3.07 16
13 N -0.59 -13.39 2.53 -172.00 -0.44 -13.83 16
14 C -0.25 -6.59 9.27 -15.06 -0.14 -6.73 16
15 H 0.07 1.79 7.86 -52.49 -0.41 1.37 16
16 C 0.00 0.13 4.98 -17.43 -0.09 0.04 16
17 N -0.91 -24.26 10.87 55.49 0.60 -23.65 16
18 Si 0.90 21.69 29.57 -169.99 -5.03 16.66 16
19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
22 C 0.15 3.05 4.44 -1.75 -0.01 3.04 16
23 C 0.06 0.96 4.73 -4.52 -0.02 0.94 16
24 N -0.55 -9.83 4.44 -7.02 -0.03 -9.86 16
25 H 0.43 7.48 3.37 -40.82 -0.14 7.35 16
26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16
29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
31 H 0.09 1.56 6.37 -51.93 -0.33 1.23 16
32 H 0.08 1.36 7.08 -51.93 -0.37 0.99 16
33 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.07 1.45 7.90 -51.93 -0.41 1.04 16
36 H 0.03 0.60 7.59 -51.93 -0.39 0.21 16
37 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16
38 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16
39 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16
40 H 0.08 1.89 4.34 -51.93 -0.23 1.66 16
41 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16
42 H 0.06 0.97 5.04 -51.93 -0.26 0.71 16
LS Contribution 325.50 15.07 4.91 4.91
Total: -1.00 -30.91 325.50 -8.53 -39.43
By element:
Atomic # 1 Polarization: 12.71 SS G_CDS: -5.86 Total: 6.85 kcal
Atomic # 6 Polarization: 13.83 SS G_CDS: -2.24 Total: 11.59 kcal
Atomic # 7 Polarization: -67.53 SS G_CDS: -0.38 Total: -67.91 kcal
Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.53 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -30.91 -8.53 -39.43 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981977997.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.553 kcal
(2) G-P(sol) polarization free energy of solvation -30.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds