Wall clock time and date at job start Tue Mar 31 2020 04:10:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30858 * 125.42260 * 2 1
4 4 C 1.33314 * 109.68757 * 180.02562 * 3 2 1
5 5 C 1.50704 * 126.10749 * 179.97438 * 4 3 2
6 6 C 1.36664 * 107.78858 * 0.02562 * 4 3 2
7 7 C 1.46759 * 126.84755 * 179.97438 * 6 4 3
8 8 O 1.21679 * 120.00286 * 6.47653 * 7 6 4
9 9 N 1.34778 * 120.00023 * 186.48354 * 7 6 4
10 10 C 1.48215 * 119.97077 * 185.39334 * 9 7 6
11 11 C 1.47136 * 110.20582 * 102.37082 * 10 9 7
12 12 C 1.53804 * 111.83853 * 58.38478 * 11 10 9
13 13 N 1.43464 * 107.95890 * 281.67058 * 12 11 10
14 14 C 1.36941 * 118.94288 * 273.65209 * 13 12 11
15 15 H 1.08000 * 119.99895 * 25.75358 * 14 13 12
16 16 C 1.38810 * 120.00399 * 205.76178 * 14 13 12
17 17 N 1.31619 * 119.99799 * 13.22225 * 16 14 13
18 18 Si 1.86803 * 119.99963 * 193.23156 * 16 14 13
19 19 H 1.48501 * 109.47065 * 89.99529 * 18 16 14
20 20 H 1.48503 * 109.46850 * 209.99493 * 18 16 14
21 21 H 1.48497 * 109.47111 * 329.99239 * 18 16 14
22 22 C 1.48857 * 122.12100 * 93.63374 * 13 12 11
23 23 C 1.43734 * 120.04822 * 5.58048 * 9 7 6
24 24 N 1.34501 * 125.41683 * 180.30779 * 2 1 3
25 25 H 0.97003 * 126.46972 * 359.97438 * 24 2 1
26 26 H 1.09001 * 109.46981 * 89.97750 * 1 2 3
27 27 H 1.08997 * 109.47467 * 209.98316 * 1 2 3
28 28 H 1.09000 * 109.46896 * 329.97635 * 1 2 3
29 29 H 1.09000 * 109.47205 * 270.00369 * 5 4 3
30 30 H 1.09002 * 109.46954 * 29.99997 * 5 4 3
31 31 H 1.08998 * 109.46810 * 149.99955 * 5 4 3
32 32 H 1.09002 * 109.31977 * 342.18792 * 10 9 7
33 33 H 1.09003 * 109.32162 * 222.55065 * 10 9 7
34 34 H 1.09001 * 109.00833 * 178.98707 * 11 10 9
35 35 H 1.08992 * 109.00650 * 297.85844 * 11 10 9
36 36 H 1.08998 * 109.76237 * 41.28374 * 12 11 10
37 37 H 1.08992 * 109.76113 * 162.00544 * 12 11 10
38 38 H 0.97006 * 119.99717 * 180.02562 * 17 16 14
39 39 H 1.08993 * 109.48120 * 80.60250 * 22 13 12
40 40 H 1.08998 * 109.47990 * 200.63492 * 22 13 12
41 41 H 1.09000 * 108.97716 * 150.01277 * 23 9 7
42 42 H 1.08999 * 108.85685 * 31.41956 * 23 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2655 1.0664 0.0000
4 6 3.5486 0.7048 -0.0006
5 6 4.7336 1.6359 -0.0013
6 6 3.5976 -0.6609 -0.0015
7 6 4.8028 -1.4984 -0.0029
8 8 5.9000 -0.9858 0.1155
9 7 4.6943 -2.8352 -0.1355
10 6 5.8986 -3.6911 -0.0173
11 6 5.9337 -4.3393 1.3032
12 6 4.6801 -5.1943 1.5544
13 7 3.6076 -4.3119 1.9138
14 6 3.4605 -3.9477 3.2257
15 1 4.3147 -3.9522 3.8864
16 6 2.2133 -3.5730 3.7064
17 7 1.1339 -3.8110 2.9918
18 14 2.0670 -2.7306 5.3672
19 1 2.1640 -1.2598 5.1866
20 1 0.7573 -3.0688 5.9801
21 1 3.1634 -3.1936 6.2554
22 6 2.6497 -3.7791 0.9067
23 6 3.4124 -3.4310 -0.3956
24 7 2.2865 -1.0961 -0.0059
25 1 1.9849 -2.0181 -0.0105
26 1 -0.3633 0.0004 -1.0277
27 1 -0.3634 -0.8901 0.5135
28 1 -0.3633 0.8898 0.5142
29 1 5.0188 1.8603 -1.0291
30 1 4.4697 2.5603 0.5125
31 1 5.5694 1.1606 0.5122
32 1 6.7908 -3.0775 -0.1418
33 1 5.8754 -4.4557 -0.7939
34 1 6.8159 -4.9768 1.3624
35 1 5.9985 -3.5714 2.0739
36 1 4.4195 -5.7413 0.6483
37 1 4.8693 -5.8958 2.3668
38 1 0.2624 -3.5487 3.3275
39 1 1.8906 -4.5316 0.6933
40 1 2.1717 -2.8815 1.2989
41 1 3.5564 -4.3433 -0.9744
42 1 2.8120 -2.7340 -0.9802
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981977997.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:57
Heat of formation + Delta-G solvation = 53.850474 kcal
Electronic energy + Delta-G solvation = -25476.595794 eV
Core-core repulsion = 22072.641806 eV
Total energy + Delta-G solvation = -3403.953989 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-43.46687 -40.88793 -38.74331 -36.16553 -35.14998 -33.95847 -33.13454 -32.42339
-30.09992 -29.72737 -27.87064 -26.63584 -25.62525 -24.18619 -22.40995 -21.77106
-21.36013 -20.30543 -18.84948 -18.52204 -17.58594 -17.35067 -16.88561 -16.65266
-15.97565 -15.58772 -15.43758 -15.09244 -14.83326 -14.60904 -14.15879 -14.09074
-13.97243 -13.85844 -13.46349 -13.33338 -13.30976 -13.14131 -13.04907 -12.92695
-12.59456 -12.38930 -12.18865 -11.91050 -11.77645 -11.52634 -11.41478 -10.96352
-10.88333 -10.56134 -9.78695 -9.29358 -8.70988 -7.94573 -5.36323 0.26198
1.35081 1.40498 1.44606 1.68825 1.84981 2.16361 2.27948 2.43279
3.19385 3.30426 3.48580 3.54277 3.92524 4.00944 4.11218 4.13939
4.14436 4.38934 4.41497 4.52862 4.53836 4.69136 4.72916 4.77332
4.81726 4.87584 4.96633 5.00233 5.04766 5.09788 5.11739 5.21644
5.41841 5.44663 5.59743 5.60065 5.68087 6.24102 6.31745 6.35415
6.88097 7.05654 7.11450 7.86509 8.23960 9.10244
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.011907 B = 0.008748 C = 0.006431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2351.084594 B = 3200.100770 C = 4352.901356
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.233 3.767
3 N -0.522 5.522
4 C 0.072 3.928
5 C -0.068 4.068
6 C -0.109 4.109
7 C 0.593 3.407
8 O -0.564 6.564
9 N -0.584 5.584
10 C 0.128 3.872
11 C -0.157 4.157
12 C 0.157 3.843
13 N -0.600 5.600
14 C -0.257 4.257
15 H 0.051 0.949
16 C -0.034 4.034
17 N -0.923 5.923
18 Si 0.943 3.057
19 H -0.300 1.300
20 H -0.286 1.286
21 H -0.277 1.277
22 C 0.151 3.849
23 C 0.066 3.934
24 N -0.548 5.548
25 H 0.436 0.564
26 H 0.113 0.887
27 H 0.085 0.915
28 H 0.100 0.900
29 H 0.085 0.915
30 H 0.078 0.922
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.103 0.897
34 H 0.092 0.908
35 H 0.025 0.975
36 H 0.063 0.937
37 H 0.040 0.960
38 H 0.252 0.748
39 H 0.038 0.962
40 H 0.059 0.941
41 H 0.108 0.892
42 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.049 1.100 -10.657 10.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.031 4.031
3 N -0.244 5.244
4 C -0.063 4.063
5 C -0.125 4.125
6 C -0.225 4.225
7 C 0.383 3.617
8 O -0.444 6.444
9 N -0.314 5.314
10 C 0.007 3.993
11 C -0.198 4.198
12 C 0.030 3.970
13 N -0.322 5.322
14 C -0.388 4.388
15 H 0.069 0.931
16 C -0.230 4.230
17 N -0.569 5.569
18 Si 0.773 3.227
19 H -0.228 1.228
20 H -0.212 1.212
21 H -0.202 1.202
22 C 0.025 3.975
23 C -0.060 4.060
24 N -0.163 5.163
25 H 0.288 0.712
26 H 0.131 0.869
27 H 0.103 0.897
28 H 0.119 0.881
29 H 0.103 0.897
30 H 0.097 0.903
31 H 0.092 0.908
32 H 0.097 0.903
33 H 0.121 0.879
34 H 0.110 0.890
35 H 0.044 0.956
36 H 0.081 0.919
37 H 0.058 0.942
38 H 0.061 0.939
39 H 0.056 0.944
40 H 0.077 0.923
41 H 0.126 0.874
42 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 1.198 2.065 -10.574 10.840
hybrid contribution -0.172 -0.768 1.496 1.690
sum 1.026 1.297 -9.078 9.227
Atomic orbital electron populations
1.20499 0.81492 1.05316 1.05701 1.24265 0.97553 0.81493 0.99824
1.70028 1.01563 1.29415 1.23354 1.21441 0.94018 0.90734 1.00115
1.20228 0.92086 0.96821 1.03398 1.20911 0.84779 0.95489 1.21313
1.17026 0.86711 0.82069 0.75943 1.90688 1.27139 1.73560 1.53049
1.47391 1.09574 1.05004 1.69471 1.20789 0.86699 0.93544 0.98242
1.21715 1.00984 1.00047 0.97042 1.20504 0.86890 0.90996 0.98651
1.43703 1.32409 1.52670 1.03423 1.19309 0.92381 1.39237 0.87900
0.93105 1.25396 0.95445 1.02043 1.00108 1.70032 0.97140 1.50619
1.39144 0.85634 0.77109 0.78105 0.81832 1.22791 1.21169 1.20199
1.22081 0.90564 0.98231 0.86633 1.22524 0.84888 0.99958 0.98587
1.44698 1.05538 1.11697 1.54369 0.71195 0.86872 0.89653 0.88135
0.89655 0.90278 0.90781 0.90265 0.87865 0.88970 0.95561 0.91903
0.94193 0.93882 0.94365 0.92292 0.87425 0.90477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.64 10.51 71.24 0.75 -0.90 16
2 C 0.23 7.72 8.12 138.20 1.12 8.84 16
3 N -0.52 -19.27 11.20 -175.56 -1.97 -21.23 16
4 C 0.07 2.76 7.14 41.97 0.30 3.05 16
5 C -0.07 -2.21 9.95 71.24 0.71 -1.50 16
6 C -0.11 -4.27 6.62 40.01 0.26 -4.01 16
7 C 0.59 23.71 7.63 86.47 0.66 24.37 16
8 O -0.56 -24.35 14.22 -4.28 -0.06 -24.41 16
9 N -0.58 -20.24 2.44 -835.56 -2.04 -22.28 16
10 C 0.13 3.80 5.73 84.23 0.48 4.29 16
11 C -0.16 -5.17 5.64 29.04 0.16 -5.00 16
12 C 0.16 5.72 5.63 87.21 0.49 6.21 16
13 N -0.60 -27.09 2.53 -698.07 -1.77 -28.86 16
14 C -0.26 -13.63 9.27 84.03 0.78 -12.86 16
15 H 0.05 2.79 7.86 -2.91 -0.02 2.77 16
16 C -0.03 -1.80 4.98 84.86 0.42 -1.38 16
17 N -0.92 -49.00 10.87 21.65 0.24 -48.77 16
18 Si 0.94 45.04 29.57 68.60 2.03 47.07 16
19 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16
20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16
21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
22 C 0.15 6.14 4.44 86.56 0.38 6.52 16
23 C 0.07 2.08 4.73 87.53 0.41 2.50 16
24 N -0.55 -19.30 4.44 -176.11 -0.78 -20.08 16
25 H 0.44 14.65 3.37 -92.71 -0.31 14.34 16
26 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16
29 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16
30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16
31 H 0.07 2.63 6.37 -2.39 -0.02 2.62 16
32 H 0.08 2.46 7.08 -2.39 -0.02 2.44 16
33 H 0.10 2.30 8.05 -2.39 -0.02 2.28 16
34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
35 H 0.03 1.08 7.90 -2.39 -0.02 1.06 16
36 H 0.06 1.95 7.59 -2.39 -0.02 1.93 16
37 H 0.04 1.52 8.02 -2.39 -0.02 1.50 16
38 H 0.25 13.08 8.31 -92.70 -0.77 12.31 16
39 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16
40 H 0.06 2.69 4.34 -2.39 -0.01 2.68 16
41 H 0.11 2.70 7.73 -2.39 -0.02 2.68 16
42 H 0.08 2.24 5.04 -2.39 -0.01 2.22 16
Total: -1.00 -67.42 325.50 3.32 -64.11
By element:
Atomic # 1 Polarization: 23.59 SS G_CDS: 0.73 Total: 24.32 kcal
Atomic # 6 Polarization: 23.19 SS G_CDS: 6.94 Total: 30.14 kcal
Atomic # 7 Polarization: -134.90 SS G_CDS: -6.32 Total: -141.23 kcal
Atomic # 8 Polarization: -24.35 SS G_CDS: -0.06 Total: -24.41 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal
Total: -67.42 3.32 -64.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981977997.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.956 kcal
(2) G-P(sol) polarization free energy of solvation -67.421 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.850 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds