Wall clock time and date at job start Tue Mar 31 2020 04:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33316 * 126.10381 * 2 1 4 4 C 1.30853 * 109.68500 * 179.97438 * 3 2 1 5 5 N 1.34492 * 109.16473 * 359.76070 * 4 3 2 6 6 C 1.46498 * 126.47573 * 180.25263 * 5 4 3 7 7 C 1.36661 * 126.10995 * 179.97438 * 2 1 3 8 8 C 1.46762 * 126.84212 * 359.96969 * 7 2 1 9 9 O 1.21684 * 120.00095 * 279.90011 * 8 7 2 10 10 N 1.34772 * 120.00416 * 99.90042 * 8 7 2 11 11 C 1.47424 * 125.64485 * 354.92286 * 10 8 7 12 12 C 1.54904 * 104.83392 * 204.07923 * 11 10 8 13 13 H 1.09002 * 111.04585 * 204.89881 * 12 11 10 14 14 N 1.46505 * 111.00356 * 81.06356 * 12 11 10 15 15 C 1.36932 * 119.99955 * 93.07815 * 14 12 11 16 16 H 1.08007 * 120.00397 * 359.73084 * 15 14 12 17 17 C 1.38809 * 120.00312 * 179.72499 * 15 14 12 18 18 N 1.31621 * 119.99825 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00577 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46827 * 60.00149 * 19 17 15 21 21 H 1.48493 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46865 * 300.00441 * 19 17 15 23 23 C 1.55160 * 101.58311 * 322.99480 * 12 11 10 24 24 C 1.47024 * 125.65363 * 174.86421 * 10 8 7 25 25 H 1.09002 * 109.87861 * 59.57150 * 24 10 8 26 26 C 1.52998 * 109.88313 * 298.41163 * 24 10 8 27 27 H 1.08995 * 109.47462 * 270.00141 * 1 2 3 28 28 H 1.09002 * 109.47363 * 30.01032 * 1 2 3 29 29 H 1.09000 * 109.46712 * 150.00339 * 1 2 3 30 30 H 1.08009 * 125.42265 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47550 * 275.13136 * 6 5 4 32 32 H 1.08996 * 109.47468 * 35.13241 * 6 5 4 33 33 H 1.09003 * 109.47135 * 155.13464 * 6 5 4 34 34 H 1.09000 * 110.37053 * 85.24237 * 11 10 8 35 35 H 1.08999 * 110.36706 * 322.92058 * 11 10 8 36 36 H 0.97005 * 120.00335 * 272.80817 * 14 12 11 37 37 H 0.97001 * 120.00100 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.72573 * 153.86260 * 23 12 11 39 39 H 1.09009 * 110.71398 * 277.13605 * 23 12 11 40 40 H 1.09005 * 109.46790 * 302.18400 * 26 24 10 41 41 H 1.08995 * 109.47376 * 62.18559 * 26 24 10 42 42 H 1.08997 * 109.46892 * 182.18836 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.0771 0.0000 4 6 3.5477 0.7073 0.0006 5 7 3.6122 -0.6361 0.0062 6 6 4.8305 -1.4495 0.0139 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0017 9 8 1.5310 -3.0350 1.0404 10 7 1.8759 -3.2112 -1.1475 11 6 2.1729 -2.6720 -2.4870 12 6 1.4562 -3.6320 -3.4689 13 1 1.9327 -3.6168 -4.4491 14 7 0.0317 -3.3067 -3.5756 15 6 -0.4060 -2.4634 -4.5617 16 1 0.2995 -2.0346 -5.2581 17 6 -1.7564 -2.1596 -4.6664 18 7 -2.6161 -2.6818 -3.8176 19 14 -2.3536 -1.0097 -6.0120 20 1 -2.0103 -1.5806 -7.3394 21 1 -3.8262 -0.8493 -5.9086 22 1 -1.6988 0.3143 -5.8583 23 6 1.6627 -5.0024 -2.7712 24 6 1.5730 -4.6445 -1.2728 25 1 0.5671 -4.8444 -0.9035 26 6 2.5938 -5.4633 -0.4800 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3633 -0.8900 -0.5138 30 1 4.3970 1.3746 0.0011 31 1 5.1874 -1.5790 -1.0078 32 1 5.5973 -0.9500 0.6060 33 1 4.6134 -2.4250 0.4492 34 1 3.2477 -2.6770 -2.6683 35 1 1.7754 -1.6619 -2.5860 36 1 -0.6020 -3.6918 -2.9502 37 1 -3.5597 -2.4692 -3.8905 38 1 0.8725 -5.6998 -3.0491 39 1 2.6434 -5.4135 -3.0114 40 1 3.5975 -5.2423 -0.8431 41 1 2.5246 -5.2053 0.5767 42 1 2.3864 -6.5255 -0.6091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988993502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:26 Heat of formation + Delta-G solvation = 43.343919 kcal Electronic energy + Delta-G solvation = -24665.811660 eV Core-core repulsion = 21261.402073 eV Total energy + Delta-G solvation = -3404.409587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.07430 -39.64858 -37.28505 -34.40616 -34.00772 -32.00362 -31.36174 -30.62700 -28.53293 -28.16503 -26.01080 -25.54123 -23.86665 -23.29258 -21.16026 -20.36511 -19.93167 -18.61456 -17.42033 -17.13121 -16.48855 -15.74694 -15.55415 -15.06224 -14.62358 -14.37848 -13.83095 -13.54956 -13.46350 -13.33344 -13.17624 -12.95213 -12.71794 -12.50611 -12.30936 -12.12274 -11.97658 -11.78627 -11.69501 -11.20031 -10.99495 -10.78587 -10.69713 -10.37415 -10.18939 -10.07092 -9.73753 -9.63785 -9.49819 -9.05922 -8.33494 -8.20370 -7.06363 -5.82867 -3.13799 1.82654 2.37508 2.96415 3.14167 3.41283 3.44311 3.46559 3.47281 4.52720 4.53677 4.59203 4.64919 4.90993 4.99385 5.09260 5.16719 5.23631 5.29110 5.45964 5.50220 5.52977 5.59976 5.73610 5.79691 5.90734 6.06994 6.12508 6.15745 6.18226 6.24581 6.30139 6.36351 6.39277 6.53799 6.62555 6.72787 6.81998 7.16621 7.62953 7.78602 8.10916 8.33861 8.35519 9.46070 9.99631 10.34481 11.38746 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013731 B = 0.006218 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.658619 B = 4502.232736 C = 5613.176620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.067 3.933 3 N -0.492 5.492 4 C 0.192 3.808 5 N -0.442 5.442 6 C 0.073 3.927 7 C -0.066 4.066 8 C 0.612 3.388 9 O -0.536 6.536 10 N -0.587 5.587 11 C 0.073 3.927 12 C 0.170 3.830 13 H 0.075 0.925 14 N -0.709 5.709 15 C -0.250 4.250 16 H 0.071 0.929 17 C -0.005 4.005 18 N -0.927 5.927 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C -0.139 4.139 24 C 0.136 3.864 25 H 0.078 0.922 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.208 0.792 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.386 0.614 37 H 0.257 0.743 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.111 -0.805 5.856 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.065 4.065 3 N -0.210 5.210 4 C -0.089 4.089 5 N -0.127 5.127 6 C -0.070 4.070 7 C -0.182 4.182 8 C 0.398 3.602 9 O -0.413 6.413 10 N -0.319 5.319 11 C -0.054 4.054 12 C 0.057 3.943 13 H 0.092 0.908 14 N -0.349 5.349 15 C -0.381 4.381 16 H 0.089 0.911 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.736 3.264 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.178 4.178 24 C 0.034 3.966 25 H 0.096 0.904 26 C -0.217 4.217 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.225 0.775 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.220 0.780 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.713 -0.252 6.324 16.940 hybrid contribution -0.054 -0.109 -0.542 0.555 sum 15.660 -0.362 5.782 16.697 Atomic orbital electron populations 1.20150 0.86721 1.03940 1.02343 1.20881 0.96557 0.86603 1.02488 1.70000 1.00302 1.30288 1.20460 1.24891 0.97219 0.81567 1.05239 1.45205 1.05727 1.07655 1.54087 1.22074 0.84825 0.96313 1.03781 1.20648 0.84492 0.95063 1.17957 1.16431 0.78226 0.82872 0.82706 1.90800 1.48736 1.69966 1.31766 1.48403 1.66814 1.09758 1.06916 1.23408 0.98171 1.01275 0.82501 1.21312 0.87569 0.90103 0.95280 0.90763 1.42303 1.00642 1.55398 1.36519 1.19157 0.91665 1.20398 1.06860 0.91124 1.24740 0.96003 1.00452 0.98990 1.69651 1.02218 1.47424 1.38090 0.86300 0.77724 0.80829 0.81504 1.21222 1.21622 1.21118 1.23098 1.02302 0.99379 0.92990 1.21542 0.99051 0.79706 0.96338 0.90412 1.22125 0.98580 0.99805 1.01178 0.91161 0.90600 0.90361 0.77538 0.90120 0.89189 0.89802 0.93272 0.90170 0.77958 0.93274 0.89570 0.90805 0.92960 0.91869 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.24 36.00 0.37 -0.97 16 2 C 0.07 1.23 7.15 -82.52 -0.59 0.64 16 3 N -0.49 -8.34 11.20 -10.65 -0.12 -8.46 16 4 C 0.19 2.50 12.52 -90.58 -1.13 1.36 16 5 N -0.44 -5.86 3.17 -121.98 -0.39 -6.25 16 6 C 0.07 0.62 11.07 59.85 0.66 1.29 16 7 C -0.07 -1.14 5.61 -82.15 -0.46 -1.60 16 8 C 0.61 11.26 6.51 -12.82 -0.08 11.18 16 9 O -0.54 -11.23 16.35 5.20 0.09 -11.15 16 10 N -0.59 -9.93 3.07 -164.52 -0.50 -10.44 16 11 C 0.07 1.21 6.33 -2.53 -0.02 1.20 16 12 C 0.17 3.04 3.72 -65.78 -0.24 2.80 16 13 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 14 N -0.71 -16.59 5.23 -51.35 -0.27 -16.86 16 15 C -0.25 -6.57 9.96 -15.06 -0.15 -6.72 16 16 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 17 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 18 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 19 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.14 -2.03 6.08 -24.90 -0.15 -2.18 16 24 C 0.14 2.13 3.43 -66.96 -0.23 1.90 16 25 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 26 C -0.16 -2.05 9.10 37.16 0.34 -1.71 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.58 7.94 -51.93 -0.41 1.17 16 30 H 0.21 1.66 8.06 -52.48 -0.42 1.23 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.59 7.78 -51.93 -0.40 1.18 16 36 H 0.39 9.89 7.86 -40.82 -0.32 9.57 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 0.88 7.85 -51.92 -0.41 0.47 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.92 7.07 -51.93 -0.37 0.56 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -33.23 352.04 -8.49 -41.72 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.51 Total: 8.81 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.79 Total: 6.95 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -0.55 Total: -68.50 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.23 -8.49 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988993502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.062 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds