Wall clock time and date at job start Tue Mar 31 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38047 * 126.28880 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00237 * 40.96488 * 4 3 2 6 6 N 1.34775 * 119.99632 * 220.96315 * 4 3 2 7 7 C 1.46927 * 120.63157 * 5.33539 * 6 4 3 8 8 C 1.53629 * 108.54170 * 126.36534 * 7 6 4 9 9 C 1.53044 * 109.23810 * 54.85952 * 8 7 6 10 10 N 1.46501 * 109.45864 * 178.48941 * 9 8 7 11 11 C 1.36943 * 120.00013 * 275.07144 * 10 9 8 12 12 H 1.07998 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00017 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00021 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46966 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46909 * 119.99647 * 15 13 11 18 18 H 1.48497 * 109.47221 * 239.99889 * 15 13 11 19 19 C 1.53035 * 109.53730 * 298.50895 * 9 8 7 20 20 C 1.46925 * 120.63007 * 185.61600 * 6 4 3 21 21 C 1.41288 * 107.16684 * 179.97438 * 3 2 1 22 22 N 1.30440 * 108.02626 * 359.97438 * 21 3 2 23 23 N 1.34255 * 126.29182 * 179.68352 * 2 1 3 24 24 C 1.46498 * 125.75240 * 359.97438 * 23 2 1 25 25 H 1.09004 * 109.47192 * 90.00461 * 1 2 3 26 26 H 1.09001 * 109.47259 * 330.00193 * 1 2 3 27 27 H 1.09000 * 109.47553 * 210.00300 * 1 2 3 28 28 H 1.08994 * 109.59190 * 246.19990 * 7 6 4 29 29 H 1.09006 * 109.58912 * 6.62936 * 7 6 4 30 30 H 1.08995 * 109.63925 * 294.86924 * 8 7 6 31 31 H 1.09002 * 109.43410 * 174.72266 * 8 7 6 32 32 H 1.09003 * 109.45936 * 58.53086 * 9 8 7 33 33 H 0.96993 * 119.99986 * 95.06459 * 10 9 8 34 34 H 0.96997 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.50067 * 301.41491 * 19 9 8 36 36 H 1.09004 * 109.52350 * 181.33509 * 19 9 8 37 37 H 1.08994 * 109.58716 * 353.37350 * 20 6 4 38 38 H 1.08999 * 109.58616 * 113.65791 * 20 6 4 39 39 H 1.08007 * 125.98701 * 180.02562 * 21 3 2 40 40 H 1.09003 * 109.47522 * 90.00008 * 24 23 2 41 41 H 1.09008 * 109.46884 * 209.99533 * 24 23 2 42 42 H 1.08999 * 109.47437 * 329.99285 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 0.0005 5 8 0.9459 2.8643 0.6913 6 7 2.5266 3.4260 -0.7647 7 6 3.5867 3.0067 -1.6915 8 6 3.2488 3.5381 -3.0928 9 6 3.0400 5.0526 -3.0210 10 7 2.7530 5.5698 -4.3612 11 6 3.7818 5.8825 -5.2093 12 1 4.8047 5.7482 -4.8900 13 6 3.5098 6.3730 -6.4791 14 7 2.2632 6.5372 -6.8681 15 14 4.9131 6.8002 -7.6356 16 1 6.2090 6.5275 -6.9635 17 1 4.8095 5.9746 -8.8657 18 1 4.8365 8.2385 -7.9969 19 6 1.8644 5.3636 -2.0919 20 6 2.1827 4.8521 -0.6834 21 6 3.6590 0.6499 0.0006 22 7 3.6340 -0.6543 0.0015 23 7 2.3016 -1.0821 0.0060 24 6 1.8500 -2.4757 0.0142 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5139 28 1 4.5421 3.4157 -1.3632 29 1 3.6417 1.9183 -1.7155 30 1 2.3378 3.0621 -3.4553 31 1 4.0713 3.3162 -3.7729 32 1 3.9430 5.5257 -2.6350 33 1 1.8343 5.6906 -4.6480 34 1 2.0732 6.8803 -7.7552 35 1 0.9664 4.8704 -2.4637 36 1 1.7009 6.4408 -2.0594 37 1 1.3110 4.9818 -0.0420 38 1 3.0250 5.4082 -0.2721 39 1 4.5449 1.2677 0.0012 40 1 1.7376 -2.8274 -1.0114 41 1 2.5850 -3.0927 0.5313 42 1 0.8916 -2.5441 0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989944601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:13 Heat of formation + Delta-G solvation = 54.113417 kcal Electronic energy + Delta-G solvation = -23639.210136 eV Core-core repulsion = 20235.267549 eV Total energy + Delta-G solvation = -3403.942587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65175 -39.51254 -37.17968 -34.51848 -33.82323 -32.28702 -31.88419 -30.72925 -29.26628 -27.60484 -27.05828 -24.90017 -23.09004 -22.90258 -21.71834 -20.73160 -19.85548 -18.65986 -17.37922 -17.00176 -16.27822 -15.79314 -15.72033 -14.81398 -14.77676 -14.50956 -13.90788 -13.66062 -13.61189 -13.43838 -13.34357 -13.31323 -12.89788 -12.79573 -12.72710 -12.33845 -12.18777 -11.82717 -11.47195 -11.02627 -10.94100 -10.84934 -10.78444 -10.43357 -10.18702 -9.79359 -9.71999 -9.65946 -9.51307 -8.90429 -8.69169 -8.34893 -6.96137 -5.76952 -3.05844 1.45262 2.13874 2.15761 3.08726 3.41226 3.42810 3.48428 3.50616 4.22623 4.36282 4.58334 4.71415 4.74684 4.83690 4.97826 5.07457 5.20922 5.28873 5.31994 5.40426 5.43081 5.50032 5.57260 5.65983 5.72114 5.76916 5.82410 6.00540 6.08393 6.25379 6.28791 6.43343 6.46592 6.56283 6.65545 6.71661 6.95331 7.08545 7.39933 7.64120 7.69877 8.38634 8.41534 9.52744 10.10870 10.45490 11.45770 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003534 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.825686 B = 7920.206982 C = 8411.838896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.145 3.855 3 C -0.287 4.287 4 C 0.597 3.403 5 O -0.554 6.554 6 N -0.600 5.600 7 C 0.104 3.896 8 C -0.149 4.149 9 C 0.179 3.821 10 N -0.725 5.725 11 C -0.238 4.238 12 H 0.071 0.929 13 C -0.014 4.014 14 N -0.932 5.932 15 Si 0.905 3.095 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.138 4.138 20 C 0.118 3.882 21 C 0.085 3.915 22 N -0.300 5.300 23 N -0.366 5.366 24 C 0.097 3.903 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.191 0.809 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -15.642 15.630 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.014 3.986 3 C -0.302 4.302 4 C 0.386 3.614 5 O -0.433 6.433 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.190 4.190 9 C 0.068 3.932 10 N -0.365 5.365 11 C -0.369 4.369 12 H 0.089 0.911 13 C -0.210 4.210 14 N -0.581 5.581 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.177 4.177 20 C -0.005 4.005 21 C -0.102 4.102 22 N -0.120 5.120 23 N -0.146 5.146 24 C -0.044 4.044 25 H 0.104 0.896 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.208 0.792 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.138 -16.629 15.891 23.029 hybrid contribution 0.159 0.880 -1.045 1.375 sum -0.979 -15.748 14.846 21.665 Atomic orbital electron populations 1.20669 0.86380 1.04986 1.04024 1.21403 0.94719 0.86275 0.96240 1.19954 0.93079 0.93605 1.23565 1.17253 0.81541 0.83743 0.78902 1.90707 1.28790 1.80496 1.43340 1.47973 1.37770 1.07490 1.39969 1.22111 0.89570 1.00177 0.90118 1.22726 1.02198 1.00042 0.94010 1.20180 0.95270 0.91072 0.86641 1.42452 1.06712 1.76721 1.10617 1.19287 0.88071 1.35377 0.94158 0.91103 1.24747 0.96205 1.02279 0.97785 1.69674 1.16801 1.51988 1.19634 0.86141 0.81396 0.77721 0.81082 1.20538 1.21931 1.21905 1.22191 0.99946 1.01392 0.94174 1.21607 1.01359 0.79468 0.98057 1.24048 0.97169 0.91753 0.97242 1.77173 0.95979 1.13228 1.25573 1.48285 1.04059 1.06236 1.56017 1.21935 1.01183 0.77464 1.03816 0.89614 0.87770 0.90863 0.91560 0.89992 0.92322 0.90813 0.93407 0.78296 0.93584 0.91867 0.90613 0.89320 0.91586 0.79237 0.90276 0.88943 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.92 36.01 0.36 -0.58 16 2 C 0.15 1.71 7.00 -81.60 -0.57 1.14 16 3 C -0.29 -3.87 5.17 -105.06 -0.54 -4.42 16 4 C 0.60 9.15 7.42 -12.52 -0.09 9.05 16 5 O -0.55 -9.78 15.13 5.28 0.08 -9.70 16 6 N -0.60 -8.72 2.97 -173.77 -0.52 -9.24 16 7 C 0.10 1.41 5.54 -3.48 -0.02 1.39 16 8 C -0.15 -2.55 5.67 -26.38 -0.15 -2.70 16 9 C 0.18 3.43 2.73 -67.89 -0.19 3.24 16 10 N -0.72 -17.86 5.12 -53.38 -0.27 -18.13 16 11 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 12 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 13 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 14 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 15 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 20 C 0.12 1.71 6.44 -3.71 -0.02 1.68 16 21 C 0.08 1.03 9.63 -16.98 -0.16 0.87 16 22 N -0.30 -3.79 12.50 30.86 0.39 -3.40 16 23 N -0.37 -3.94 3.98 -63.34 -0.25 -4.20 16 24 C 0.10 0.58 11.24 59.85 0.67 1.25 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 1.15 6.76 -51.93 -0.35 0.80 16 27 H 0.07 0.45 7.04 -51.93 -0.37 0.08 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.05 4.81 -51.93 -0.25 0.80 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 34 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.19 1.85 7.41 -52.48 -0.39 1.46 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.09 0.32 7.01 -51.93 -0.36 -0.04 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -33.98 340.70 -7.02 -41.01 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.17 Total: 7.32 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.11 Total: 1.36 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: 0.07 Total: -62.29 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.98 -7.02 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989944601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.122 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds