Wall clock time and date at job start Tue Mar 31 2020 03:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38047 * 126.28880 * 2 1 4 4 C 1.47433 * 126.41287 * 0.02562 * 3 2 1 5 5 O 1.21596 * 120.00237 * 40.96488 * 4 3 2 6 6 N 1.34775 * 119.99632 * 220.96315 * 4 3 2 7 7 C 1.46927 * 120.63157 * 5.33539 * 6 4 3 8 8 C 1.53629 * 108.54170 * 126.36534 * 7 6 4 9 9 C 1.53044 * 109.23810 * 54.85952 * 8 7 6 10 10 N 1.46501 * 109.45864 * 178.48941 * 9 8 7 11 11 C 1.36943 * 120.00013 * 275.07144 * 10 9 8 12 12 H 1.07998 * 120.00018 * 359.97438 * 11 10 9 13 13 C 1.38810 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00017 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00021 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46966 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.46909 * 119.99647 * 15 13 11 18 18 H 1.48497 * 109.47221 * 239.99889 * 15 13 11 19 19 C 1.53035 * 109.53730 * 298.50895 * 9 8 7 20 20 C 1.46925 * 120.63007 * 185.61600 * 6 4 3 21 21 C 1.41288 * 107.16684 * 179.97438 * 3 2 1 22 22 N 1.30440 * 108.02626 * 359.97438 * 21 3 2 23 23 N 1.34255 * 126.29182 * 179.68352 * 2 1 3 24 24 C 1.46498 * 125.75240 * 359.97438 * 23 2 1 25 25 H 1.09004 * 109.47192 * 90.00461 * 1 2 3 26 26 H 1.09001 * 109.47259 * 330.00193 * 1 2 3 27 27 H 1.09000 * 109.47553 * 210.00300 * 1 2 3 28 28 H 1.08994 * 109.59190 * 246.19990 * 7 6 4 29 29 H 1.09006 * 109.58912 * 6.62936 * 7 6 4 30 30 H 1.08995 * 109.63925 * 294.86924 * 8 7 6 31 31 H 1.09002 * 109.43410 * 174.72266 * 8 7 6 32 32 H 1.09003 * 109.45936 * 58.53086 * 9 8 7 33 33 H 0.96993 * 119.99986 * 95.06459 * 10 9 8 34 34 H 0.96997 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.50067 * 301.41491 * 19 9 8 36 36 H 1.09004 * 109.52350 * 181.33509 * 19 9 8 37 37 H 1.08994 * 109.58716 * 353.37350 * 20 6 4 38 38 H 1.08999 * 109.58616 * 113.65791 * 20 6 4 39 39 H 1.08007 * 125.98701 * 180.02562 * 21 3 2 40 40 H 1.09003 * 109.47522 * 90.00008 * 24 23 2 41 41 H 1.09008 * 109.46884 * 209.99533 * 24 23 2 42 42 H 1.08999 * 109.47437 * 329.99285 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8856 2.5204 0.0005 5 8 0.9459 2.8643 0.6913 6 7 2.5266 3.4260 -0.7647 7 6 3.5867 3.0067 -1.6915 8 6 3.2488 3.5381 -3.0928 9 6 3.0400 5.0526 -3.0210 10 7 2.7530 5.5698 -4.3612 11 6 3.7818 5.8825 -5.2093 12 1 4.8047 5.7482 -4.8900 13 6 3.5098 6.3730 -6.4791 14 7 2.2632 6.5372 -6.8681 15 14 4.9131 6.8002 -7.6356 16 1 6.2090 6.5275 -6.9635 17 1 4.8095 5.9746 -8.8657 18 1 4.8365 8.2385 -7.9969 19 6 1.8644 5.3636 -2.0919 20 6 2.1827 4.8521 -0.6834 21 6 3.6590 0.6499 0.0006 22 7 3.6340 -0.6543 0.0015 23 7 2.3016 -1.0821 0.0060 24 6 1.8500 -2.4757 0.0142 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5139 28 1 4.5421 3.4157 -1.3632 29 1 3.6417 1.9183 -1.7155 30 1 2.3378 3.0621 -3.4553 31 1 4.0713 3.3162 -3.7729 32 1 3.9430 5.5257 -2.6350 33 1 1.8343 5.6906 -4.6480 34 1 2.0732 6.8803 -7.7552 35 1 0.9664 4.8704 -2.4637 36 1 1.7009 6.4408 -2.0594 37 1 1.3110 4.9818 -0.0420 38 1 3.0250 5.4082 -0.2721 39 1 4.5449 1.2677 0.0012 40 1 1.7376 -2.8274 -1.0114 41 1 2.5850 -3.0927 0.5313 42 1 0.8916 -2.5441 0.5289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989944601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:13 Heat of formation + Delta-G solvation = 30.980672 kcal Electronic energy + Delta-G solvation = -23640.213247 eV Core-core repulsion = 20235.267549 eV Total energy + Delta-G solvation = -3404.945698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.54272 -40.70218 -38.57174 -36.12739 -34.71379 -33.73467 -33.03994 -31.96341 -30.98133 -28.55570 -27.73052 -26.51428 -24.65940 -24.17604 -22.89019 -21.76797 -21.07885 -19.80662 -19.05194 -18.35497 -17.26098 -16.78562 -16.73740 -16.51810 -15.96354 -15.48903 -15.37591 -15.26452 -15.03844 -14.61811 -14.48492 -14.06352 -13.98653 -13.80187 -13.44269 -13.36576 -13.23933 -13.05355 -12.99045 -12.85346 -12.56732 -12.17031 -12.08948 -11.97162 -11.92459 -11.67437 -11.27720 -10.96408 -10.81539 -10.34867 -9.72455 -9.47076 -8.98120 -7.91649 -5.20189 0.56406 1.18454 1.43328 1.49450 1.49718 1.59712 1.97196 2.31449 2.58457 3.41616 3.46462 3.59459 3.80128 3.89298 3.99191 4.03256 4.15190 4.21505 4.31468 4.38691 4.41420 4.44580 4.52476 4.61158 4.66718 4.67440 4.82339 4.88442 4.89926 4.94305 5.03537 5.07002 5.11969 5.33152 5.42487 5.52529 5.57067 5.68138 5.90928 6.30339 6.46673 6.54512 7.22425 7.36206 8.12316 8.35221 9.32359 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003534 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.825686 B = 7920.206982 C = 8411.838896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.145 3.855 3 C -0.319 4.319 4 C 0.597 3.403 5 O -0.583 6.583 6 N -0.601 5.601 7 C 0.116 3.884 8 C -0.138 4.138 9 C 0.173 3.827 10 N -0.739 5.739 11 C -0.232 4.232 12 H 0.080 0.920 13 C -0.079 4.079 14 N -0.973 5.973 15 Si 0.970 3.030 16 H -0.263 1.263 17 H -0.297 1.297 18 H -0.296 1.296 19 C -0.127 4.127 20 C 0.124 3.876 21 C 0.085 3.915 22 N -0.322 5.322 23 N -0.362 5.362 24 C 0.085 3.915 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.370 0.630 34 H 0.249 0.751 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -17.200 16.791 24.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.011 3.989 3 C -0.333 4.333 4 C 0.387 3.613 5 O -0.465 6.465 6 N -0.332 5.332 7 C -0.007 4.007 8 C -0.179 4.179 9 C 0.065 3.935 10 N -0.378 5.378 11 C -0.364 4.364 12 H 0.098 0.902 13 C -0.271 4.271 14 N -0.624 5.624 15 Si 0.800 3.200 16 H -0.187 1.187 17 H -0.224 1.224 18 H -0.224 1.224 19 C -0.166 4.166 20 C 0.002 3.998 21 C -0.101 4.101 22 N -0.141 5.141 23 N -0.142 5.142 24 C -0.055 4.055 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.201 0.799 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.226 0.774 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.089 -18.234 17.096 24.995 hybrid contribution -0.259 1.272 -1.330 1.858 sum -0.170 -16.962 15.766 23.159 Atomic orbital electron populations 1.20714 0.84784 1.05617 1.04642 1.21778 0.95801 0.86285 0.95008 1.19970 0.94218 0.93004 1.26148 1.17526 0.80905 0.84480 0.78344 1.90686 1.30096 1.81095 1.44618 1.48014 1.37884 1.07399 1.39952 1.22070 0.90161 1.00981 0.87522 1.22513 1.00902 0.98222 0.96280 1.20429 0.96348 0.92101 0.84598 1.42691 1.05553 1.77160 1.12383 1.19689 0.88983 1.33395 0.94367 0.90194 1.25549 0.98401 1.03484 0.99686 1.69834 1.18864 1.53942 1.19758 0.85108 0.79345 0.76763 0.78790 1.18685 1.22419 1.22375 1.22047 0.98224 1.01276 0.95026 1.21545 1.02241 0.79834 0.96215 1.24328 0.97315 0.91835 0.96659 1.77124 0.97314 1.13435 1.26266 1.48652 1.03325 1.07564 1.54613 1.22366 1.02699 0.75156 1.05241 0.88888 0.89857 0.87482 0.88981 0.88693 0.94259 0.91799 0.92882 0.79908 0.94229 0.93430 0.90755 0.89575 0.89369 0.77425 0.89006 0.88074 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.92 71.24 0.71 -0.93 16 2 C 0.14 3.16 7.00 42.14 0.30 3.45 16 3 C -0.32 -8.17 5.17 -20.15 -0.10 -8.28 16 4 C 0.60 17.78 7.42 86.67 0.64 18.42 16 5 O -0.58 -20.46 15.13 -4.02 -0.06 -20.52 16 6 N -0.60 -16.65 2.97 -821.94 -2.44 -19.09 16 7 C 0.12 2.92 5.54 86.51 0.48 3.40 16 8 C -0.14 -4.65 5.67 30.82 0.17 -4.47 16 9 C 0.17 6.56 2.73 45.02 0.12 6.69 16 10 N -0.74 -36.76 5.12 -322.81 -1.65 -38.41 16 11 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 12 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 13 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 14 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 15 Si 0.97 45.78 29.55 68.60 2.03 47.81 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 18 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 19 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 20 C 0.12 3.45 6.44 86.36 0.56 4.01 16 21 C 0.09 1.92 9.63 85.65 0.83 2.75 16 22 N -0.32 -7.51 12.50 -56.28 -0.70 -8.21 16 23 N -0.36 -6.99 3.98 -354.30 -1.41 -8.40 16 24 C 0.08 0.76 11.24 127.77 1.44 2.20 16 25 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.08 1.78 6.76 -2.39 -0.02 1.76 16 27 H 0.11 0.98 7.04 -2.39 -0.02 0.96 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.09 2.23 4.81 -2.38 -0.01 2.21 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 33 H 0.37 20.17 7.80 -92.71 -0.72 19.44 16 34 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.49 7.00 -2.39 -0.02 2.47 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.21 3.56 7.41 -2.91 -0.02 3.54 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.12 0.41 7.01 -2.39 -0.02 0.39 16 Total: -1.00 -73.99 340.70 2.96 -71.03 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.31 Total: 27.91 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.61 Total: 7.35 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -5.92 Total: -133.59 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.52 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.99 2.96 -71.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989944601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.013 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds