Wall clock time and date at job start Tue Mar 31 2020 04:17:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.39873 * 126.03825 * 2 1
4 4 N 1.30832 * 108.20166 * 179.97438 * 3 2 1
5 5 N 1.40085 * 108.20599 * 359.97438 * 4 3 2
6 6 C 1.46500 * 126.03813 * 179.74170 * 5 4 3
7 7 C 1.50703 * 109.46963 * 305.01996 * 6 5 4
8 8 O 1.21285 * 120.00159 * 0.02562 * 7 6 5
9 9 N 1.34776 * 120.00471 * 179.97438 * 7 6 5
10 10 C 1.46931 * 120.62757 * 359.72789 * 9 7 6
11 11 C 1.53621 * 108.54684 * 126.36392 * 10 9 7
12 12 C 1.53042 * 109.24023 * 54.85638 * 11 10 9
13 13 N 1.46493 * 109.46129 * 178.49242 * 12 11 10
14 14 C 1.36944 * 120.00166 * 275.06919 * 13 12 11
15 15 H 1.07994 * 119.99268 * 359.97438 * 14 13 12
16 16 C 1.38810 * 120.00057 * 179.97438 * 14 13 12
17 17 N 1.31622 * 120.00065 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 119.99801 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.46657 * 60.00162 * 18 16 14
20 20 H 1.48493 * 109.47104 * 180.02562 * 18 16 14
21 21 H 1.48495 * 109.47179 * 300.00337 * 18 16 14
22 22 C 1.53045 * 109.53646 * 298.51037 * 12 11 10
23 23 C 1.46921 * 120.63772 * 180.02562 * 9 7 6
24 24 C 1.34943 * 107.92716 * 0.02562 * 5 4 3
25 25 H 1.08995 * 109.47247 * 89.97839 * 1 2 3
26 26 H 1.09001 * 109.46949 * 209.98085 * 1 2 3
27 27 H 1.09003 * 109.47047 * 329.97630 * 1 2 3
28 28 H 1.07998 * 125.89584 * 359.97438 * 3 2 1
29 29 H 1.08997 * 109.47765 * 65.01946 * 6 5 4
30 30 H 1.08996 * 109.47399 * 185.02461 * 6 5 4
31 31 H 1.09004 * 109.58699 * 246.19978 * 10 9 7
32 32 H 1.09002 * 109.58711 * 6.61811 * 10 9 7
33 33 H 1.09000 * 109.63665 * 294.86700 * 11 10 9
34 34 H 1.08997 * 109.46231 * 174.74171 * 11 10 9
35 35 H 1.08998 * 109.45083 * 58.52372 * 12 11 10
36 36 H 0.96998 * 120.00104 * 95.06456 * 13 12 11
37 37 H 0.97000 * 119.99643 * 179.97438 * 17 16 14
38 38 H 1.09000 * 109.49836 * 301.41724 * 22 12 11
39 39 H 1.08997 * 109.52503 * 181.32884 * 22 12 11
40 40 H 1.09006 * 109.58263 * 353.37431 * 23 9 7
41 41 H 1.08993 * 109.58745 * 113.65541 * 23 9 7
42 42 H 1.07996 * 126.13000 * 180.02562 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3299 1.1310 0.0000
4 7 3.5753 0.7303 0.0006
5 7 3.5844 -0.6705 0.0015
6 6 4.7745 -1.5248 -0.0030
7 6 5.6531 -1.1561 -1.1706
8 8 5.3182 -0.2670 -1.9245
9 7 6.8114 -1.8136 -1.3766
10 6 7.2339 -2.8882 -0.4680
11 6 7.5263 -4.1455 -1.3008
12 6 8.5480 -3.8041 -2.3879
13 7 8.8575 -5.0084 -3.1624
14 6 9.8152 -5.8808 -2.7184
15 1 10.3425 -5.6806 -1.7975
16 6 10.1081 -7.0222 -3.4520
17 7 9.4656 -7.2658 -4.5747
18 14 11.4150 -8.2118 -2.8467
19 1 11.0291 -8.7330 -1.5108
20 1 11.5373 -9.3412 -3.8029
21 1 12.7177 -7.5063 -2.7453
22 6 7.9685 -2.7352 -3.3173
23 6 7.6787 -1.4653 -2.5102
24 6 2.3032 -1.0942 0.0010
25 1 -0.3633 0.0004 -1.0276
26 1 -0.3633 -0.8902 0.5135
27 1 -0.3633 0.8898 0.5142
28 1 1.9950 2.1578 -0.0004
29 1 5.3268 -1.3835 0.9260
30 1 4.4725 -2.5683 -0.0909
31 1 8.1339 -2.5826 0.0658
32 1 6.4370 -3.0979 0.2455
33 1 6.6059 -4.4997 -1.7650
34 1 7.9302 -4.9240 -0.6536
35 1 9.4592 -3.4266 -1.9239
36 1 8.3840 -5.1880 -3.9897
37 1 9.6706 -8.0633 -5.0875
38 1 7.0438 -3.1025 -3.7624
39 1 8.6869 -2.5092 -4.1052
40 1 7.1753 -0.7358 -3.1447
41 1 8.6130 -1.0439 -2.1394
42 1 1.9724 -2.1222 0.0018
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000990128508.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:06
Heat of formation + Delta-G solvation = 58.799826 kcal
Electronic energy + Delta-G solvation = -23080.013016 eV
Core-core repulsion = 19676.273647 eV
Total energy + Delta-G solvation = -3403.739369 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.38001 -39.97681 -37.43605 -34.57848 -33.88444 -32.18198 -31.68984 -30.95158
-29.47569 -28.43797 -25.90421 -24.76267 -23.11528 -22.76153 -21.44600 -20.52511
-20.20873 -18.87190 -17.54067 -17.10801 -16.93733 -15.71247 -15.67034 -14.90268
-14.77876 -14.40076 -13.89587 -13.82683 -13.72879 -13.52265 -13.45114 -13.20987
-13.07427 -12.87727 -12.46716 -12.23203 -12.08820 -11.96523 -11.65367 -11.05932
-10.93610 -10.88207 -10.60930 -10.55580 -10.32105 -10.05460 -9.90485 -9.73728
-9.39046 -8.97493 -8.60278 -8.43040 -7.05176 -5.83648 -3.13485 1.75366
2.25187 2.50684 2.73506 2.99311 3.38268 3.43081 3.44334 4.18370
4.41226 4.51739 4.63485 4.77265 4.89098 4.93571 5.12909 5.21498
5.25663 5.28825 5.31569 5.46145 5.50785 5.54543 5.64519 5.67444
5.83915 5.85870 5.91720 6.01194 6.14288 6.25617 6.30521 6.42273
6.49917 6.56919 6.79517 6.84206 6.94765 7.35667 7.61596 7.63035
8.09151 8.34467 9.45632 10.02591 10.37066 11.38721
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.033806 B = 0.002809 C = 0.002740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 828.062202 B = 9964.889847 C =10218.381051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.242 4.242
3 C 0.041 3.959
4 N -0.265 5.265
5 N -0.361 5.361
6 C 0.117 3.883
7 C 0.501 3.499
8 O -0.519 6.519
9 N -0.605 5.605
10 C 0.105 3.895
11 C -0.151 4.151
12 C 0.179 3.821
13 N -0.724 5.724
14 C -0.243 4.243
15 H 0.070 0.930
16 C -0.012 4.012
17 N -0.932 5.932
18 Si 0.907 3.093
19 H -0.286 1.286
20 H -0.291 1.291
21 H -0.286 1.286
22 C -0.139 4.139
23 C 0.118 3.882
24 C 0.052 3.948
25 H 0.059 0.941
26 H 0.058 0.942
27 H 0.061 0.939
28 H 0.180 0.820
29 H 0.113 0.887
30 H 0.125 0.875
31 H 0.072 0.928
32 H 0.073 0.927
33 H 0.060 0.940
34 H 0.077 0.923
35 H 0.049 0.951
36 H 0.384 0.616
37 H 0.256 0.744
38 H 0.063 0.937
39 H 0.077 0.923
40 H 0.088 0.912
41 H 0.068 0.932
42 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.714 12.209 11.565 21.700
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.254 4.254
3 C -0.146 4.146
4 N -0.085 5.085
5 N -0.143 5.143
6 C -0.008 4.008
7 C 0.286 3.714
8 O -0.394 6.394
9 N -0.340 5.340
10 C -0.019 4.019
11 C -0.193 4.193
12 C 0.069 3.931
13 N -0.364 5.364
14 C -0.374 4.374
15 H 0.088 0.912
16 C -0.208 4.208
17 N -0.580 5.580
18 Si 0.738 3.262
19 H -0.213 1.213
20 H -0.217 1.217
21 H -0.212 1.212
22 C -0.178 4.178
23 C -0.004 4.004
24 C -0.093 4.093
25 H 0.078 0.922
26 H 0.077 0.923
27 H 0.080 0.920
28 H 0.197 0.803
29 H 0.131 0.869
30 H 0.143 0.857
31 H 0.090 0.910
32 H 0.092 0.908
33 H 0.079 0.921
34 H 0.095 0.905
35 H 0.067 0.933
36 H 0.218 0.782
37 H 0.066 0.934
38 H 0.081 0.919
39 H 0.096 0.904
40 H 0.106 0.894
41 H 0.086 0.914
42 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -12.374 12.834 11.213 21.060
hybrid contribution -0.178 -1.319 0.032 1.332
sum -12.551 11.514 11.245 20.410
Atomic orbital electron populations
1.20030 0.89363 1.01938 1.01499 1.20115 0.97006 0.91910 1.16351
1.23811 0.90078 0.99744 1.00950 1.77468 1.20912 0.88269 1.21854
1.47994 1.04424 1.04816 1.57104 1.21554 0.85432 0.94215 0.99645
1.20411 0.81824 0.82658 0.86475 1.90763 1.71937 1.30086 1.46622
1.48154 1.20644 1.35993 1.29160 1.22018 1.00161 0.87781 0.91912
1.22771 1.01561 0.95468 0.99450 1.20155 0.94526 0.87537 0.90917
1.42430 1.45412 1.22186 1.26393 1.19178 1.12406 1.00598 1.05180
0.91197 1.24761 1.00093 0.98741 0.97252 1.69653 1.44338 1.28292
1.15714 0.86275 0.81556 0.80733 0.77645 1.21254 1.21687 1.21233
1.22217 1.01697 0.94998 0.98842 1.21633 0.93486 0.97821 0.87480
1.22310 0.83817 1.00119 1.03055 0.92187 0.92269 0.91988 0.80277
0.86898 0.85730 0.90953 0.90841 0.92127 0.90461 0.93332 0.78246
0.93383 0.91863 0.90444 0.89395 0.91391 0.81066
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.51 10.37 36.01 0.37 -0.14 16
2 C -0.24 -2.54 6.10 -105.05 -0.64 -3.18 16
3 C 0.04 0.49 11.96 -17.37 -0.21 0.29 16
4 N -0.27 -3.89 11.64 30.62 0.36 -3.53 16
5 N -0.36 -4.53 3.40 -62.55 -0.21 -4.74 16
6 C 0.12 1.21 5.34 -5.19 -0.03 1.18 16
7 C 0.50 7.04 7.73 -10.98 -0.08 6.96 16
8 O -0.52 -9.50 15.12 5.55 0.08 -9.42 16
9 N -0.60 -7.93 2.97 -172.48 -0.51 -8.44 16
10 C 0.10 1.17 6.37 -3.48 -0.02 1.15 16
11 C -0.15 -2.30 5.67 -26.39 -0.15 -2.45 16
12 C 0.18 3.24 2.73 -67.89 -0.19 3.06 16
13 N -0.72 -17.21 5.12 -53.39 -0.27 -17.49 16
14 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16
15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16
16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16
17 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16
18 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16
19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
22 C -0.14 -2.21 5.55 -26.59 -0.15 -2.36 16
23 C 0.12 1.66 6.43 -3.69 -0.02 1.64 16
24 C 0.05 0.54 11.36 -17.23 -0.20 0.35 16
25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
28 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16
29 H 0.11 0.92 7.93 -51.93 -0.41 0.51 16
30 H 0.12 0.90 7.63 -51.93 -0.40 0.51 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16
33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
35 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16
36 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16
37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
40 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16
41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16
LS Contribution 347.12 15.07 5.23 5.23
Total: -1.00 -34.54 347.12 -7.60 -42.13
By element:
Atomic # 1 Polarization: 13.29 SS G_CDS: -6.41 Total: 6.88 kcal
Atomic # 6 Polarization: 1.04 SS G_CDS: -1.56 Total: -0.51 kcal
Atomic # 7 Polarization: -61.07 SS G_CDS: 0.08 Total: -60.99 kcal
Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -34.54 -7.60 -42.13 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000990128508.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.933 kcal
(2) G-P(sol) polarization free energy of solvation -34.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds