Wall clock time and date at job start Tue Mar 31 2020 04:17:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.39873 * 126.03825 * 2 1
4 4 N 1.30832 * 108.20166 * 179.97438 * 3 2 1
5 5 N 1.40085 * 108.20599 * 359.97438 * 4 3 2
6 6 C 1.46500 * 126.03813 * 179.74170 * 5 4 3
7 7 C 1.50703 * 109.46963 * 305.01996 * 6 5 4
8 8 O 1.21285 * 120.00159 * 0.02562 * 7 6 5
9 9 N 1.34776 * 120.00471 * 179.97438 * 7 6 5
10 10 C 1.46931 * 120.62757 * 359.72789 * 9 7 6
11 11 C 1.53621 * 108.54684 * 126.36392 * 10 9 7
12 12 C 1.53042 * 109.24023 * 54.85638 * 11 10 9
13 13 N 1.46493 * 109.46129 * 178.49242 * 12 11 10
14 14 C 1.36944 * 120.00166 * 275.06919 * 13 12 11
15 15 H 1.07994 * 119.99268 * 359.97438 * 14 13 12
16 16 C 1.38810 * 120.00057 * 179.97438 * 14 13 12
17 17 N 1.31622 * 120.00065 * 0.02562 * 16 14 13
18 18 Si 1.86802 * 119.99801 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.46657 * 60.00162 * 18 16 14
20 20 H 1.48493 * 109.47104 * 180.02562 * 18 16 14
21 21 H 1.48495 * 109.47179 * 300.00337 * 18 16 14
22 22 C 1.53045 * 109.53646 * 298.51037 * 12 11 10
23 23 C 1.46921 * 120.63772 * 180.02562 * 9 7 6
24 24 C 1.34943 * 107.92716 * 0.02562 * 5 4 3
25 25 H 1.08995 * 109.47247 * 89.97839 * 1 2 3
26 26 H 1.09001 * 109.46949 * 209.98085 * 1 2 3
27 27 H 1.09003 * 109.47047 * 329.97630 * 1 2 3
28 28 H 1.07998 * 125.89584 * 359.97438 * 3 2 1
29 29 H 1.08997 * 109.47765 * 65.01946 * 6 5 4
30 30 H 1.08996 * 109.47399 * 185.02461 * 6 5 4
31 31 H 1.09004 * 109.58699 * 246.19978 * 10 9 7
32 32 H 1.09002 * 109.58711 * 6.61811 * 10 9 7
33 33 H 1.09000 * 109.63665 * 294.86700 * 11 10 9
34 34 H 1.08997 * 109.46231 * 174.74171 * 11 10 9
35 35 H 1.08998 * 109.45083 * 58.52372 * 12 11 10
36 36 H 0.96998 * 120.00104 * 95.06456 * 13 12 11
37 37 H 0.97000 * 119.99643 * 179.97438 * 17 16 14
38 38 H 1.09000 * 109.49836 * 301.41724 * 22 12 11
39 39 H 1.08997 * 109.52503 * 181.32884 * 22 12 11
40 40 H 1.09006 * 109.58263 * 353.37431 * 23 9 7
41 41 H 1.08993 * 109.58745 * 113.65541 * 23 9 7
42 42 H 1.07996 * 126.13000 * 180.02562 * 24 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3299 1.1310 0.0000
4 7 3.5753 0.7303 0.0006
5 7 3.5844 -0.6705 0.0015
6 6 4.7745 -1.5248 -0.0030
7 6 5.6531 -1.1561 -1.1706
8 8 5.3182 -0.2670 -1.9245
9 7 6.8114 -1.8136 -1.3766
10 6 7.2339 -2.8882 -0.4680
11 6 7.5263 -4.1455 -1.3008
12 6 8.5480 -3.8041 -2.3879
13 7 8.8575 -5.0084 -3.1624
14 6 9.8152 -5.8808 -2.7184
15 1 10.3425 -5.6806 -1.7975
16 6 10.1081 -7.0222 -3.4520
17 7 9.4656 -7.2658 -4.5747
18 14 11.4150 -8.2118 -2.8467
19 1 11.0291 -8.7330 -1.5108
20 1 11.5373 -9.3412 -3.8029
21 1 12.7177 -7.5063 -2.7453
22 6 7.9685 -2.7352 -3.3173
23 6 7.6787 -1.4653 -2.5102
24 6 2.3032 -1.0942 0.0010
25 1 -0.3633 0.0004 -1.0276
26 1 -0.3633 -0.8902 0.5135
27 1 -0.3633 0.8898 0.5142
28 1 1.9950 2.1578 -0.0004
29 1 5.3268 -1.3835 0.9260
30 1 4.4725 -2.5683 -0.0909
31 1 8.1339 -2.5826 0.0658
32 1 6.4370 -3.0979 0.2455
33 1 6.6059 -4.4997 -1.7650
34 1 7.9302 -4.9240 -0.6536
35 1 9.4592 -3.4266 -1.9239
36 1 8.3840 -5.1880 -3.9897
37 1 9.6706 -8.0633 -5.0875
38 1 7.0438 -3.1025 -3.7624
39 1 8.6869 -2.5092 -4.1052
40 1 7.1753 -0.7358 -3.1447
41 1 8.6130 -1.0439 -2.1394
42 1 1.9724 -2.1222 0.0018
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000990128508.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:05
Heat of formation + Delta-G solvation = 35.458491 kcal
Electronic energy + Delta-G solvation = -23081.025172 eV
Core-core repulsion = 19676.273647 eV
Total energy + Delta-G solvation = -3404.751525 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.20942 -41.06293 -38.73985 -36.16774 -34.75228 -33.81430 -32.53239 -32.10182
-31.05646 -29.36756 -26.87316 -26.16313 -24.44913 -24.11905 -22.47210 -21.50116
-21.23759 -20.01567 -19.05330 -18.49883 -17.82254 -16.82319 -16.72366 -16.54706
-15.74519 -15.48878 -15.37457 -15.29088 -14.88021 -14.75159 -14.41999 -14.08707
-14.00081 -13.78172 -13.52401 -13.32631 -13.14556 -13.03270 -12.79841 -12.66333
-12.63782 -12.22911 -12.19849 -12.01169 -11.70177 -11.43334 -11.32259 -11.13128
-10.86279 -10.29892 -9.73393 -9.20517 -9.00517 -7.92772 -5.21595 0.93992
1.47370 1.48789 1.49191 1.51372 1.57287 1.93594 2.00610 2.57374
3.28087 3.40878 3.67866 3.79774 3.88745 3.99780 4.04579 4.11306
4.15906 4.20105 4.33229 4.39746 4.52002 4.61348 4.63510 4.75280
4.80992 4.84356 4.94930 5.00915 5.03106 5.06732 5.27731 5.28443
5.35156 5.48552 5.53852 5.61458 5.78323 6.10644 6.28633 6.34195
6.79970 7.04815 7.34832 8.10876 8.33271 9.30755
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.033806 B = 0.002809 C = 0.002740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 828.062202 B = 9964.889847 C =10218.381051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C -0.254 4.254
3 C 0.031 3.969
4 N -0.318 5.318
5 N -0.372 5.372
6 C 0.116 3.884
7 C 0.497 3.503
8 O -0.569 6.569
9 N -0.604 5.604
10 C 0.112 3.888
11 C -0.141 4.141
12 C 0.172 3.828
13 N -0.739 5.739
14 C -0.234 4.234
15 H 0.081 0.919
16 C -0.079 4.079
17 N -0.973 5.973
18 Si 0.971 3.029
19 H -0.275 1.275
20 H -0.301 1.301
21 H -0.279 1.279
22 C -0.126 4.126
23 C 0.125 3.875
24 C 0.049 3.951
25 H 0.060 0.940
26 H 0.073 0.927
27 H 0.070 0.930
28 H 0.197 0.803
29 H 0.140 0.860
30 H 0.162 0.838
31 H 0.090 0.910
32 H 0.117 0.883
33 H 0.049 0.951
34 H 0.070 0.930
35 H 0.049 0.951
36 H 0.369 0.631
37 H 0.249 0.751
38 H 0.049 0.951
39 H 0.068 0.932
40 H 0.075 0.925
41 H 0.084 0.916
42 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.401 12.055 14.177 23.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.266 4.266
3 C -0.156 4.156
4 N -0.139 5.139
5 N -0.155 5.155
6 C -0.008 4.008
7 C 0.285 3.715
8 O -0.448 6.448
9 N -0.337 5.337
10 C -0.010 4.010
11 C -0.182 4.182
12 C 0.064 3.936
13 N -0.378 5.378
14 C -0.366 4.366
15 H 0.099 0.901
16 C -0.271 4.271
17 N -0.624 5.624
18 Si 0.800 3.200
19 H -0.201 1.201
20 H -0.228 1.228
21 H -0.205 1.205
22 C -0.165 4.165
23 C 0.002 3.998
24 C -0.095 4.095
25 H 0.078 0.922
26 H 0.092 0.908
27 H 0.089 0.911
28 H 0.214 0.786
29 H 0.157 0.843
30 H 0.179 0.821
31 H 0.108 0.892
32 H 0.135 0.865
33 H 0.068 0.932
34 H 0.089 0.911
35 H 0.068 0.932
36 H 0.201 0.799
37 H 0.058 0.942
38 H 0.067 0.933
39 H 0.087 0.913
40 H 0.094 0.906
41 H 0.102 0.898
42 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -13.060 12.710 13.895 22.917
hybrid contribution 0.005 -1.185 -0.784 1.421
sum -13.055 11.525 13.111 21.798
Atomic orbital electron populations
1.20070 0.87328 1.03187 1.01870 1.20557 0.98523 0.91481 1.16004
1.24279 0.89918 1.01226 1.00173 1.77382 1.22459 0.90008 1.24029
1.48186 1.05572 1.04344 1.57425 1.21838 0.84749 0.95613 0.98633
1.21129 0.81789 0.81723 0.86880 1.90745 1.72980 1.32350 1.48683
1.48224 1.20385 1.36209 1.28890 1.22124 1.02690 0.84950 0.91284
1.22530 0.99736 0.97360 0.98563 1.20431 0.95632 0.85980 0.91581
1.42671 1.45030 1.23548 1.26583 1.19599 1.11838 1.00372 1.04786
0.90143 1.25558 1.02741 1.00964 0.97832 1.69822 1.46508 1.28752
1.17329 0.85245 0.79273 0.78308 0.77153 1.20060 1.22760 1.20550
1.22052 1.00565 0.95365 0.98554 1.21466 0.94327 0.96199 0.87821
1.22968 0.83105 1.01748 1.01722 0.92155 0.90758 0.91070 0.78629
0.84251 0.82093 0.89169 0.86520 0.93171 0.91093 0.93249 0.79945
0.94216 0.93260 0.91311 0.90636 0.89805 0.77651
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.82 10.37 71.24 0.74 -0.08 16
2 C -0.25 -4.87 6.10 -20.14 -0.12 -5.00 16
3 C 0.03 0.71 11.96 85.24 1.02 1.73 16
4 N -0.32 -9.14 11.64 -57.02 -0.66 -9.81 16
5 N -0.37 -8.56 3.40 -351.81 -1.20 -9.76 16
6 C 0.12 2.00 5.34 85.63 0.46 2.46 16
7 C 0.50 13.05 7.73 87.66 0.68 13.73 16
8 O -0.57 -20.76 15.12 -3.04 -0.05 -20.80 16
9 N -0.60 -14.46 2.97 -817.98 -2.43 -16.88 16
10 C 0.11 2.09 6.37 86.51 0.55 2.64 16
11 C -0.14 -3.98 5.67 30.82 0.17 -3.81 16
12 C 0.17 6.08 2.73 45.02 0.12 6.21 16
13 N -0.74 -35.34 5.12 -322.82 -1.65 -36.99 16
14 C -0.23 -12.30 9.93 84.03 0.83 -11.47 16
15 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16
16 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16
17 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16
18 Si 0.97 44.67 29.55 68.60 2.03 46.70 16
19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16
20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16
21 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16
22 C -0.13 -4.03 5.55 30.69 0.17 -3.86 16
23 C 0.13 3.40 6.43 86.38 0.56 3.95 16
24 C 0.05 0.90 11.36 83.54 0.95 1.85 16
25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
28 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16
29 H 0.14 1.66 7.93 -2.39 -0.02 1.64 16
30 H 0.16 1.54 7.63 -2.39 -0.02 1.52 16
31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.12 1.25 5.93 -2.39 -0.01 1.24 16
33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16
36 H 0.37 19.54 7.80 -92.71 -0.72 18.82 16
37 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16
38 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16
39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16
40 H 0.08 2.28 7.01 -2.38 -0.02 2.27 16
41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
42 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16
Total: -1.00 -77.65 347.12 3.21 -74.44
By element:
Atomic # 1 Polarization: 26.82 SS G_CDS: 0.30 Total: 27.12 kcal
Atomic # 6 Polarization: -2.19 SS G_CDS: 6.59 Total: 4.41 kcal
Atomic # 7 Polarization: -126.20 SS G_CDS: -5.66 Total: -131.86 kcal
Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.80 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -77.65 3.21 -74.44 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000990128508.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.896 kcal
(2) G-P(sol) polarization free energy of solvation -77.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.244 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.458 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds