Wall clock time and date at job start Tue Mar 31 2020 03:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30446 * 125.98661 * 2 1 4 4 N 1.39928 * 108.89644 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.75296 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49300 * 359.97438 * 4 3 2 7 7 C 1.38042 * 107.41927 * 0.02562 * 6 4 3 8 8 C 1.47428 * 126.41945 * 180.26209 * 7 6 4 9 9 O 1.21594 * 120.00326 * 220.75879 * 8 7 6 10 10 N 1.34780 * 119.99848 * 40.75345 * 8 7 6 11 11 C 1.46928 * 120.62941 * 5.25308 * 10 8 7 12 12 C 1.53621 * 108.54535 * 126.36619 * 11 10 8 13 13 C 1.53041 * 109.24141 * 54.85381 * 12 11 10 14 14 N 1.46501 * 109.45843 * 178.49057 * 13 12 11 15 15 C 1.36934 * 120.00084 * 275.07052 * 14 13 12 16 16 H 1.07995 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00016 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99688 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47765 * 89.99418 * 19 17 15 21 21 H 1.48501 * 109.46937 * 209.99458 * 19 17 15 22 22 H 1.48507 * 109.46927 * 329.99059 * 19 17 15 23 23 C 1.53041 * 109.54008 * 298.50913 * 13 12 11 24 24 C 1.46920 * 120.63392 * 185.52571 * 10 8 7 25 25 H 1.08997 * 109.47171 * 269.95459 * 1 2 3 26 26 H 1.08992 * 109.47192 * 29.95987 * 1 2 3 27 27 H 1.09005 * 109.46661 * 149.95884 * 1 2 3 28 28 H 1.08997 * 109.46835 * 89.97235 * 5 4 3 29 29 H 1.09008 * 109.46995 * 209.97058 * 5 4 3 30 30 H 1.09001 * 109.47255 * 329.96993 * 5 4 3 31 31 H 1.08010 * 126.29144 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.58555 * 246.19772 * 11 10 8 33 33 H 1.09005 * 109.58902 * 6.62158 * 11 10 8 34 34 H 1.09000 * 109.63334 * 294.86438 * 12 11 10 35 35 H 1.08997 * 109.43443 * 174.72659 * 12 11 10 36 36 H 1.08999 * 109.45969 * 58.53539 * 13 12 11 37 37 H 0.97007 * 119.99934 * 95.07132 * 14 13 12 38 38 H 0.97000 * 119.99501 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49679 * 301.41896 * 23 13 12 40 40 H 1.08997 * 109.52784 * 181.32796 * 23 13 12 41 41 H 1.09004 * 109.58564 * 353.37889 * 24 10 8 42 42 H 1.09005 * 109.58706 * 113.65562 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6110 0.6443 -0.0006 5 6 4.7787 1.5292 -0.0003 6 6 3.6439 -0.6979 -0.0004 7 6 2.3373 -1.1432 -0.0003 8 6 1.8916 -2.5485 0.0054 9 8 0.9485 -2.8900 -0.6819 10 7 2.5296 -3.4547 0.7724 11 6 3.5954 -3.0379 1.6938 12 6 3.2592 -3.5612 3.0985 13 6 3.0409 -5.0745 3.0340 14 7 2.7554 -5.5841 4.3776 15 6 3.7850 -5.8994 5.2234 16 1 4.8076 -5.7728 4.9000 17 6 3.5145 -6.3827 6.4963 18 7 2.2682 -6.5375 6.8902 19 14 4.9190 -6.8121 7.6504 20 1 5.2844 -5.6166 8.4519 21 1 4.4954 -7.9071 8.5597 22 1 6.0940 -7.2543 6.8571 23 6 1.8602 -5.3825 2.1104 24 6 2.1767 -4.8790 0.6986 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8897 -0.5145 28 1 5.0681 1.7483 1.0275 29 1 5.6059 1.0394 -0.5142 30 1 4.5307 2.4581 -0.5138 31 1 4.5299 -1.3157 -0.0003 32 1 4.5473 -3.4542 1.3639 33 1 3.6572 -1.9497 1.7128 34 1 2.3523 -3.0779 3.4620 35 1 4.0852 -3.3412 3.7748 36 1 3.9396 -5.5549 2.6471 37 1 1.8368 -5.6982 4.6680 38 1 2.0791 -6.8749 7.7798 39 1 0.9665 -4.8821 2.4832 40 1 1.6900 -6.4588 2.0831 41 1 1.3021 -5.0062 0.0606 42 1 3.0143 -5.4422 0.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990325414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:21 Heat of formation + Delta-G solvation = 55.064921 kcal Electronic energy + Delta-G solvation = -23635.578855 eV Core-core repulsion = 20231.677528 eV Total energy + Delta-G solvation = -3403.901326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61823 -39.52213 -37.20940 -34.48569 -34.14109 -32.24095 -31.24778 -30.18011 -29.52569 -29.07487 -26.22507 -24.81515 -23.11400 -22.94060 -21.74844 -20.60701 -19.87644 -18.89068 -17.27353 -16.97866 -16.48791 -15.86033 -15.57109 -14.94935 -14.78490 -14.30827 -13.88532 -13.72645 -13.67798 -13.50041 -13.44615 -13.14728 -13.00476 -12.61507 -12.47745 -12.18674 -12.14972 -11.89501 -11.50680 -10.99488 -10.94906 -10.85620 -10.80533 -10.45574 -10.24369 -9.82166 -9.72887 -9.67312 -9.45609 -8.92715 -8.72580 -8.38831 -6.98365 -5.78608 -3.07747 1.43329 2.13208 2.16584 3.07029 3.38325 3.40996 3.45987 3.48113 4.16839 4.43915 4.56314 4.69833 4.79268 4.88820 5.04542 5.10284 5.14368 5.35132 5.38923 5.41765 5.46705 5.53685 5.60881 5.64422 5.74103 5.80693 5.88224 5.96808 6.04785 6.24585 6.39246 6.40016 6.44516 6.53312 6.60471 6.69758 6.91972 7.05594 7.43534 7.61896 7.66704 8.37020 8.39738 9.50831 10.09003 10.43627 11.44010 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.003682 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.425166 B = 7602.448905 C = 8270.804749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.127 3.873 3 N -0.303 5.303 4 N -0.365 5.365 5 C 0.098 3.902 6 C 0.096 3.904 7 C -0.279 4.279 8 C 0.595 3.405 9 O -0.547 6.547 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.149 4.149 13 C 0.179 3.821 14 N -0.725 5.725 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.139 4.139 24 C 0.118 3.882 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.300 13.701 -15.658 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 N -0.125 5.125 4 N -0.143 5.143 5 C -0.043 4.043 6 C -0.054 4.054 7 C -0.294 4.294 8 C 0.384 3.616 9 O -0.426 6.426 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.190 4.190 13 C 0.069 3.931 14 N -0.365 5.365 15 C -0.371 4.371 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.178 4.178 24 C -0.005 4.005 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.201 0.799 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.143 14.828 -15.915 22.143 hybrid contribution 0.802 -1.059 1.050 1.693 sum 4.944 13.769 -14.865 20.857 Atomic orbital electron populations 1.20342 0.85906 1.04253 1.03473 1.22395 0.97120 0.88746 0.95767 1.77148 0.85992 1.22609 1.26729 1.48258 1.06070 1.04708 1.55309 1.21971 0.83760 0.94634 1.03938 1.23095 0.98892 0.85040 0.98409 1.20187 0.92290 0.94588 1.22295 1.17291 0.81785 0.83559 0.78988 1.90718 1.28295 1.80249 1.43323 1.48018 1.37528 1.07690 1.40281 1.22105 0.89479 0.99981 0.90485 1.22730 1.02265 1.00215 0.93813 1.20168 0.95220 0.91041 0.86678 1.42445 1.06722 1.76989 1.10324 1.19227 0.87999 1.35809 0.94094 0.91207 1.24747 0.96194 1.02216 0.97742 1.69665 1.16863 1.52052 1.19425 0.86215 0.81389 0.77718 0.81003 1.21776 1.21781 1.20769 1.22197 0.99966 1.01469 0.94130 1.21607 1.01313 0.79444 0.98092 0.90242 0.90760 0.88822 0.90151 0.89144 0.88998 0.79924 0.91704 0.90314 0.92184 0.90882 0.93480 0.78246 0.93489 0.91774 0.90586 0.89251 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.27 36.01 0.37 -0.58 16 2 C 0.13 1.73 7.26 -82.02 -0.60 1.14 16 3 N -0.30 -3.98 12.50 33.90 0.42 -3.56 16 4 N -0.37 -3.76 3.98 -67.59 -0.27 -4.03 16 5 C 0.10 0.53 11.44 59.85 0.68 1.21 16 6 C 0.10 1.00 9.10 -16.56 -0.15 0.85 16 7 C -0.28 -3.77 5.21 -105.07 -0.55 -4.32 16 8 C 0.60 9.14 7.44 -12.52 -0.09 9.04 16 9 O -0.55 -9.84 15.20 5.28 0.08 -9.76 16 10 N -0.60 -8.58 2.97 -173.76 -0.52 -9.10 16 11 C 0.10 1.33 5.52 -3.49 -0.02 1.31 16 12 C -0.15 -2.50 5.67 -26.39 -0.15 -2.65 16 13 C 0.18 3.39 2.73 -67.89 -0.19 3.21 16 14 N -0.72 -17.73 5.12 -53.39 -0.27 -18.00 16 15 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 19 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 C 0.12 1.69 6.44 -3.71 -0.02 1.66 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.20 6.83 -51.93 -0.35 0.84 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.18 1.30 7.36 -52.48 -0.39 0.92 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.08 0.92 4.80 -51.93 -0.25 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -34.18 343.31 -7.07 -41.25 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.29 Total: 6.92 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -1.10 Total: 1.34 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.09 Total: -61.88 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.18 -7.07 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.313 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds