Wall clock time and date at job start Tue Mar 31 2020 03:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30446 * 125.98661 * 2 1 4 4 N 1.39928 * 108.89644 * 180.02562 * 3 2 1 5 5 C 1.46504 * 125.75296 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49300 * 359.97438 * 4 3 2 7 7 C 1.38042 * 107.41927 * 0.02562 * 6 4 3 8 8 C 1.47428 * 126.41945 * 180.26209 * 7 6 4 9 9 O 1.21594 * 120.00326 * 220.75879 * 8 7 6 10 10 N 1.34780 * 119.99848 * 40.75345 * 8 7 6 11 11 C 1.46928 * 120.62941 * 5.25308 * 10 8 7 12 12 C 1.53621 * 108.54535 * 126.36619 * 11 10 8 13 13 C 1.53041 * 109.24141 * 54.85381 * 12 11 10 14 14 N 1.46501 * 109.45843 * 178.49057 * 13 12 11 15 15 C 1.36934 * 120.00084 * 275.07052 * 14 13 12 16 16 H 1.07995 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.38816 * 120.00016 * 180.02562 * 15 14 13 18 18 N 1.31620 * 119.99688 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00104 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47765 * 89.99418 * 19 17 15 21 21 H 1.48501 * 109.46937 * 209.99458 * 19 17 15 22 22 H 1.48507 * 109.46927 * 329.99059 * 19 17 15 23 23 C 1.53041 * 109.54008 * 298.50913 * 13 12 11 24 24 C 1.46920 * 120.63392 * 185.52571 * 10 8 7 25 25 H 1.08997 * 109.47171 * 269.95459 * 1 2 3 26 26 H 1.08992 * 109.47192 * 29.95987 * 1 2 3 27 27 H 1.09005 * 109.46661 * 149.95884 * 1 2 3 28 28 H 1.08997 * 109.46835 * 89.97235 * 5 4 3 29 29 H 1.09008 * 109.46995 * 209.97058 * 5 4 3 30 30 H 1.09001 * 109.47255 * 329.96993 * 5 4 3 31 31 H 1.08010 * 126.29144 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.58555 * 246.19772 * 11 10 8 33 33 H 1.09005 * 109.58902 * 6.62158 * 11 10 8 34 34 H 1.09000 * 109.63334 * 294.86438 * 12 11 10 35 35 H 1.08997 * 109.43443 * 174.72659 * 12 11 10 36 36 H 1.08999 * 109.45969 * 58.53539 * 13 12 11 37 37 H 0.97007 * 119.99934 * 95.07132 * 14 13 12 38 38 H 0.97000 * 119.99501 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49679 * 301.41896 * 23 13 12 40 40 H 1.08997 * 109.52784 * 181.32796 * 23 13 12 41 41 H 1.09004 * 109.58564 * 353.37889 * 24 10 8 42 42 H 1.09005 * 109.58706 * 113.65562 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6110 0.6443 -0.0006 5 6 4.7787 1.5292 -0.0003 6 6 3.6439 -0.6979 -0.0004 7 6 2.3373 -1.1432 -0.0003 8 6 1.8916 -2.5485 0.0054 9 8 0.9485 -2.8900 -0.6819 10 7 2.5296 -3.4547 0.7724 11 6 3.5954 -3.0379 1.6938 12 6 3.2592 -3.5612 3.0985 13 6 3.0409 -5.0745 3.0340 14 7 2.7554 -5.5841 4.3776 15 6 3.7850 -5.8994 5.2234 16 1 4.8076 -5.7728 4.9000 17 6 3.5145 -6.3827 6.4963 18 7 2.2682 -6.5375 6.8902 19 14 4.9190 -6.8121 7.6504 20 1 5.2844 -5.6166 8.4519 21 1 4.4954 -7.9071 8.5597 22 1 6.0940 -7.2543 6.8571 23 6 1.8602 -5.3825 2.1104 24 6 2.1767 -4.8790 0.6986 25 1 -0.3633 -0.0008 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8897 -0.5145 28 1 5.0681 1.7483 1.0275 29 1 5.6059 1.0394 -0.5142 30 1 4.5307 2.4581 -0.5138 31 1 4.5299 -1.3157 -0.0003 32 1 4.5473 -3.4542 1.3639 33 1 3.6572 -1.9497 1.7128 34 1 2.3523 -3.0779 3.4620 35 1 4.0852 -3.3412 3.7748 36 1 3.9396 -5.5549 2.6471 37 1 1.8368 -5.6982 4.6680 38 1 2.0791 -6.8749 7.7798 39 1 0.9665 -4.8821 2.4832 40 1 1.6900 -6.4588 2.0831 41 1 1.3021 -5.0062 0.0606 42 1 3.0143 -5.4422 0.2868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990325414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:20 Heat of formation + Delta-G solvation = 31.578963 kcal Electronic energy + Delta-G solvation = -23636.597282 eV Core-core repulsion = 20231.677528 eV Total energy + Delta-G solvation = -3404.919754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.51050 -40.68791 -38.57691 -36.11535 -34.93471 -33.89835 -32.52983 -31.29914 -30.71389 -30.29238 -27.20068 -26.25814 -24.59494 -24.19873 -22.86739 -21.70862 -21.05942 -19.99361 -19.06099 -18.19432 -17.50130 -16.72017 -16.64550 -16.56318 -15.97661 -15.47221 -15.35248 -15.22155 -14.90237 -14.72857 -14.41541 -14.23396 -14.07580 -13.69895 -13.36038 -13.29245 -13.13195 -13.01057 -12.95140 -12.81502 -12.56595 -12.19542 -12.13060 -11.97614 -11.86295 -11.66426 -11.27774 -10.94933 -10.82840 -10.31131 -9.73011 -9.48825 -8.97974 -7.91004 -5.19800 0.60091 1.12978 1.47330 1.49667 1.51060 1.59401 1.96233 2.30864 2.58985 3.37331 3.42828 3.72271 3.79805 3.88144 4.01926 4.07702 4.17240 4.22978 4.39414 4.40693 4.44536 4.46063 4.53537 4.66447 4.69754 4.73323 4.79550 4.88762 4.90006 4.93210 4.95924 5.07170 5.11154 5.35297 5.48447 5.52709 5.57394 5.67410 5.92967 6.30498 6.44824 6.59048 7.22920 7.36319 8.12757 8.35496 9.32967 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020382 B = 0.003682 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.425166 B = 7602.448905 C = 8270.804749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.108 3.892 3 N -0.327 5.327 4 N -0.359 5.359 5 C 0.086 3.914 6 C 0.117 3.883 7 C -0.314 4.314 8 C 0.596 3.404 9 O -0.583 6.583 10 N -0.602 5.602 11 C 0.114 3.886 12 C -0.140 4.140 13 C 0.174 3.826 14 N -0.740 5.740 15 C -0.234 4.234 16 H 0.082 0.918 17 C -0.079 4.079 18 N -0.974 5.974 19 Si 0.971 3.029 20 H -0.289 1.289 21 H -0.301 1.301 22 H -0.265 1.265 23 C -0.128 4.128 24 C 0.125 3.875 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.095 0.905 31 H 0.223 0.777 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.369 0.631 38 H 0.249 0.751 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 14.691 -16.854 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 N -0.150 5.150 4 N -0.137 5.137 5 C -0.053 4.053 6 C -0.035 4.035 7 C -0.329 4.329 8 C 0.386 3.614 9 O -0.464 6.464 10 N -0.334 5.334 11 C -0.009 4.009 12 C -0.181 4.181 13 C 0.066 3.934 14 N -0.379 5.379 15 C -0.366 4.366 16 H 0.100 0.900 17 C -0.271 4.271 18 N -0.625 5.625 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.228 1.228 22 H -0.190 1.190 23 C -0.167 4.167 24 C 0.002 3.998 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.240 0.760 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.200 0.800 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.362 15.868 -17.155 24.501 hybrid contribution -0.144 -1.289 1.355 1.876 sum 7.218 14.579 -15.800 22.678 Atomic orbital electron populations 1.20304 0.85778 1.04108 1.03539 1.22617 0.97768 0.89212 0.96260 1.77088 0.87554 1.22835 1.27515 1.48685 1.06119 1.05426 1.53443 1.22427 0.82857 0.94601 1.05402 1.23583 0.98833 0.85328 0.95779 1.20161 0.93891 0.93435 1.25388 1.17571 0.81119 0.84315 0.78439 1.90694 1.29862 1.80933 1.44913 1.48060 1.37712 1.07451 1.40187 1.22134 0.90159 1.01110 0.87495 1.22520 1.00890 0.98184 0.96474 1.20433 0.96273 0.92247 0.84472 1.42709 1.05533 1.77465 1.12192 1.19667 0.89003 1.33650 0.94247 0.89995 1.25564 0.98379 1.03485 0.99697 1.69837 1.19034 1.54156 1.19479 0.85165 0.79000 0.76941 0.78828 1.21623 1.22773 1.18976 1.22062 0.98250 1.01242 0.95191 1.21538 1.02223 0.79957 0.96064 0.90063 0.89408 0.90381 0.88861 0.85739 0.88629 0.76047 0.88286 0.88566 0.94630 0.91530 0.92610 0.80017 0.94258 0.93749 0.90836 0.89864 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.27 71.24 0.73 -1.16 16 2 C 0.11 2.88 7.26 43.52 0.32 3.20 16 3 N -0.33 -8.14 12.50 -46.67 -0.58 -8.72 16 4 N -0.36 -6.28 3.98 -367.76 -1.46 -7.74 16 5 C 0.09 0.59 11.44 127.77 1.46 2.05 16 6 C 0.12 2.02 9.10 84.28 0.77 2.78 16 7 C -0.31 -7.98 5.21 -20.15 -0.11 -8.09 16 8 C 0.60 17.66 7.44 86.66 0.64 18.31 16 9 O -0.58 -21.09 15.20 -4.01 -0.06 -21.15 16 10 N -0.60 -15.94 2.97 -821.93 -2.44 -18.38 16 11 C 0.11 2.56 5.52 86.51 0.48 3.03 16 12 C -0.14 -4.49 5.67 30.82 0.17 -4.32 16 13 C 0.17 6.40 2.73 45.02 0.12 6.53 16 14 N -0.74 -36.42 5.12 -322.81 -1.65 -38.07 16 15 C -0.23 -12.50 9.93 84.03 0.83 -11.67 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 18 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 19 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 C -0.13 -4.21 5.55 30.67 0.17 -4.04 16 24 C 0.12 3.38 6.44 86.36 0.56 3.93 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 2.10 6.83 -2.38 -0.02 2.08 16 28 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.22 1.89 7.36 -2.91 -0.02 1.86 16 32 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.10 1.89 4.80 -2.38 -0.01 1.88 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 37 H 0.37 20.09 7.80 -92.70 -0.72 19.36 16 38 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 42 H 0.09 2.04 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -76.09 343.31 3.03 -73.05 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.31 Total: 26.68 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.62 Total: 6.54 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -5.86 Total: -132.29 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.09 3.03 -73.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990325414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.634 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds