Wall clock time and date at job start Tue Mar 31 2020 04:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35035 * 126.38278 * 2 1 4 4 H 0.96999 * 124.88455 * 359.96037 * 3 2 1 5 5 N 1.28469 * 110.23312 * 179.97438 * 3 2 1 6 6 C 1.31815 * 110.06865 * 359.71348 * 5 3 2 7 7 C 1.47706 * 126.51564 * 180.31454 * 6 5 3 8 8 O 1.21578 * 119.99779 * 186.51323 * 7 6 5 9 9 N 1.34775 * 120.00157 * 6.51383 * 7 6 5 10 10 C 1.46921 * 120.63390 * 6.71140 * 9 7 6 11 11 C 1.53626 * 108.54365 * 126.36710 * 10 9 7 12 12 C 1.53037 * 109.23965 * 54.86091 * 11 10 9 13 13 N 1.46498 * 109.45906 * 178.48850 * 12 11 10 14 14 C 1.36939 * 119.99950 * 275.06822 * 13 12 11 15 15 H 1.07994 * 120.00042 * 359.97438 * 14 13 12 16 16 C 1.38814 * 119.99828 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00180 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47421 * 89.99601 * 18 16 14 20 20 H 1.48497 * 109.47293 * 210.00333 * 18 16 14 21 21 H 1.48506 * 109.47013 * 329.99853 * 18 16 14 22 22 C 1.53045 * 109.53873 * 298.50903 * 12 11 10 23 23 C 1.46934 * 120.62819 * 186.99214 * 9 7 6 24 24 C 1.35364 * 126.38843 * 179.97438 * 2 1 3 25 25 C 1.50702 * 127.24661 * 0.02562 * 24 2 1 26 26 H 1.09006 * 109.47253 * 270.02489 * 1 2 3 27 27 H 1.08997 * 109.46979 * 30.02332 * 1 2 3 28 28 H 1.09000 * 109.47009 * 150.02910 * 1 2 3 29 29 H 1.09002 * 109.59112 * 246.20606 * 10 9 7 30 30 H 1.09002 * 109.58223 * 6.62963 * 10 9 7 31 31 H 1.09004 * 109.63343 * 294.86746 * 11 10 9 32 32 H 1.08996 * 109.42824 * 174.72695 * 11 10 9 33 33 H 1.09001 * 109.45001 * 58.51978 * 12 11 10 34 34 H 0.97008 * 119.99880 * 95.06765 * 13 12 11 35 35 H 0.96993 * 119.99966 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.49520 * 301.41765 * 22 12 11 37 37 H 1.08997 * 109.52066 * 181.33253 * 22 12 11 38 38 H 1.08991 * 109.58831 * 353.37673 * 23 9 7 39 39 H 1.09004 * 109.58298 * 113.66095 * 23 9 7 40 40 H 1.08996 * 109.46937 * 90.02683 * 25 24 2 41 41 H 1.08995 * 109.47155 * 330.02601 * 25 24 2 42 42 H 1.09001 * 109.46701 * 210.01867 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9965 2.0057 -0.0006 5 7 3.5420 0.7298 0.0005 6 6 3.6321 -0.5853 0.0071 7 6 4.8765 -1.3809 0.0164 8 8 4.8256 -2.5903 -0.0976 9 7 6.0684 -0.7664 0.1512 10 6 6.1404 0.6731 0.4363 11 6 7.0140 0.8811 1.6828 12 6 8.3743 0.2157 1.4621 13 7 9.2242 0.4421 2.6337 14 6 9.9518 1.5974 2.7387 15 1 9.8995 2.3414 1.9577 16 6 10.7575 1.8117 3.8486 17 7 10.8217 0.9046 4.8003 18 14 11.7496 3.3879 3.9924 19 1 10.9409 4.4199 4.6897 20 1 12.9891 3.1238 4.7663 21 1 12.1074 3.8730 2.6352 22 6 8.1809 -1.2883 1.2555 23 6 7.3205 -1.5221 0.0098 24 6 2.3101 -1.0897 0.0005 25 6 1.8855 -2.5357 0.0006 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 6.5825 1.1924 -0.4140 30 1 5.1382 1.0593 0.6222 31 1 6.5270 0.4349 2.5500 32 1 7.1544 1.9485 1.8531 33 1 8.8496 0.6452 0.5802 34 1 9.2715 -0.2264 3.3350 35 1 11.3844 1.0545 5.5759 36 1 7.6830 -1.7141 2.1266 37 1 9.1517 -1.7654 1.1218 38 1 7.0972 -2.5846 -0.0861 39 1 7.8557 -1.1798 -0.8760 40 1 1.7839 -2.8846 -1.0270 41 1 0.9288 -2.6334 0.5137 42 1 2.6367 -3.1348 0.5151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990389975.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:15 Heat of formation + Delta-G solvation = 52.229144 kcal Electronic energy + Delta-G solvation = -23590.572968 eV Core-core repulsion = 20186.548673 eV Total energy + Delta-G solvation = -3404.024295 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.91076 -39.63389 -37.21801 -34.50573 -33.64763 -32.83179 -31.83590 -30.61442 -29.25465 -28.46208 -26.34085 -25.32586 -23.74343 -22.85793 -21.99399 -20.23196 -20.02781 -18.71418 -17.83947 -17.04022 -16.52745 -16.17955 -15.66267 -14.79429 -14.70562 -14.13974 -13.86312 -13.71263 -13.42813 -13.37682 -13.26186 -13.13118 -13.04200 -12.80572 -12.55087 -12.38427 -12.10138 -11.73141 -11.52727 -10.96524 -10.88109 -10.75111 -10.59141 -10.23055 -10.19099 -9.80219 -9.73534 -9.60002 -9.41088 -8.88251 -8.80284 -8.34399 -6.92781 -5.74238 -3.02914 1.48805 1.90963 2.62623 3.21772 3.44213 3.46609 3.49400 3.51154 4.29314 4.41921 4.60557 4.65490 4.99767 5.08230 5.11149 5.36151 5.42234 5.43648 5.48206 5.55180 5.59258 5.65184 5.70655 5.78117 5.80243 5.92561 6.02901 6.06056 6.20373 6.31115 6.41506 6.50411 6.52508 6.60661 6.71265 6.87911 7.02093 7.14150 7.56961 7.71696 7.77697 8.33204 8.44336 9.55243 10.13887 10.48799 11.48518 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.003435 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.424411 B = 8148.923147 C = 8809.258453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 N -0.385 5.385 4 H 0.443 0.557 5 N -0.252 5.252 6 C -0.001 4.001 7 C 0.599 3.401 8 O -0.540 6.540 9 N -0.592 5.592 10 C 0.087 3.913 11 C -0.147 4.147 12 C 0.178 3.822 13 N -0.725 5.725 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.138 4.138 23 C 0.116 3.884 24 C -0.146 4.146 25 C -0.076 4.076 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.716 -1.921 -11.827 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 N -0.098 5.098 4 H 0.288 0.712 5 N -0.088 5.088 6 C -0.161 4.161 7 C 0.385 3.615 8 O -0.417 6.417 9 N -0.324 5.324 10 C -0.037 4.037 11 C -0.189 4.189 12 C 0.068 3.932 13 N -0.365 5.365 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.177 4.177 23 C -0.006 4.006 24 C -0.156 4.156 25 C -0.134 4.134 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.938 -1.485 -11.910 24.134 hybrid contribution 0.078 0.818 0.506 0.965 sum -20.860 -0.667 -11.404 23.783 Atomic orbital electron populations 1.20334 0.86672 1.03816 1.03306 1.21198 0.95147 0.86977 1.08508 1.43403 1.03261 1.09434 1.53719 0.71243 1.73509 1.00692 1.14805 1.19770 1.21894 0.94918 0.89553 1.09784 1.16971 0.81557 0.86140 0.76792 1.90735 1.86281 1.13029 1.51622 1.48003 1.05133 1.10643 1.68616 1.22635 1.03775 0.79111 0.98147 1.22715 0.97811 1.02261 0.96081 1.20200 0.89807 0.91661 0.91576 1.42447 1.51268 1.21771 1.21028 1.19245 1.18440 0.95829 1.03309 0.91196 1.24746 1.00814 0.98313 0.97198 1.69666 1.43471 1.34565 1.10466 0.86205 0.79608 0.83081 0.77396 1.21810 1.21822 1.20775 1.22191 0.99550 0.98720 0.97232 1.21659 0.83383 0.97328 0.98232 1.20094 0.90622 0.96652 1.08242 1.20156 1.01230 0.89763 1.02260 0.90334 0.91161 0.89588 0.91976 0.86478 0.92509 0.90919 0.93478 0.78297 0.93550 0.91804 0.90553 0.89264 0.91466 0.91505 0.92125 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 36.01 0.37 -0.04 16 2 C 0.01 0.07 7.23 -82.21 -0.59 -0.53 16 3 N -0.38 -3.51 6.83 33.50 0.23 -3.28 16 4 H 0.44 2.35 8.96 -190.44 -1.71 0.64 16 5 N -0.25 -3.22 8.70 33.42 0.29 -2.93 16 6 C 0.00 -0.02 6.83 -82.76 -0.57 -0.58 16 7 C 0.60 9.94 7.69 -12.39 -0.10 9.84 16 8 O -0.54 -9.85 14.62 5.30 0.08 -9.78 16 9 N -0.59 -9.49 2.97 -173.66 -0.52 -10.01 16 10 C 0.09 1.35 6.15 -3.49 -0.02 1.33 16 11 C -0.15 -2.72 5.67 -26.39 -0.15 -2.87 16 12 C 0.18 3.59 2.73 -67.89 -0.19 3.40 16 13 N -0.72 -18.39 5.12 -53.39 -0.27 -18.66 16 14 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -28.48 13.06 55.49 0.72 -27.75 16 18 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.14 -2.42 5.55 -26.61 -0.15 -2.57 16 23 C 0.12 1.80 6.44 -3.71 -0.02 1.78 16 24 C -0.15 -1.76 6.24 -104.40 -0.65 -2.42 16 25 C -0.08 -0.80 9.56 36.01 0.34 -0.46 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.36 7.98 -51.93 -0.41 -0.05 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.75 4.15 -72.21 -0.30 1.45 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.38 10.43 7.80 -40.82 -0.32 10.11 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.48 7.99 -51.93 -0.42 0.06 16 42 H 0.08 1.04 6.84 -51.93 -0.36 0.69 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -33.92 340.05 -8.98 -42.90 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.64 Total: 7.30 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.97 Total: -0.38 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: 0.46 Total: -62.64 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.92 -8.98 -42.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990389975.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.133 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds