Wall clock time and date at job start Tue Mar 31 2020 04:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35841 * 126.13708 * 2 1 4 4 N 1.30174 * 109.00545 * 179.97438 * 3 2 1 5 5 C 1.35759 * 108.86724 * 0.02562 * 4 3 2 6 6 C 1.47325 * 126.23959 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00224 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99475 * 0.02562 * 6 5 4 9 9 C 1.47014 * 125.65128 * 0.02963 * 8 6 5 10 10 C 1.54322 * 107.27201 * 181.02074 * 9 8 6 11 11 H 1.09011 * 110.72253 * 263.83106 * 10 9 8 12 12 N 1.46500 * 110.72292 * 140.55680 * 10 9 8 13 13 C 1.36938 * 119.99919 * 86.45539 * 12 10 9 14 14 H 1.07995 * 119.99859 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99867 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00001 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00059 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47404 * 59.99825 * 17 15 13 19 19 H 1.48500 * 109.47604 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.47170 * 300.00053 * 17 15 13 21 21 C 1.55159 * 102.94257 * 22.19159 * 10 9 8 22 22 C 1.53004 * 111.00108 * 82.57174 * 21 10 9 23 23 C 1.53003 * 111.00559 * 206.38718 * 21 10 9 24 24 C 1.47425 * 125.64463 * 179.72059 * 8 6 5 25 25 C 1.35383 * 126.13250 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47498 * 90.02665 * 1 2 3 27 27 H 1.09008 * 109.47552 * 210.02642 * 1 2 3 28 28 H 1.09002 * 109.47153 * 330.02516 * 1 2 3 29 29 H 1.08003 * 125.50153 * 359.96924 * 3 2 1 30 30 H 1.09000 * 109.88689 * 300.43586 * 9 8 6 31 31 H 1.09000 * 109.88184 * 61.45022 * 9 8 6 32 32 H 0.97001 * 120.00196 * 266.45533 * 12 10 9 33 33 H 0.96997 * 119.99537 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47003 * 60.00184 * 22 21 10 35 35 H 1.08997 * 109.46977 * 179.97438 * 22 21 10 36 36 H 1.08991 * 109.47199 * 300.00322 * 22 21 10 37 37 H 1.08998 * 109.47054 * 59.99775 * 23 21 10 38 38 H 1.08994 * 109.46724 * 180.02562 * 23 21 10 39 39 H 1.09004 * 109.46921 * 300.00309 * 23 21 10 40 40 H 1.09003 * 110.36598 * 274.74835 * 24 8 6 41 41 H 1.09002 * 110.36988 * 37.07026 * 24 8 6 42 42 H 1.08001 * 126.56392 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2660 1.0971 0.0000 4 7 3.5100 0.7136 0.0006 5 6 3.5511 -0.6434 0.0003 6 6 4.7652 -1.4779 0.0003 7 8 4.6697 -2.6904 -0.0004 8 7 5.9817 -0.8976 0.0009 9 6 6.2407 0.5495 0.0024 10 6 7.7718 0.7409 -0.0236 11 1 8.1586 0.8933 0.9842 12 7 8.1398 1.8588 -0.8960 13 6 8.1637 3.1350 -0.4003 14 1 7.9109 3.3175 0.6336 15 6 8.5119 4.1943 -1.2272 16 7 8.8185 3.9720 -2.4877 17 14 8.5438 5.9354 -0.5512 18 1 9.5203 6.0154 0.5646 19 1 8.9433 6.8772 -1.6277 20 1 7.1925 6.2980 -0.0533 21 6 8.2802 -0.6030 -0.6092 22 6 8.1965 -0.6019 -2.1370 23 6 9.7061 -0.9008 -0.1411 24 6 7.2729 -1.6091 0.0068 25 6 2.2632 -1.0934 -0.0005 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5134 29 1 1.9258 2.1221 -0.0005 30 1 5.7950 1.0068 -0.8809 31 1 5.8238 0.9998 0.9032 32 1 8.3665 1.6949 -1.8248 33 1 9.0621 4.7122 -3.0653 34 1 8.8103 0.2067 -2.5339 35 1 8.5593 -1.5552 -2.5213 36 1 7.1610 -0.4563 -2.4440 37 1 9.7255 -0.9641 0.9468 38 1 10.0377 -1.8479 -0.5666 39 1 10.3709 -0.1023 -0.4705 40 1 7.5619 -1.8623 1.0269 41 1 7.2132 -2.5087 -0.6058 42 1 1.9420 -2.1246 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995683451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:20 Heat of formation + Delta-G solvation = 50.032432 kcal Electronic energy + Delta-G solvation = -24021.250549 eV Core-core repulsion = 20617.130997 eV Total energy + Delta-G solvation = -3404.119551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.12586 -39.61358 -37.60937 -34.29244 -33.88540 -32.85545 -30.66961 -29.78448 -27.76717 -27.28976 -26.87365 -25.95939 -23.81618 -22.68427 -21.16922 -20.95725 -19.09326 -18.52097 -17.20201 -17.08734 -16.07943 -16.02872 -15.50285 -15.03517 -14.48572 -14.17846 -13.97856 -13.72347 -13.69726 -13.49972 -13.06029 -12.95633 -12.80321 -12.53965 -12.24507 -11.94749 -11.83061 -11.42455 -11.08465 -10.93485 -10.80650 -10.44996 -10.38974 -10.15224 -10.04244 -9.79700 -9.75270 -9.64973 -9.51149 -8.84292 -8.64589 -8.01662 -6.93611 -5.73194 -3.01748 1.66370 2.54860 2.55586 3.46654 3.49027 3.51813 3.53048 3.82635 4.40675 4.50953 4.63412 4.73067 4.76789 4.92968 5.02376 5.22771 5.27273 5.33585 5.47093 5.64353 5.75444 5.93409 5.98238 5.99313 6.00703 6.11776 6.16029 6.29561 6.42301 6.43909 6.49257 6.56839 6.79063 6.82717 6.84017 6.88012 7.00328 7.18226 7.75456 7.85894 8.04359 8.45618 8.59621 9.57373 10.13435 10.48826 11.49404 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.005319 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.193653 B = 5262.811372 C = 6993.659226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.464 5.464 3 C 0.180 3.820 4 N -0.444 5.444 5 C -0.052 4.052 6 C 0.611 3.389 7 O -0.565 6.565 8 N -0.596 5.596 9 C 0.093 3.907 10 C 0.176 3.824 11 H 0.062 0.938 12 N -0.711 5.711 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.087 4.087 22 C -0.131 4.131 23 C -0.128 4.128 24 C 0.118 3.882 25 C 0.023 3.977 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.211 0.789 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.851 -9.599 4.778 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.103 4.103 4 N -0.162 5.162 5 C -0.181 4.181 6 C 0.400 3.600 7 O -0.445 6.445 8 N -0.327 5.327 9 C -0.033 4.033 10 C 0.064 3.936 11 H 0.080 0.920 12 N -0.353 5.353 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.088 4.088 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.004 4.004 25 C -0.115 4.115 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.227 0.773 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.370 -9.535 4.847 17.122 hybrid contribution -0.913 0.676 0.026 1.136 sum -14.283 -8.859 4.872 17.499 Atomic orbital electron populations 1.22097 0.76223 1.04879 1.03858 1.45386 1.08009 1.07010 1.54292 1.25348 0.85299 0.93526 1.06167 1.70915 1.18767 1.10207 1.16311 1.20552 0.92916 0.90659 1.14017 1.16559 0.81190 0.85802 0.76463 1.90739 1.86659 1.13407 1.53684 1.48261 1.04415 1.09546 1.70467 1.23242 0.99568 0.77745 1.02708 1.21300 0.90509 0.86995 0.94787 0.92014 1.42500 1.80505 1.01662 1.10665 1.19218 1.38667 0.83846 0.95225 0.91167 1.24705 1.02352 0.97840 0.95754 1.69649 1.52904 1.30817 1.04784 0.86284 0.77721 0.84741 0.77520 1.21322 1.21826 1.21298 1.22020 0.94526 0.95923 0.96377 1.21631 1.02255 1.01279 0.93668 1.21644 0.95180 1.01293 1.00473 1.22351 0.82251 0.95555 1.00292 1.22499 0.90282 0.92972 1.05767 0.90268 0.89515 0.89130 0.77297 0.90178 0.91999 0.77404 0.93503 0.90949 0.93434 0.92741 0.92875 0.93196 0.91381 0.91715 0.90930 0.79778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 11.15 59.84 0.67 1.01 16 2 N -0.46 -4.71 3.13 -125.78 -0.39 -5.10 16 3 C 0.18 2.21 12.55 -89.91 -1.13 1.08 16 4 N -0.44 -7.45 8.77 -11.03 -0.10 -7.54 16 5 C -0.05 -0.87 6.82 -83.09 -0.57 -1.44 16 6 C 0.61 11.56 7.84 -12.56 -0.10 11.46 16 7 O -0.56 -11.45 17.14 5.26 0.09 -11.36 16 8 N -0.60 -11.07 3.31 -171.69 -0.57 -11.64 16 9 C 0.09 1.85 4.96 -3.07 -0.02 1.84 16 10 C 0.18 3.57 2.85 -66.10 -0.19 3.39 16 11 H 0.06 1.27 8.02 -51.92 -0.42 0.85 16 12 N -0.71 -17.47 5.08 -51.65 -0.26 -17.73 16 13 C -0.24 -6.50 9.98 -15.06 -0.15 -6.65 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 17 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.09 -1.49 0.87 -152.24 -0.13 -1.63 16 22 C -0.13 -2.31 7.94 37.16 0.30 -2.01 16 23 C -0.13 -1.95 8.68 37.16 0.32 -1.62 16 24 C 0.12 1.98 5.85 -2.41 -0.01 1.96 16 25 C 0.02 0.30 11.26 -16.64 -0.19 0.11 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.21 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.08 1.80 7.51 -51.93 -0.39 1.41 16 31 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 32 H 0.39 10.07 5.26 -40.82 -0.21 9.85 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.41 6.34 -51.93 -0.33 1.08 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 1.03 7.91 -51.93 -0.41 0.62 16 37 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 41 H 0.07 1.20 7.95 -51.93 -0.41 0.78 16 42 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -34.24 345.49 -7.95 -42.19 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.34 Total: 8.74 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.29 Total: 7.09 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.60 Total: -69.07 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.24 -7.95 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995683451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.222 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds