Wall clock time and date at job start Tue Mar 31 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35841 * 126.13708 * 2 1 4 4 N 1.30174 * 109.00545 * 179.97438 * 3 2 1 5 5 C 1.35759 * 108.86724 * 0.02562 * 4 3 2 6 6 C 1.47325 * 126.23959 * 179.97438 * 5 4 3 7 7 O 1.21621 * 120.00224 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99475 * 0.02562 * 6 5 4 9 9 C 1.47014 * 125.65128 * 0.02963 * 8 6 5 10 10 C 1.54322 * 107.27201 * 181.02074 * 9 8 6 11 11 H 1.09011 * 110.72253 * 263.83106 * 10 9 8 12 12 N 1.46500 * 110.72292 * 140.55680 * 10 9 8 13 13 C 1.36938 * 119.99919 * 86.45539 * 12 10 9 14 14 H 1.07995 * 119.99859 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99867 * 180.02562 * 13 12 10 16 16 N 1.31623 * 120.00001 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00059 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47404 * 59.99825 * 17 15 13 19 19 H 1.48500 * 109.47604 * 180.02562 * 17 15 13 20 20 H 1.48509 * 109.47170 * 300.00053 * 17 15 13 21 21 C 1.55159 * 102.94257 * 22.19159 * 10 9 8 22 22 C 1.53004 * 111.00108 * 82.57174 * 21 10 9 23 23 C 1.53003 * 111.00559 * 206.38718 * 21 10 9 24 24 C 1.47425 * 125.64463 * 179.72059 * 8 6 5 25 25 C 1.35383 * 126.13250 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47498 * 90.02665 * 1 2 3 27 27 H 1.09008 * 109.47552 * 210.02642 * 1 2 3 28 28 H 1.09002 * 109.47153 * 330.02516 * 1 2 3 29 29 H 1.08003 * 125.50153 * 359.96924 * 3 2 1 30 30 H 1.09000 * 109.88689 * 300.43586 * 9 8 6 31 31 H 1.09000 * 109.88184 * 61.45022 * 9 8 6 32 32 H 0.97001 * 120.00196 * 266.45533 * 12 10 9 33 33 H 0.96997 * 119.99537 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47003 * 60.00184 * 22 21 10 35 35 H 1.08997 * 109.46977 * 179.97438 * 22 21 10 36 36 H 1.08991 * 109.47199 * 300.00322 * 22 21 10 37 37 H 1.08998 * 109.47054 * 59.99775 * 23 21 10 38 38 H 1.08994 * 109.46724 * 180.02562 * 23 21 10 39 39 H 1.09004 * 109.46921 * 300.00309 * 23 21 10 40 40 H 1.09003 * 110.36598 * 274.74835 * 24 8 6 41 41 H 1.09002 * 110.36988 * 37.07026 * 24 8 6 42 42 H 1.08001 * 126.56392 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2660 1.0971 0.0000 4 7 3.5100 0.7136 0.0006 5 6 3.5511 -0.6434 0.0003 6 6 4.7652 -1.4779 0.0003 7 8 4.6697 -2.6904 -0.0004 8 7 5.9817 -0.8976 0.0009 9 6 6.2407 0.5495 0.0024 10 6 7.7718 0.7409 -0.0236 11 1 8.1586 0.8933 0.9842 12 7 8.1398 1.8588 -0.8960 13 6 8.1637 3.1350 -0.4003 14 1 7.9109 3.3175 0.6336 15 6 8.5119 4.1943 -1.2272 16 7 8.8185 3.9720 -2.4877 17 14 8.5438 5.9354 -0.5512 18 1 9.5203 6.0154 0.5646 19 1 8.9433 6.8772 -1.6277 20 1 7.1925 6.2980 -0.0533 21 6 8.2802 -0.6030 -0.6092 22 6 8.1965 -0.6019 -2.1370 23 6 9.7061 -0.9008 -0.1411 24 6 7.2729 -1.6091 0.0068 25 6 2.2632 -1.0934 -0.0005 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8898 0.5143 28 1 -0.3633 0.8902 0.5134 29 1 1.9258 2.1221 -0.0005 30 1 5.7950 1.0068 -0.8809 31 1 5.8238 0.9998 0.9032 32 1 8.3665 1.6949 -1.8248 33 1 9.0621 4.7122 -3.0653 34 1 8.8103 0.2067 -2.5339 35 1 8.5593 -1.5552 -2.5213 36 1 7.1610 -0.4563 -2.4440 37 1 9.7255 -0.9641 0.9468 38 1 10.0377 -1.8479 -0.5666 39 1 10.3709 -0.1023 -0.4705 40 1 7.5619 -1.8623 1.0269 41 1 7.2132 -2.5087 -0.6058 42 1 1.9420 -2.1246 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995683451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:19 Heat of formation + Delta-G solvation = 28.367076 kcal Electronic energy + Delta-G solvation = -24022.190029 eV Core-core repulsion = 20617.130997 eV Total energy + Delta-G solvation = -3405.059032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.11079 -41.08099 -39.10087 -35.82536 -35.16256 -34.30995 -32.61198 -30.84638 -29.11409 -28.57876 -28.25085 -27.05367 -25.77635 -23.98483 -22.48951 -22.08524 -20.40140 -19.99990 -19.09643 -18.27484 -17.43182 -17.23452 -16.66289 -16.43672 -16.11282 -15.69629 -15.37182 -15.05832 -14.89448 -14.72402 -14.41423 -14.21278 -13.86649 -13.59300 -13.45355 -13.42717 -13.31191 -12.95471 -12.79131 -12.77755 -12.50029 -12.12101 -12.06608 -11.85577 -11.48560 -11.35878 -11.19785 -11.05856 -10.76454 -10.69103 -9.80459 -9.42127 -8.97770 -7.88703 -5.17115 0.57012 1.47185 1.51029 1.53737 1.59526 1.75310 2.15890 2.53482 2.61685 3.34430 3.42558 3.60426 3.83181 3.86025 3.90669 4.00310 4.15417 4.23259 4.36784 4.45063 4.47357 4.48853 4.52434 4.67978 4.75535 4.83241 4.86768 5.02346 5.06210 5.07677 5.11496 5.22655 5.29926 5.35064 5.44848 5.46945 5.57022 5.60502 6.13977 6.32576 6.54539 6.83821 7.21661 7.40464 8.13269 8.39078 9.34538 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.005319 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.193653 B = 5262.811372 C = 6993.659226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.452 5.452 3 C 0.185 3.815 4 N -0.497 5.497 5 C -0.103 4.103 6 C 0.606 3.394 7 O -0.585 6.585 8 N -0.601 5.601 9 C 0.120 3.880 10 C 0.169 3.831 11 H 0.063 0.937 12 N -0.720 5.720 13 C -0.238 4.238 14 H 0.074 0.926 15 C -0.070 4.070 16 N -0.969 5.969 17 Si 0.970 3.030 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.280 1.280 21 C -0.078 4.078 22 C -0.123 4.123 23 C -0.122 4.122 24 C 0.120 3.880 25 C 0.045 3.955 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.243 0.757 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.380 0.620 33 H 0.250 0.750 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 -10.201 5.948 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.133 5.133 3 C -0.099 4.099 4 N -0.216 5.216 5 C -0.231 4.231 6 C 0.396 3.604 7 O -0.468 6.468 8 N -0.332 5.332 9 C -0.006 4.006 10 C 0.059 3.941 11 H 0.081 0.919 12 N -0.361 5.361 13 C -0.370 4.370 14 H 0.092 0.908 15 C -0.262 4.262 16 N -0.620 5.620 17 Si 0.799 3.201 18 H -0.204 1.204 19 H -0.224 1.224 20 H -0.206 1.206 21 C -0.080 4.080 22 C -0.181 4.181 23 C -0.180 4.180 24 C -0.002 4.002 25 C -0.097 4.097 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.259 0.741 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -15.053 -10.160 6.055 19.144 hybrid contribution -0.562 0.807 -0.322 1.035 sum -15.615 -9.353 5.733 19.083 Atomic orbital electron populations 1.22539 0.72564 1.07076 1.05492 1.45669 1.09963 1.05520 1.52104 1.25931 0.84535 0.95193 1.04271 1.70792 1.21680 1.10595 1.18520 1.20506 0.93508 0.91033 1.18083 1.16973 0.81815 0.85934 0.75673 1.90699 1.87040 1.14135 1.54877 1.48283 1.05269 1.08817 1.70807 1.22691 0.98578 0.78666 1.00659 1.21463 0.90818 0.87491 0.94342 0.91908 1.42603 1.80675 1.02068 1.10770 1.19572 1.37019 0.85061 0.95325 0.90791 1.25460 1.03098 1.01536 0.96096 1.69809 1.54707 1.31437 1.05998 0.85273 0.77914 0.80144 0.76785 1.20402 1.22376 1.20635 1.21978 0.96122 0.93990 0.95864 1.21545 1.00514 1.01848 0.94160 1.21605 0.92967 1.01876 1.01545 1.22441 0.81219 0.95222 1.01341 1.22789 0.89355 0.94445 1.03106 0.88836 0.87660 0.86756 0.74114 0.93259 0.93017 0.78430 0.94129 0.93190 0.90615 0.94826 0.91412 0.90513 0.93330 0.89981 0.90303 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 11.15 127.77 1.42 1.78 16 2 N -0.45 -8.06 3.13 -551.84 -1.72 -9.78 16 3 C 0.19 4.27 12.55 180.10 2.26 6.53 16 4 N -0.50 -16.83 8.77 -188.81 -1.66 -18.49 16 5 C -0.10 -3.48 6.82 40.51 0.28 -3.21 16 6 C 0.61 23.16 7.84 86.63 0.68 23.84 16 7 O -0.59 -23.69 17.14 -4.10 -0.07 -23.76 16 8 N -0.60 -22.61 3.31 -815.35 -2.70 -25.31 16 9 C 0.12 4.94 4.96 86.73 0.43 5.37 16 10 C 0.17 6.99 2.85 46.18 0.13 7.12 16 11 H 0.06 2.58 8.02 -2.38 -0.02 2.56 16 12 N -0.72 -36.38 5.08 -317.32 -1.61 -37.99 16 13 C -0.24 -13.18 9.98 84.03 0.84 -12.34 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 15 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 16 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 17 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 C -0.08 -2.66 0.87 -50.71 -0.04 -2.70 16 22 C -0.12 -4.39 7.94 71.98 0.57 -3.82 16 23 C -0.12 -3.53 8.68 71.98 0.62 -2.90 16 24 C 0.12 3.90 5.85 86.93 0.51 4.41 16 25 C 0.04 1.08 11.26 83.72 0.94 2.03 16 26 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.10 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.24 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.05 2.34 7.51 -2.39 -0.02 2.32 16 31 H 0.05 2.20 7.73 -2.39 -0.02 2.18 16 32 H 0.38 20.47 5.26 -92.71 -0.49 19.98 16 33 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 34 H 0.05 2.01 6.34 -2.39 -0.02 1.99 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.03 1.30 7.91 -2.39 -0.02 1.28 16 37 H 0.07 1.75 8.07 -2.39 -0.02 1.73 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.08 2.40 7.99 -2.39 -0.02 2.38 16 41 H 0.08 2.49 7.95 -2.39 -0.02 2.47 16 42 H 0.21 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -76.73 345.49 4.19 -72.54 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.53 Total: 30.88 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 9.11 Total: 22.59 kcal Atomic # 7 Polarization: -143.03 SS G_CDS: -7.41 Total: -150.44 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.07 Total: -23.76 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.73 4.19 -72.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995683451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.904 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds