Wall clock time and date at job start Tue Mar 31 2020 03:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38043 * 126.29487 * 2 1 4 4 C 1.47433 * 126.41376 * 359.97438 * 3 2 1 5 5 O 1.21608 * 119.99520 * 320.36251 * 4 3 2 6 6 N 1.34773 * 120.00098 * 140.35616 * 4 3 2 7 7 C 1.46930 * 120.60614 * 354.54736 * 6 4 3 8 8 C 1.53191 * 108.77052 * 233.53434 * 7 6 4 9 9 C 1.53041 * 109.33759 * 305.40744 * 8 7 6 10 10 C 1.53041 * 109.53591 * 61.35302 * 9 8 7 11 11 H 1.09000 * 109.49772 * 58.58086 * 10 9 8 12 12 N 1.46501 * 109.49953 * 178.64943 * 10 9 8 13 13 C 1.36936 * 119.99891 * 205.00106 * 12 10 9 14 14 H 1.07998 * 120.00198 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99725 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99912 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47119 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47124 * 119.99625 * 17 15 13 20 20 H 1.48504 * 109.47090 * 239.99533 * 17 15 13 21 21 C 1.46927 * 120.62869 * 174.51954 * 6 4 3 22 22 C 1.41290 * 107.17318 * 180.26727 * 3 2 1 23 23 N 1.30447 * 108.02277 * 359.58827 * 22 3 2 24 24 N 1.34269 * 126.29046 * 180.02562 * 2 1 3 25 25 C 1.46490 * 125.75461 * 359.97438 * 24 2 1 26 26 H 1.08993 * 109.47666 * 90.00259 * 1 2 3 27 27 H 1.09006 * 109.47013 * 210.00243 * 1 2 3 28 28 H 1.09003 * 109.47231 * 329.99542 * 1 2 3 29 29 H 1.09002 * 109.56330 * 113.75543 * 7 6 4 30 30 H 1.09007 * 109.61372 * 353.33331 * 7 6 4 31 31 H 1.09003 * 109.49510 * 185.44554 * 8 7 6 32 32 H 1.08995 * 109.50034 * 65.38331 * 8 7 6 33 33 H 1.09002 * 109.46030 * 181.37164 * 9 8 7 34 34 H 1.08996 * 109.46279 * 301.33155 * 9 8 7 35 35 H 0.96996 * 119.99824 * 24.99771 * 12 10 9 36 36 H 0.97006 * 119.99511 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.58550 * 6.65134 * 21 6 4 38 38 H 1.09000 * 109.58689 * 246.22586 * 21 6 4 39 39 H 1.07998 * 125.98601 * 179.73810 * 22 3 2 40 40 H 1.09002 * 109.47337 * 89.99499 * 25 24 2 41 41 H 1.08999 * 109.47377 * 209.99551 * 25 24 2 42 42 H 1.09000 * 109.47407 * 330.00269 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.9310 2.8595 -0.6728 6 7 2.5434 3.4311 0.7441 7 6 3.6218 3.0170 1.6521 8 6 3.3211 3.5577 3.0535 9 6 3.1087 5.0714 2.9779 10 6 1.9107 5.3757 2.0755 11 1 1.0225 4.8835 2.4717 12 7 1.6883 6.8230 2.0295 13 6 0.4432 7.3155 1.7427 14 1 -0.3748 6.6371 1.5501 15 6 0.2326 8.6868 1.6986 16 7 1.2295 9.5136 1.9328 17 14 -1.4661 9.3588 1.3081 18 1 -2.4058 8.2306 1.0864 19 1 -1.9445 10.1861 2.4447 20 1 -1.3982 10.1941 0.0821 21 6 2.1958 4.8563 0.6628 22 6 3.6590 0.6498 -0.0063 23 7 3.6340 -0.6544 -0.0009 24 7 2.3017 -1.0822 -0.0005 25 6 1.8501 -2.4758 -0.0006 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 4.5708 3.4217 1.3001 30 1 3.6757 1.9288 1.6840 31 1 4.1599 3.3406 3.7149 32 1 2.4199 3.0827 3.4411 33 1 2.9186 5.4618 3.9778 34 1 4.0015 5.5434 2.5678 35 1 2.4230 7.4323 2.2022 36 1 1.0822 10.4720 1.9023 37 1 1.3088 4.9811 0.0416 38 1 3.0282 5.4114 0.2304 39 1 4.5448 1.2676 -0.0119 40 1 1.7376 -2.8213 -1.0283 41 1 2.5849 -3.0959 0.5128 42 1 0.8916 -2.5472 0.5135 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998547716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:28 Heat of formation + Delta-G solvation = 55.190149 kcal Electronic energy + Delta-G solvation = -23765.333905 eV Core-core repulsion = 20361.438009 eV Total energy + Delta-G solvation = -3403.895896 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63037 -39.40443 -37.08001 -34.52900 -33.76585 -32.24729 -32.04077 -31.09083 -28.64693 -27.42873 -27.01676 -25.02677 -23.90617 -22.17915 -21.73735 -20.75994 -19.78111 -18.59020 -17.24824 -17.03964 -16.17967 -15.85785 -15.56434 -14.94792 -14.62981 -14.38661 -14.05137 -13.75679 -13.63353 -13.42894 -13.29517 -13.12269 -12.89103 -12.72112 -12.55309 -12.32514 -12.24735 -12.16773 -11.27913 -11.03822 -10.98521 -10.81495 -10.59891 -10.50222 -10.13280 -9.76575 -9.70850 -9.57336 -9.46876 -9.02627 -8.65346 -8.19928 -6.95191 -5.75201 -3.04560 1.47543 2.14520 2.18042 3.22302 3.46797 3.52580 3.53786 3.56053 4.22891 4.38743 4.61846 4.72962 4.74547 4.85535 5.00013 5.04901 5.07861 5.19176 5.32841 5.35504 5.41434 5.53525 5.62531 5.67015 5.74330 5.81491 5.87523 6.00820 6.11854 6.23552 6.26469 6.30196 6.42457 6.57255 6.66627 6.85312 6.90184 7.09800 7.40112 7.76202 7.81193 8.42974 8.56691 9.55036 10.09714 10.45034 11.47253 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024421 B = 0.003777 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.295666 B = 7411.263947 C = 8166.789788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.143 3.857 3 C -0.284 4.284 4 C 0.590 3.410 5 O -0.544 6.544 6 N -0.601 5.601 7 C 0.104 3.896 8 C -0.129 4.129 9 C -0.126 4.126 10 C 0.169 3.831 11 H 0.050 0.950 12 N -0.719 5.719 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.094 3.906 22 C 0.082 3.918 23 N -0.302 5.302 24 N -0.367 5.367 25 C 0.098 3.902 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.190 0.810 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -23.722 -0.605 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.012 3.988 3 C -0.299 4.299 4 C 0.377 3.623 5 O -0.422 6.422 6 N -0.334 5.334 7 C -0.020 4.020 8 C -0.168 4.168 9 C -0.164 4.164 10 C 0.058 3.942 11 H 0.068 0.932 12 N -0.360 5.360 13 C -0.371 4.371 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.581 5.581 17 Si 0.737 3.263 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.030 4.030 22 C -0.105 4.105 23 N -0.121 5.121 24 N -0.147 5.147 25 C -0.043 4.043 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.207 0.793 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.766 -24.702 -0.986 25.177 hybrid contribution -0.919 1.367 -0.192 1.658 sum 3.847 -23.335 -1.177 23.679 Atomic orbital electron populations 1.20550 0.86264 1.04068 1.04264 1.21424 0.94753 0.86264 0.96365 1.20080 0.92992 0.93831 1.22979 1.17297 0.82137 0.83594 0.79257 1.90768 1.27690 1.80605 1.43151 1.48073 1.35860 1.08217 1.41229 1.21895 0.90071 1.00122 0.89875 1.21870 1.01837 0.97046 0.96009 1.21825 0.99349 0.94319 1.00927 1.20489 0.95418 0.86718 0.91615 0.93181 1.42388 1.10167 0.99391 1.84008 1.19329 0.87535 0.90502 1.39689 0.90971 1.24742 0.97549 0.95975 1.02535 1.69676 1.30133 1.02068 1.56236 0.86124 0.83866 0.78805 0.77493 1.20430 1.21908 1.21825 1.22750 1.01596 0.77030 1.01627 1.24047 0.97215 0.91723 0.97473 1.77152 0.96044 1.13222 1.25704 1.48264 1.04033 1.06184 1.56255 1.21919 1.01216 0.77507 1.03699 0.89204 0.91094 0.88759 0.91590 0.89795 0.91162 0.91762 0.91532 0.92044 0.78102 0.93568 0.89084 0.92100 0.79286 0.90415 0.88970 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.57 36.00 0.34 -0.55 16 2 C 0.14 1.71 7.00 -81.60 -0.57 1.14 16 3 C -0.28 -3.94 5.21 -105.06 -0.55 -4.48 16 4 C 0.59 9.98 7.31 -12.52 -0.09 9.89 16 5 O -0.54 -11.16 15.82 5.27 0.08 -11.08 16 6 N -0.60 -9.61 2.97 -174.02 -0.52 -10.13 16 7 C 0.10 1.27 5.47 -3.71 -0.02 1.25 16 8 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 9 C -0.13 -2.01 5.36 -26.69 -0.14 -2.16 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.20 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 N -0.72 -18.00 5.13 -53.31 -0.27 -18.28 16 13 C -0.24 -6.73 9.93 -15.06 -0.15 -6.87 16 14 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 16 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 17 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 C 0.09 1.82 6.03 -3.71 -0.02 1.80 16 22 C 0.08 0.99 9.62 -16.98 -0.16 0.82 16 23 N -0.30 -3.68 12.50 30.86 0.39 -3.30 16 24 N -0.37 -3.87 3.98 -63.35 -0.25 -4.13 16 25 C 0.10 0.56 11.24 59.84 0.67 1.23 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.45 7.05 -51.93 -0.37 0.08 16 28 H 0.09 1.09 7.72 -51.93 -0.40 0.69 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.92 4.76 -51.92 -0.25 0.67 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 36 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.19 1.79 7.33 -52.49 -0.38 1.40 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.31 7.02 -51.93 -0.36 -0.05 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -34.75 341.73 -7.08 -41.83 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.22 Total: 6.63 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.15 Total: 3.02 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: 0.07 Total: -63.31 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.75 -7.08 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998547716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.020 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds