Wall clock time and date at job start Tue Mar 31 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38048 * 126.29320 * 2 1 4 4 C 1.47435 * 126.41114 * 359.97438 * 3 2 1 5 5 O 1.21607 * 119.99661 * 50.58152 * 4 3 2 6 6 N 1.34769 * 119.99848 * 230.57622 * 4 3 2 7 7 C 1.46923 * 120.63609 * 355.65890 * 6 4 3 8 8 C 1.53190 * 108.78318 * 126.40924 * 7 6 4 9 9 C 1.53045 * 109.31113 * 54.63091 * 8 7 6 10 10 C 1.53036 * 109.53945 * 298.64005 * 9 8 7 11 11 H 1.08997 * 109.49785 * 301.38042 * 10 9 8 12 12 N 1.46498 * 109.49407 * 181.31373 * 10 9 8 13 13 C 1.36940 * 119.99756 * 154.99906 * 12 10 9 14 14 H 1.07996 * 120.00273 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99958 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00034 * 179.72234 * 15 13 12 17 17 Si 1.86800 * 119.99993 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47392 * 89.99412 * 17 15 13 19 19 H 1.48505 * 109.46908 * 209.99521 * 17 15 13 20 20 H 1.48498 * 109.46892 * 329.99336 * 17 15 13 21 21 C 1.46932 * 120.62856 * 175.67490 * 6 4 3 22 22 C 1.41282 * 107.17337 * 180.24921 * 3 2 1 23 23 N 1.30448 * 108.02312 * 359.61161 * 22 3 2 24 24 N 1.34257 * 126.29449 * 180.02562 * 2 1 3 25 25 C 1.46506 * 125.75208 * 359.95658 * 24 2 1 26 26 H 1.08999 * 109.46841 * 90.00103 * 1 2 3 27 27 H 1.08998 * 109.47484 * 210.00302 * 1 2 3 28 28 H 1.09001 * 109.46999 * 330.00127 * 1 2 3 29 29 H 1.09004 * 109.58397 * 6.61494 * 7 6 4 30 30 H 1.09004 * 109.70188 * 246.27149 * 7 6 4 31 31 H 1.09000 * 109.49570 * 294.68629 * 8 7 6 32 32 H 1.08998 * 109.49866 * 174.58711 * 8 7 6 33 33 H 1.08997 * 109.45819 * 178.61489 * 9 8 7 34 34 H 1.09001 * 109.44179 * 58.65624 * 9 8 7 35 35 H 0.96997 * 120.00477 * 334.99795 * 12 10 9 36 36 H 0.96993 * 120.00324 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.58448 * 113.80216 * 21 6 4 38 38 H 1.08993 * 109.58718 * 353.37443 * 21 6 4 39 39 H 1.07999 * 125.99078 * 179.74059 * 22 3 2 40 40 H 1.08998 * 109.46899 * 90.00146 * 25 24 2 41 41 H 1.08995 * 109.47186 * 210.00079 * 25 24 2 42 42 H 1.09003 * 109.46942 * 329.99974 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 -0.0005 5 8 1.0662 2.9022 0.8127 6 7 2.3935 3.3838 -0.9022 7 6 3.4529 2.9621 -1.8286 8 6 3.0093 3.2756 -3.2609 9 6 2.6380 4.7568 -3.3630 10 6 1.4718 5.0584 -2.4191 11 1 0.6197 4.4315 -2.6817 12 7 1.0968 6.4694 -2.5406 13 6 -0.1745 6.8695 -2.2260 14 1 -0.9005 6.1450 -1.8878 15 6 -0.5297 8.2065 -2.3406 16 7 -1.7532 8.5902 -2.0434 17 14 0.7262 9.4598 -2.9247 18 1 0.6618 9.5727 -4.4040 19 1 0.4286 10.7804 -2.3140 20 1 2.0866 9.0227 -2.5204 21 6 1.8982 4.7651 -0.9771 22 6 3.6590 0.6499 -0.0059 23 7 3.6340 -0.6543 -0.0007 24 7 2.3017 -1.0821 -0.0005 25 6 1.8501 -2.4758 -0.0002 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 3.6235 1.8904 -1.7252 30 1 4.3732 3.5017 -1.6047 31 1 2.1428 2.6651 -3.5153 32 1 3.8244 3.0564 -3.9505 33 1 2.3455 4.9881 -4.3872 34 1 3.4977 5.3664 -3.0845 35 1 1.7489 7.1202 -2.8439 36 1 -2.0016 9.5243 -2.1239 37 1 2.6902 5.4537 -0.6830 38 1 1.0428 4.8832 -0.3120 39 1 4.5448 1.2677 -0.0113 40 1 1.7375 -2.8214 -1.0278 41 1 2.5850 -3.0958 0.5132 42 1 0.8917 -2.5471 0.5142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998547720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:32 Heat of formation + Delta-G solvation = 59.474673 kcal Electronic energy + Delta-G solvation = -23846.010380 eV Core-core repulsion = 20442.300275 eV Total energy + Delta-G solvation = -3403.710105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63349 -39.46976 -37.18949 -34.64195 -33.79459 -32.28728 -32.06171 -31.26934 -29.05018 -27.56797 -27.03401 -25.10183 -23.77025 -22.21963 -21.57723 -20.80063 -19.91988 -18.64570 -17.52392 -17.27652 -16.29308 -15.77188 -15.62451 -14.93035 -14.65600 -14.48666 -14.15327 -13.93407 -13.74078 -13.42047 -13.28916 -13.03452 -12.88341 -12.76746 -12.52844 -12.48881 -12.31702 -12.26503 -11.56240 -11.16964 -11.02520 -10.89847 -10.68426 -10.58554 -10.27857 -9.85980 -9.65387 -9.57005 -9.49227 -9.06523 -8.63691 -8.28193 -7.26779 -5.75360 -3.12420 1.49565 2.15562 2.20415 3.08922 3.38481 3.40766 3.44615 3.48103 4.23637 4.39555 4.59843 4.72664 4.75251 4.85510 4.91189 4.98107 5.06983 5.09899 5.26884 5.32947 5.40181 5.42821 5.49758 5.60436 5.69211 5.76637 5.85141 5.86787 5.98004 6.08329 6.13085 6.25244 6.30930 6.44430 6.67004 6.75112 6.78089 6.97767 7.40005 7.74878 8.00896 8.43066 8.52199 9.20877 9.92625 10.11352 11.42753 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.003826 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.974350 B = 7317.495497 C = 7847.108737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.141 3.859 3 C -0.282 4.282 4 C 0.592 3.408 5 O -0.540 6.540 6 N -0.600 5.600 7 C 0.103 3.897 8 C -0.128 4.128 9 C -0.129 4.129 10 C 0.173 3.827 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.247 4.247 14 H 0.092 0.908 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C 0.094 3.906 22 C 0.080 3.920 23 N -0.301 5.301 24 N -0.366 5.366 25 C 0.098 3.902 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.189 0.811 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.280 -21.747 0.490 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.010 3.990 3 C -0.297 4.297 4 C 0.379 3.621 5 O -0.417 6.417 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.168 4.168 10 C 0.063 3.937 11 H 0.077 0.923 12 N -0.385 5.385 13 C -0.376 4.376 14 H 0.109 0.891 15 C -0.189 4.189 16 N -0.579 5.579 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.030 4.030 22 C -0.106 4.106 23 N -0.121 5.121 24 N -0.147 5.147 25 C -0.043 4.043 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.195 0.805 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.206 0.794 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.237 -22.726 0.987 25.372 hybrid contribution 0.519 1.727 -0.422 1.852 sum 11.756 -20.999 0.565 24.073 Atomic orbital electron populations 1.20654 0.86325 1.05066 1.04022 1.21381 0.94714 0.86178 0.96702 1.20023 0.93104 0.93776 1.22809 1.17309 0.80683 0.83668 0.80451 1.90781 1.34317 1.78388 1.38258 1.48073 1.38358 1.12589 1.34325 1.21865 0.90149 1.00687 0.89338 1.21855 1.01516 0.97426 0.95903 1.21867 0.99036 0.95140 1.00747 1.20461 0.94983 0.86936 0.91335 0.92292 1.42738 1.11728 1.03065 1.80965 1.19103 0.87008 0.93745 1.37771 0.89059 1.24679 0.96155 0.96767 1.01336 1.69703 1.17429 1.16182 1.54585 0.86553 0.81454 0.81894 0.78638 1.21106 1.21744 1.20280 1.22677 1.00081 0.78966 1.01268 1.23963 0.97040 0.91751 0.97874 1.77139 0.96118 1.13162 1.25663 1.48253 1.03977 1.06195 1.56230 1.21924 1.01242 0.77475 1.03699 0.89562 0.90769 0.87909 0.89670 0.91561 0.91569 0.91108 0.91428 0.92152 0.80483 0.93029 0.92220 0.88667 0.79387 0.90358 0.89007 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.93 36.00 0.36 -0.65 16 2 C 0.14 1.69 7.01 -81.60 -0.57 1.11 16 3 C -0.28 -3.87 5.11 -105.07 -0.54 -4.41 16 4 C 0.59 9.89 7.32 -12.52 -0.09 9.80 16 5 O -0.54 -11.12 15.61 5.27 0.08 -11.04 16 6 N -0.60 -9.33 2.97 -174.03 -0.52 -9.85 16 7 C 0.10 1.20 5.91 -3.71 -0.02 1.18 16 8 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 9 C -0.13 -1.91 5.35 -26.69 -0.14 -2.06 16 10 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 11 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 12 N -0.74 -17.38 4.93 -53.31 -0.26 -17.64 16 13 C -0.25 -6.96 10.41 -15.06 -0.16 -7.12 16 14 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 16 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 17 Si 0.88 22.02 27.74 -169.99 -4.71 17.30 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 21 C 0.09 1.76 6.01 -3.70 -0.02 1.74 16 22 C 0.08 0.95 9.66 -16.98 -0.16 0.78 16 23 N -0.30 -3.64 12.50 30.86 0.39 -3.25 16 24 N -0.37 -3.86 3.98 -63.34 -0.25 -4.11 16 25 C 0.10 0.56 11.24 59.85 0.67 1.23 16 26 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.50 7.05 -51.93 -0.37 0.14 16 28 H 0.10 1.27 7.14 -51.93 -0.37 0.90 16 29 H 0.09 0.89 4.57 -51.93 -0.24 0.65 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.36 8.25 5.66 -40.82 -0.23 8.01 16 36 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 2.11 7.03 -51.93 -0.37 1.75 16 39 H 0.19 1.70 7.66 -52.49 -0.40 1.30 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.33 7.02 -51.93 -0.36 -0.03 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -35.73 338.72 -6.68 -42.41 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.15 Total: 6.57 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.13 Total: 3.16 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.13 Total: -63.51 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.73 -6.68 -42.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998547720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.887 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds