Wall clock time and date at job start Tue Mar 31 2020 04:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35031 * 126.39052 * 2 1 4 4 H 0.97004 * 124.87864 * 359.94963 * 3 2 1 5 5 N 1.28462 * 110.23146 * 179.72975 * 3 2 1 6 6 C 1.31803 * 110.07591 * 0.42058 * 5 3 2 7 7 C 1.47707 * 126.51999 * 179.85572 * 6 5 3 8 8 O 1.21574 * 119.99978 * 173.30328 * 7 6 5 9 9 N 1.34778 * 120.00395 * 353.30531 * 7 6 5 10 10 C 1.46930 * 120.63515 * 173.02888 * 9 7 6 11 11 C 1.53193 * 108.77324 * 126.41325 * 10 9 7 12 12 C 1.53037 * 109.31496 * 54.63650 * 11 10 9 13 13 C 1.53042 * 109.53935 * 298.63329 * 12 11 10 14 14 H 1.09003 * 109.49412 * 301.38188 * 13 12 11 15 15 N 1.46497 * 109.49954 * 181.31659 * 13 12 11 16 16 C 1.36938 * 119.99679 * 154.99790 * 15 13 12 17 17 H 1.07997 * 120.00465 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99604 * 180.02562 * 16 15 13 19 19 N 1.31616 * 120.00287 * 359.72120 * 18 16 15 20 20 Si 1.86800 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47027 * 89.99878 * 20 18 16 22 22 H 1.48497 * 109.47165 * 209.99823 * 20 18 16 23 23 H 1.48504 * 109.47097 * 330.00004 * 20 18 16 24 24 C 1.46934 * 120.62520 * 353.05132 * 9 7 6 25 25 C 1.35366 * 126.38383 * 179.97438 * 2 1 3 26 26 C 1.50703 * 127.24956 * 0.03994 * 25 2 1 27 27 H 1.09002 * 109.46909 * 270.02286 * 1 2 3 28 28 H 1.08997 * 109.46818 * 30.01886 * 1 2 3 29 29 H 1.08994 * 109.47125 * 150.01944 * 1 2 3 30 30 H 1.08996 * 109.58433 * 6.62377 * 10 9 7 31 31 H 1.08999 * 109.58334 * 246.19790 * 10 9 7 32 32 H 1.08997 * 109.49603 * 294.67865 * 11 10 9 33 33 H 1.09005 * 109.49290 * 174.58633 * 11 10 9 34 34 H 1.08993 * 109.46156 * 178.61361 * 12 11 10 35 35 H 1.09005 * 109.44826 * 58.64250 * 12 11 10 36 36 H 0.96995 * 119.99809 * 334.99648 * 15 13 12 37 37 H 0.96998 * 120.00655 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.58360 * 113.80033 * 24 9 7 39 39 H 1.08993 * 109.58882 * 353.37152 * 24 9 7 40 40 H 1.08998 * 109.46979 * 269.97828 * 26 25 2 41 41 H 1.09003 * 109.47256 * 29.97337 * 26 25 2 42 42 H 1.08993 * 109.47298 * 149.97666 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9966 2.0057 -0.0007 5 7 3.5420 0.7295 0.0057 6 6 3.6321 -0.5855 0.0006 7 6 4.8764 -1.3813 0.0015 8 8 4.8247 -2.5902 0.1192 9 7 6.0692 -0.7673 -0.1281 10 6 7.3204 -1.5227 0.0230 11 6 8.1881 -1.2927 -1.2184 12 6 8.3829 0.2107 -1.4284 13 6 7.0239 0.8756 -1.6590 14 1 6.5424 0.4272 -2.5280 15 7 7.2143 2.3095 -1.8911 16 6 6.2831 3.0174 -2.6032 17 1 5.4087 2.5185 -2.9942 18 6 6.4638 4.3760 -2.8236 19 7 7.5272 4.9849 -2.3433 20 14 5.1933 5.3417 -3.7944 21 1 4.1669 5.8815 -2.8668 22 1 5.8598 6.4641 -4.5025 23 1 4.5432 4.4474 -4.7858 24 6 6.1430 0.6703 -0.4226 25 6 2.3100 -1.0898 0.0005 26 6 1.8853 -2.5357 0.0003 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 7.0964 -2.5849 0.1206 31 1 7.8516 -1.1761 0.9094 32 1 7.6953 -1.7211 -2.0911 33 1 9.1583 -1.7691 -1.0774 34 1 9.0203 0.3764 -2.2968 35 1 8.8532 0.6425 -0.5449 36 1 7.9998 2.7575 -1.5402 37 1 7.6536 5.9342 -2.4975 38 1 6.5782 1.1955 0.4275 39 1 5.1423 1.0549 -0.6191 40 1 1.7828 -2.8844 1.0279 41 1 0.9291 -2.6335 -0.5137 42 1 2.6369 -3.1351 -0.5134 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998766693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:25 Heat of formation + Delta-G solvation = 29.506457 kcal Electronic energy + Delta-G solvation = -24176.293529 eV Core-core repulsion = 20771.283905 eV Total energy + Delta-G solvation = -3405.009624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.75394 -40.91935 -38.66929 -36.04874 -34.57417 -34.07714 -33.44348 -32.61788 -29.94665 -29.25644 -27.16357 -26.70710 -25.90264 -24.52268 -22.93828 -21.59031 -20.97802 -19.92631 -19.11200 -18.69152 -17.61802 -17.10816 -16.97351 -16.62029 -15.93943 -15.54468 -15.44513 -15.24281 -14.84151 -14.66954 -14.13959 -14.01685 -13.90084 -13.86063 -13.55711 -13.53543 -13.19284 -12.96991 -12.89853 -12.79191 -12.51719 -12.23540 -12.04197 -11.98575 -11.73011 -11.54225 -11.27949 -11.12987 -10.73984 -10.33351 -9.74667 -9.59007 -8.97634 -7.94787 -5.23830 0.50487 1.11151 1.44053 1.46076 1.54593 1.81425 2.16393 2.32927 2.54807 3.32022 3.38730 3.69842 3.82084 4.00434 4.02408 4.05343 4.23197 4.27071 4.34579 4.41223 4.42321 4.63569 4.76404 4.76815 4.87883 4.92700 4.93390 4.98753 5.03320 5.07801 5.09343 5.14739 5.24945 5.38507 5.44008 5.47806 5.57751 5.68914 6.18124 6.25240 6.35335 6.86625 7.14628 7.33277 8.05337 8.32138 9.28360 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.006186 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.186053 B = 4525.013194 C = 6550.361705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.025 3.975 3 N -0.374 5.374 4 H 0.456 0.544 5 N -0.271 5.271 6 C -0.041 4.041 7 C 0.595 3.405 8 O -0.563 6.563 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.117 4.117 12 C -0.120 4.120 13 C 0.167 3.833 14 H 0.029 0.971 15 N -0.727 5.727 16 C -0.235 4.235 17 H 0.067 0.933 18 C -0.069 4.069 19 N -0.967 5.967 20 Si 0.968 3.032 21 H -0.284 1.284 22 H -0.295 1.295 23 H -0.274 1.274 24 C 0.082 3.918 25 C -0.173 4.173 26 C -0.067 4.067 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.376 0.624 37 H 0.251 0.749 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -12.537 6.294 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 N -0.090 5.090 4 H 0.303 0.697 5 N -0.107 5.107 6 C -0.200 4.200 7 C 0.382 3.618 8 O -0.442 6.442 9 N -0.327 5.327 10 C -0.014 4.014 11 C -0.155 4.155 12 C -0.158 4.158 13 C 0.057 3.943 14 H 0.047 0.953 15 N -0.367 5.367 16 C -0.367 4.367 17 H 0.084 0.916 18 C -0.261 4.261 19 N -0.617 5.617 20 Si 0.797 3.203 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.200 1.200 24 C -0.044 4.044 25 C -0.183 4.183 26 C -0.125 4.125 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.451 -12.201 6.249 17.862 hybrid contribution -0.424 1.119 -0.418 1.268 sum -11.875 -11.082 5.831 17.257 Atomic orbital electron populations 1.20542 0.83065 1.05447 1.04808 1.21849 0.96994 0.85652 1.05634 1.43583 1.02586 1.10676 1.52110 0.69680 1.73572 1.02532 1.14638 1.19988 1.21949 0.95462 0.90207 1.12392 1.17278 0.82278 0.86083 0.76127 1.90674 1.86857 1.13631 1.53005 1.48143 1.05631 1.10622 1.68287 1.21823 0.83337 0.97445 0.98794 1.21814 1.01030 0.95206 0.97468 1.21760 0.96352 0.95728 1.01977 1.20626 0.95033 0.84339 0.94272 0.95296 1.42478 1.25705 1.04311 1.64210 1.19468 1.01030 0.91246 1.24943 0.91553 1.25464 0.99949 0.97686 1.03037 1.69801 1.30044 1.09881 1.51976 0.85232 0.78530 0.78212 0.78355 1.21044 1.22168 1.19959 1.23149 1.04917 0.78324 0.98020 1.20434 0.89916 0.98205 1.09744 1.20110 1.01624 0.88218 1.02508 0.88559 0.89302 0.88241 0.88878 0.90082 0.92369 0.87516 0.91949 0.91544 0.79136 0.93976 0.93152 0.86659 0.91087 0.89239 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.26 71.24 0.73 -0.15 16 2 C 0.03 0.55 7.23 41.40 0.30 0.85 16 3 N -0.37 -9.51 6.83 -47.93 -0.33 -9.83 16 4 H 0.46 8.66 8.96 -219.99 -1.97 6.69 16 5 N -0.27 -9.27 8.71 -48.18 -0.42 -9.69 16 6 C -0.04 -1.43 6.83 42.46 0.29 -1.14 16 7 C 0.59 22.06 7.69 86.75 0.67 22.73 16 8 O -0.56 -21.76 14.63 -3.95 -0.06 -21.82 16 9 N -0.60 -20.95 2.97 -822.44 -2.44 -23.39 16 10 C 0.11 3.08 6.44 86.36 0.56 3.63 16 11 C -0.12 -3.13 6.08 30.67 0.19 -2.95 16 12 C -0.12 -4.00 5.35 30.62 0.16 -3.84 16 13 C 0.17 6.95 2.92 45.07 0.13 7.08 16 14 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 15 N -0.73 -36.89 5.12 -322.56 -1.65 -38.55 16 16 C -0.24 -13.05 9.93 84.03 0.83 -12.22 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 19 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 20 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 C 0.08 3.21 5.70 86.36 0.49 3.71 16 25 C -0.17 -4.82 6.24 -19.72 -0.12 -4.94 16 26 C -0.07 -1.53 9.68 71.24 0.69 -0.84 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.86 7.31 -2.39 -0.02 0.84 16 30 H 0.09 2.62 7.00 -2.39 -0.02 2.60 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.38 20.25 7.80 -92.71 -0.72 19.53 16 37 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.12 4.90 4.17 -25.82 -0.11 4.79 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.43 7.31 -2.39 -0.02 1.42 16 42 H 0.06 1.55 6.86 -2.39 -0.02 1.53 16 Total: -1.00 -72.28 338.96 1.06 -71.22 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: -1.74 Total: 34.13 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.39 Total: 8.47 kcal Atomic # 7 Polarization: -135.02 SS G_CDS: -4.56 Total: -139.58 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.82 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.28 1.06 -71.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998766693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.730 kcal (2) G-P(sol) polarization free energy of solvation -72.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds