Wall clock time and date at job start Tue Mar 31 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48504 * 109.47065 * 269.99821 * 3 2 1 5 5 H 1.48493 * 109.47197 * 29.99570 * 3 2 1 6 6 H 1.48498 * 109.47185 * 149.99831 * 3 2 1 7 7 C 1.38819 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00090 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99997 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52577 * 324.92276 * 10 9 7 12 12 C 1.53045 * 109.49562 * 204.83834 * 10 9 7 13 13 C 1.53038 * 109.53658 * 178.68520 * 12 10 9 14 14 C 1.52757 * 109.38243 * 61.24126 * 13 12 10 15 15 N 1.46924 * 109.01027 * 305.58599 * 14 13 12 16 16 C 1.34775 * 120.63139 * 233.58353 * 15 14 13 17 17 O 1.21285 * 120.00077 * 179.72255 * 16 15 14 18 18 C 1.50696 * 120.00406 * 359.71864 * 16 15 14 19 19 C 1.52999 * 109.47624 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47246 * 180.02562 * 19 18 16 21 21 C 1.34666 * 126.59589 * 275.02842 * 20 19 18 22 22 N 1.34121 * 108.02399 * 179.97438 * 21 20 19 23 23 C 1.30504 * 109.25569 * 359.97438 * 22 21 20 24 24 N 1.35039 * 108.70033 * 0.02562 * 23 22 21 25 25 H 0.97003 * 126.39946 * 180.02562 * 24 23 22 26 26 C 1.46923 * 118.73820 * 53.31094 * 15 14 13 27 27 H 0.97005 * 120.00091 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99550 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46096 * 298.70537 * 12 10 9 30 30 H 1.09005 * 109.45709 * 58.68121 * 12 10 9 31 31 H 1.08998 * 109.49989 * 181.31921 * 13 12 10 32 32 H 1.09001 * 109.49841 * 301.41444 * 13 12 10 33 33 H 1.09003 * 109.50908 * 185.70356 * 14 13 12 34 34 H 1.09001 * 109.43330 * 65.42635 * 14 13 12 35 35 H 1.09006 * 109.46614 * 60.00166 * 18 16 15 36 36 H 1.09006 * 109.47344 * 300.00508 * 18 16 15 37 37 H 1.09001 * 109.46730 * 59.99786 * 19 18 16 38 38 H 1.09002 * 109.46941 * 300.00564 * 19 18 16 39 39 H 1.08001 * 125.98583 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.64666 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.58895 * 66.42826 * 26 15 14 42 42 H 1.08997 * 109.59290 * 186.71422 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1119 -2.4711 0.0011 11 1 3.5662 -3.2063 0.5925 12 6 5.5014 -2.2583 0.6064 13 6 6.2552 -3.5897 0.6381 14 6 6.4233 -4.1113 -0.7878 15 7 5.1041 -4.1796 -1.4310 16 6 4.6759 -5.3239 -1.9998 17 8 3.5828 -5.3689 -2.5233 18 6 5.5554 -6.5476 -1.9857 19 6 4.8376 -7.6999 -2.6912 20 6 5.7169 -8.9236 -2.6764 21 6 6.6882 -9.2250 -3.5591 22 7 7.2317 -10.3957 -3.1945 23 6 6.6344 -10.8311 -2.1190 24 7 5.6823 -9.9422 -1.7626 25 1 5.0857 -10.0121 -1.0009 26 6 4.2580 -2.9784 -1.4370 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3623 -0.0004 29 1 6.0556 -1.5416 0.0004 30 1 5.4003 -1.8741 1.6215 31 1 7.2357 -3.4420 1.0907 32 1 5.6893 -4.3144 1.2236 33 1 6.8690 -5.1057 -0.7615 34 1 7.0683 -3.4343 -1.3479 35 1 5.7686 -6.8297 -0.9546 36 1 6.4896 -6.3296 -2.5033 37 1 4.6239 -7.4179 -3.7222 38 1 3.9036 -7.9176 -2.1731 39 1 6.9792 -8.6281 -4.4109 40 1 6.8636 -11.7500 -1.5999 41 1 4.7229 -2.2071 -2.0510 42 1 3.2763 -3.2249 -1.8412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999317119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:53 Heat of formation + Delta-G solvation = 29.089315 kcal Electronic energy + Delta-G solvation = -23079.495401 eV Core-core repulsion = 19674.467688 eV Total energy + Delta-G solvation = -3405.027713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28894 -40.05019 -37.54369 -34.68139 -34.10863 -32.58427 -32.34099 -31.37561 -29.52225 -28.46019 -25.72224 -24.23131 -23.50521 -21.79938 -21.77715 -21.02738 -20.29317 -18.78318 -18.21449 -17.59051 -16.88013 -15.84904 -15.79182 -15.10634 -14.81537 -14.64524 -14.32983 -14.26161 -13.91759 -13.64307 -13.52365 -13.22002 -12.93662 -12.63767 -12.59078 -12.42007 -12.31246 -11.62277 -11.43459 -11.24305 -10.96445 -10.77537 -10.68544 -10.31724 -10.28236 -10.23052 -9.94297 -9.68709 -9.60113 -9.14117 -8.61841 -8.42824 -7.32812 -5.80049 -3.17644 1.75231 2.74993 2.82960 2.90220 3.17079 3.34270 3.36840 3.42792 4.30822 4.49763 4.55190 4.69547 4.74025 4.79413 4.91417 4.96620 5.11531 5.15062 5.25905 5.32105 5.36302 5.40922 5.49397 5.50946 5.66534 5.75771 5.84134 5.86230 5.98062 6.02811 6.05576 6.18858 6.34733 6.47654 6.61552 6.69202 6.86514 7.08227 7.58710 7.79078 7.95441 8.32408 8.38957 9.15611 9.87317 10.05694 11.37945 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.003002 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.588185 B = 9326.093160 C = 9811.138219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.743 5.743 10 C 0.174 3.826 11 H 0.058 0.942 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.107 3.893 15 N -0.608 5.608 16 C 0.509 3.491 17 O -0.539 6.539 18 C -0.133 4.133 19 C -0.031 4.031 20 C -0.017 4.017 21 C -0.025 4.025 22 N -0.495 5.495 23 C 0.179 3.821 24 N -0.567 5.567 25 H 0.420 0.580 26 C 0.092 3.908 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.169 0.831 40 H 0.207 0.793 41 H 0.059 0.941 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.395 -17.036 -0.689 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.341 5.341 16 C 0.296 3.704 17 O -0.416 6.416 18 C -0.173 4.173 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.173 4.173 22 N -0.214 5.214 23 C -0.105 4.105 24 N -0.171 5.171 25 H 0.258 0.742 26 C -0.033 4.033 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.186 0.814 40 H 0.223 0.777 41 H 0.078 0.922 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.206 -17.491 -1.413 24.575 hybrid contribution -0.286 1.628 0.882 1.873 sum 16.920 -15.863 -0.531 23.199 Atomic orbital electron populations 1.69706 1.05134 1.25893 1.57040 1.24690 0.95233 0.97232 1.01759 0.86551 0.79177 0.84972 0.77812 1.21012 1.21691 1.20312 1.19089 0.80376 0.94841 1.43534 0.89102 1.42724 1.04143 1.01725 1.89900 1.20450 0.90881 0.89469 0.92919 0.92395 1.21866 0.96730 0.96421 1.01803 1.21801 1.00808 0.98178 0.96117 1.21651 0.84521 1.01720 0.93782 1.48259 1.18007 1.11873 1.56008 1.20553 0.87235 0.84232 0.78352 1.90735 1.21821 1.84031 1.45027 1.21679 0.99723 0.93181 1.02734 1.19790 0.95872 0.87824 1.03467 1.21369 1.03612 0.93727 0.94547 1.22135 0.97481 0.95827 1.01869 1.70282 1.27458 1.11597 1.12095 1.24963 0.91105 0.97692 0.96755 1.43347 1.30676 1.18451 1.24588 0.74250 1.22682 0.95733 0.84399 1.00442 0.92975 0.80456 0.92110 0.91355 0.90885 0.91510 0.90179 0.91399 0.89293 0.88579 0.88474 0.90211 0.81364 0.77696 0.92218 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 7 C -0.25 -6.97 10.41 -15.06 -0.16 -7.13 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.74 -17.12 4.93 -53.31 -0.26 -17.38 16 10 C 0.17 3.22 2.92 -67.81 -0.20 3.02 16 11 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 12 C -0.13 -1.83 5.35 -26.69 -0.14 -1.97 16 13 C -0.13 -1.36 6.06 -26.84 -0.16 -1.52 16 14 C 0.11 1.06 6.31 -3.94 -0.02 1.03 16 15 N -0.61 -8.45 2.98 -173.04 -0.52 -8.97 16 16 C 0.51 7.19 7.70 -10.99 -0.08 7.11 16 17 O -0.54 -10.04 15.39 5.55 0.09 -9.95 16 18 C -0.13 -1.23 4.03 -27.89 -0.11 -1.34 16 19 C -0.03 -0.28 5.06 -27.89 -0.14 -0.43 16 20 C -0.02 -0.15 6.49 -81.60 -0.53 -0.68 16 21 C -0.03 -0.26 11.79 -17.82 -0.21 -0.47 16 22 N -0.50 -5.48 11.25 -14.67 -0.17 -5.64 16 23 C 0.18 1.38 13.04 -90.37 -1.18 0.20 16 24 N -0.57 -3.95 6.15 -10.30 -0.06 -4.02 16 25 H 0.42 1.75 8.96 -40.82 -0.37 1.38 16 26 C 0.09 1.63 6.02 -3.71 -0.02 1.61 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.59 5.94 -51.93 -0.31 0.28 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 36 H 0.10 0.74 7.95 -51.93 -0.41 0.33 16 37 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 39 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.21 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.10 2.06 7.00 -51.93 -0.36 1.69 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -35.98 342.65 -9.07 -45.05 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.31 Total: 7.58 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.06 Total: -0.45 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.23 Total: -64.49 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.98 -9.07 -45.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999317119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.142 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds