Wall clock time and date at job start Tue Mar 31 2020 03:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48504 * 109.47065 * 269.99821 * 3 2 1 5 5 H 1.48493 * 109.47197 * 29.99570 * 3 2 1 6 6 H 1.48498 * 109.47185 * 149.99831 * 3 2 1 7 7 C 1.38819 * 119.99625 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00090 * 179.97438 * 7 2 1 10 10 C 1.46497 * 119.99997 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.52577 * 324.92276 * 10 9 7 12 12 C 1.53045 * 109.49562 * 204.83834 * 10 9 7 13 13 C 1.53038 * 109.53658 * 178.68520 * 12 10 9 14 14 C 1.52757 * 109.38243 * 61.24126 * 13 12 10 15 15 N 1.46924 * 109.01027 * 305.58599 * 14 13 12 16 16 C 1.34775 * 120.63139 * 233.58353 * 15 14 13 17 17 O 1.21285 * 120.00077 * 179.72255 * 16 15 14 18 18 C 1.50696 * 120.00406 * 359.71864 * 16 15 14 19 19 C 1.52999 * 109.47624 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47246 * 180.02562 * 19 18 16 21 21 C 1.34666 * 126.59589 * 275.02842 * 20 19 18 22 22 N 1.34121 * 108.02399 * 179.97438 * 21 20 19 23 23 C 1.30504 * 109.25569 * 359.97438 * 22 21 20 24 24 N 1.35039 * 108.70033 * 0.02562 * 23 22 21 25 25 H 0.97003 * 126.39946 * 180.02562 * 24 23 22 26 26 C 1.46923 * 118.73820 * 53.31094 * 15 14 13 27 27 H 0.97005 * 120.00091 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99550 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.46096 * 298.70537 * 12 10 9 30 30 H 1.09005 * 109.45709 * 58.68121 * 12 10 9 31 31 H 1.08998 * 109.49989 * 181.31921 * 13 12 10 32 32 H 1.09001 * 109.49841 * 301.41444 * 13 12 10 33 33 H 1.09003 * 109.50908 * 185.70356 * 14 13 12 34 34 H 1.09001 * 109.43330 * 65.42635 * 14 13 12 35 35 H 1.09006 * 109.46614 * 60.00166 * 18 16 15 36 36 H 1.09006 * 109.47344 * 300.00508 * 18 16 15 37 37 H 1.09001 * 109.46730 * 59.99786 * 19 18 16 38 38 H 1.09002 * 109.46941 * 300.00564 * 19 18 16 39 39 H 1.08001 * 125.98583 * 0.02562 * 21 20 19 40 40 H 1.08002 * 125.64666 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.58895 * 66.42826 * 26 15 14 42 42 H 1.08997 * 109.59290 * 186.71422 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1119 -2.4711 0.0011 11 1 3.5662 -3.2063 0.5925 12 6 5.5014 -2.2583 0.6064 13 6 6.2552 -3.5897 0.6381 14 6 6.4233 -4.1113 -0.7878 15 7 5.1041 -4.1796 -1.4310 16 6 4.6759 -5.3239 -1.9998 17 8 3.5828 -5.3689 -2.5233 18 6 5.5554 -6.5476 -1.9857 19 6 4.8376 -7.6999 -2.6912 20 6 5.7169 -8.9236 -2.6764 21 6 6.6882 -9.2250 -3.5591 22 7 7.2317 -10.3957 -3.1945 23 6 6.6344 -10.8311 -2.1190 24 7 5.6823 -9.9422 -1.7626 25 1 5.0857 -10.0121 -1.0009 26 6 4.2580 -2.9784 -1.4370 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3623 -0.0004 29 1 6.0556 -1.5416 0.0004 30 1 5.4003 -1.8741 1.6215 31 1 7.2357 -3.4420 1.0907 32 1 5.6893 -4.3144 1.2236 33 1 6.8690 -5.1057 -0.7615 34 1 7.0683 -3.4343 -1.3479 35 1 5.7686 -6.8297 -0.9546 36 1 6.4896 -6.3296 -2.5033 37 1 4.6239 -7.4179 -3.7222 38 1 3.9036 -7.9176 -2.1731 39 1 6.9792 -8.6281 -4.4109 40 1 6.8636 -11.7500 -1.5999 41 1 4.7229 -2.2071 -2.0510 42 1 3.2763 -3.2249 -1.8412 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999317119.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:53 Heat of formation + Delta-G solvation = 3.497429 kcal Electronic energy + Delta-G solvation = -23080.605148 eV Core-core repulsion = 19674.467688 eV Total energy + Delta-G solvation = -3406.137461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92653 -41.20609 -38.83428 -36.32345 -34.97633 -33.96759 -33.19867 -32.91753 -30.82617 -29.53488 -26.77321 -25.70448 -24.74659 -23.11444 -22.42439 -21.90221 -21.50830 -19.98141 -19.50291 -18.91341 -17.89927 -16.97274 -16.83085 -16.58847 -15.95117 -15.77175 -15.53205 -15.28221 -15.07181 -14.81970 -14.51942 -14.34601 -14.19591 -13.88865 -13.72963 -13.67386 -13.37512 -13.00201 -12.95651 -12.57488 -12.18483 -12.09275 -11.93429 -11.85554 -11.75883 -11.37942 -11.15196 -10.95472 -10.91606 -10.79233 -9.81419 -9.30074 -9.24992 -8.06025 -5.42090 1.11568 1.35539 1.41006 1.48174 1.64808 2.01247 2.24796 2.34373 2.45941 3.24806 3.47153 3.53708 3.88889 3.96148 4.00209 4.03343 4.06923 4.13137 4.25992 4.32948 4.37047 4.51400 4.56026 4.65884 4.69294 4.75166 4.82066 4.87589 4.93676 5.03593 5.09579 5.14216 5.36411 5.37152 5.44653 5.51965 5.73356 5.81231 6.17883 6.49799 6.59400 7.03112 7.16399 7.21685 7.76503 7.97932 9.15782 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.003002 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.588185 B = 9326.093160 C = 9811.138219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.243 1.243 7 C -0.237 4.237 8 H 0.044 0.956 9 N -0.745 5.745 10 C 0.170 3.830 11 H 0.030 0.970 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.100 3.900 15 N -0.607 5.607 16 C 0.501 3.499 17 O -0.596 6.596 18 C -0.116 4.116 19 C -0.023 4.023 20 C -0.018 4.018 21 C -0.043 4.043 22 N -0.539 5.539 23 C 0.190 3.810 24 N -0.559 5.559 25 H 0.433 0.567 26 C 0.104 3.896 27 H 0.259 0.741 28 H 0.370 0.630 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.173 0.827 40 H 0.243 0.757 41 H 0.065 0.935 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.702 -17.502 0.393 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.167 1.167 7 C -0.368 4.368 8 H 0.063 0.937 9 N -0.388 5.388 10 C 0.061 3.939 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.162 4.162 14 C -0.021 4.021 15 N -0.340 5.340 16 C 0.291 3.709 17 O -0.477 6.477 18 C -0.156 4.156 19 C -0.063 4.063 20 C -0.134 4.134 21 C -0.190 4.190 22 N -0.258 5.258 23 C -0.094 4.094 24 N -0.163 5.163 25 H 0.274 0.726 26 C -0.022 4.022 27 H 0.068 0.932 28 H 0.204 0.796 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.190 0.810 40 H 0.259 0.741 41 H 0.083 0.917 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.598 -17.996 -0.300 28.114 hybrid contribution -1.669 1.610 0.545 2.382 sum 19.929 -16.386 0.245 25.802 Atomic orbital electron populations 1.69915 1.07443 1.26888 1.59278 1.25626 0.96200 1.01703 1.02174 0.85301 0.78822 0.78802 0.78164 1.20449 1.22197 1.16741 1.18953 0.82758 0.93112 1.41966 0.93743 1.42671 1.02334 1.03830 1.90005 1.20642 0.93103 0.86937 0.93255 0.95225 1.21806 0.93682 0.99301 1.01274 1.21813 1.02081 0.95590 0.96677 1.22050 0.82263 1.04546 0.93195 1.48339 1.19064 1.10429 1.56174 1.21511 0.87028 0.85373 0.77010 1.90717 1.24608 1.84968 1.47441 1.21658 0.99159 0.90158 1.04608 1.19626 0.95649 0.88356 1.02620 1.21128 1.03265 0.93962 0.95053 1.22337 0.98092 0.96126 1.02466 1.70275 1.29195 1.12388 1.13957 1.25684 0.89873 0.98182 0.95690 1.43333 1.30661 1.17695 1.24619 0.72608 1.22130 0.94301 0.86364 0.99403 0.93238 0.79597 0.90636 0.91544 0.86888 0.91961 0.86432 0.89503 0.86658 0.85936 0.89834 0.91285 0.80994 0.74106 0.91685 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.75 13.97 21.65 0.30 -64.45 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 45.36 27.74 68.60 1.90 47.26 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.24 -10.00 6.52 99.48 0.65 -9.36 16 7 C -0.24 -13.90 10.41 84.04 0.88 -13.03 16 8 H 0.04 2.95 8.06 -2.91 -0.02 2.93 16 9 N -0.74 -34.65 4.93 -322.56 -1.59 -36.24 16 10 C 0.17 6.35 2.92 45.07 0.13 6.48 16 11 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 12 C -0.12 -3.10 5.35 30.62 0.16 -2.93 16 13 C -0.12 -2.02 6.06 30.53 0.19 -1.84 16 14 C 0.10 1.55 6.31 86.22 0.54 2.09 16 15 N -0.61 -16.14 2.98 -819.75 -2.44 -18.58 16 16 C 0.50 13.95 7.70 87.66 0.67 14.63 16 17 O -0.60 -23.44 15.39 -3.04 -0.05 -23.49 16 18 C -0.12 -1.85 4.03 29.85 0.12 -1.73 16 19 C -0.02 -0.41 5.06 29.85 0.15 -0.26 16 20 C -0.02 -0.28 6.49 40.95 0.27 -0.02 16 21 C -0.04 -0.82 11.79 83.52 0.98 0.17 16 22 N -0.54 -10.96 11.25 -200.32 -2.25 -13.21 16 23 C 0.19 2.42 13.04 180.26 2.35 4.77 16 24 N -0.56 -6.38 6.15 -186.49 -1.15 -7.53 16 25 H 0.43 2.45 8.96 -92.71 -0.83 1.62 16 26 C 0.10 3.79 6.02 86.36 0.52 4.31 16 27 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 28 H 0.37 16.00 5.66 -92.70 -0.52 15.48 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.01 5.94 -2.39 -0.01 1.00 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 1.30 7.68 -2.38 -0.02 1.28 16 36 H 0.12 1.40 7.95 -2.38 -0.02 1.38 16 37 H 0.08 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 39 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.24 0.93 8.06 -2.91 -0.02 0.90 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 1.99 7.00 -2.39 -0.02 1.98 16 Total: -1.00 -85.76 342.65 1.78 -83.98 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.38 Total: 23.11 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 7.43 Total: 9.15 kcal Atomic # 7 Polarization: -132.89 SS G_CDS: -7.13 Total: -140.02 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.26 kcal Total: -85.76 1.78 -83.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999317119.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.476 kcal (2) G-P(sol) polarization free energy of solvation -85.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds