Wall clock time and date at job start Tue Mar 31 2020 04:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33324 * 126.10609 * 2 1 4 4 C 1.30859 * 109.68550 * 180.02562 * 3 2 1 5 5 N 1.34498 * 109.16537 * 359.75854 * 4 3 2 6 6 C 1.46497 * 126.47730 * 180.25285 * 5 4 3 7 7 C 1.36667 * 126.10953 * 179.97438 * 2 1 3 8 8 C 1.46759 * 126.84159 * 359.96233 * 7 2 1 9 9 O 1.21687 * 120.00073 * 279.88822 * 8 7 2 10 10 N 1.34780 * 119.99904 * 99.89519 * 8 7 2 11 11 C 1.46924 * 120.63150 * 354.89485 * 10 8 7 12 12 C 1.53195 * 108.77413 * 233.58975 * 11 10 8 13 13 C 1.53043 * 109.31089 * 305.36293 * 12 11 10 14 14 C 1.53039 * 109.53698 * 61.36428 * 13 12 11 15 15 H 1.08996 * 109.49453 * 58.59268 * 14 13 12 16 16 N 1.46504 * 109.52138 * 178.66594 * 14 13 12 17 17 C 1.36934 * 119.99747 * 204.92395 * 16 14 13 18 18 H 1.08000 * 120.00266 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99835 * 180.02562 * 17 16 14 20 20 N 1.31617 * 119.99964 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00177 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46878 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47046 * 119.99871 * 21 19 17 24 24 H 1.48499 * 109.47153 * 239.99856 * 21 19 17 25 25 C 1.46923 * 120.62935 * 174.87009 * 10 8 7 26 26 H 1.08997 * 109.47307 * 270.00470 * 1 2 3 27 27 H 1.09000 * 109.47085 * 30.00475 * 1 2 3 28 28 H 1.09003 * 109.46945 * 149.99954 * 1 2 3 29 29 H 1.08001 * 125.42008 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47214 * 275.13974 * 6 5 4 31 31 H 1.09006 * 109.46650 * 35.13494 * 6 5 4 32 32 H 1.09001 * 109.46909 * 155.13345 * 6 5 4 33 33 H 1.08999 * 109.58404 * 353.37211 * 11 10 8 34 34 H 1.08994 * 109.58576 * 113.79926 * 11 10 8 35 35 H 1.08991 * 109.49622 * 65.31589 * 12 11 10 36 36 H 1.09001 * 109.49201 * 185.38167 * 12 11 10 37 37 H 1.09001 * 109.45547 * 301.34414 * 13 12 11 38 38 H 1.08994 * 109.45609 * 181.39130 * 13 12 11 39 39 H 0.97001 * 119.99879 * 24.92291 * 16 14 13 40 40 H 0.97006 * 120.00197 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.58699 * 6.62656 * 25 10 8 42 42 H 1.09000 * 109.70733 * 246.26976 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6362 0.0044 6 6 4.8306 -1.4497 0.0108 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0019 9 8 1.5312 -3.0350 1.0407 10 7 1.8757 -3.2113 -1.1474 11 6 2.1890 -2.5595 -2.4263 12 6 1.0506 -2.8372 -3.4132 13 6 0.8270 -4.3478 -3.5157 14 6 0.4245 -4.8997 -2.1462 15 1 -0.4824 -4.4005 -1.8051 16 7 0.1796 -6.3402 -2.2516 17 6 -0.6515 -6.9606 -1.3575 18 1 -1.1261 -6.3881 -0.5744 19 6 -0.8831 -8.3257 -1.4571 20 7 -0.3043 -9.0235 -2.4112 21 14 -2.0163 -9.1722 -0.2370 22 1 -2.5376 -8.1730 0.7299 23 1 -3.1511 -9.7947 -0.9651 24 1 -1.2615 -10.2218 0.4936 25 6 1.5558 -4.6452 -1.1450 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 4.3970 1.3745 -0.0011 30 1 5.1868 -1.5785 -1.0112 31 1 5.5977 -0.9503 0.6027 32 1 4.6137 -2.4253 0.4458 33 1 2.2866 -1.4845 -2.2743 34 1 3.1218 -2.9609 -2.8221 35 1 0.1379 -2.3575 -3.0600 36 1 1.3143 -2.4406 -4.3936 37 1 1.7476 -4.8295 -3.8452 38 1 0.0341 -4.5493 -4.2359 39 1 0.6062 -6.8545 -2.9548 40 1 -0.4665 -9.9774 -2.4810 41 1 1.2356 -4.9466 -0.1476 42 1 2.4362 -5.2187 -1.4349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999434455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:43 Heat of formation + Delta-G solvation = 16.626266 kcal Electronic energy + Delta-G solvation = -24142.910283 eV Core-core repulsion = 20737.342132 eV Total energy + Delta-G solvation = -3405.568151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.27818 -40.95581 -38.71176 -36.26128 -35.43531 -34.00330 -32.81688 -32.32484 -30.24015 -29.25253 -27.24091 -26.38818 -25.91033 -23.52696 -23.32898 -21.66767 -21.37341 -19.96594 -19.14498 -18.61938 -17.70368 -16.92992 -16.74324 -16.44959 -16.32562 -15.66508 -15.50211 -15.37788 -15.04765 -14.86400 -14.48608 -14.12056 -14.01312 -13.92331 -13.74298 -13.54955 -13.25520 -13.14439 -13.12135 -12.93030 -12.56974 -12.18906 -12.07578 -11.94625 -11.76627 -11.53557 -11.38573 -11.13182 -10.94723 -10.58290 -9.87913 -9.42767 -9.04502 -7.99979 -5.29083 0.64453 1.11324 1.43779 1.45089 1.54963 1.66200 1.97324 2.15627 2.52615 3.31822 3.35371 3.61435 3.69408 3.81902 3.95112 3.99742 4.11286 4.16997 4.27299 4.28545 4.32724 4.35162 4.51841 4.62161 4.66290 4.69918 4.80997 4.82825 4.85109 4.92938 4.99163 5.09258 5.14457 5.33683 5.39209 5.41721 5.49122 5.53392 6.15885 6.22868 6.25291 6.90774 6.95219 7.30158 8.01139 8.27073 9.22727 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.004018 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.780900 B = 6967.794706 C = 7221.910539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.219 3.781 5 N -0.438 5.438 6 C 0.063 3.937 7 C -0.091 4.091 8 C 0.592 3.408 9 O -0.578 6.578 10 N -0.588 5.588 11 C 0.111 3.889 12 C -0.120 4.120 13 C -0.116 4.116 14 C 0.167 3.833 15 H 0.031 0.969 16 N -0.728 5.728 17 C -0.245 4.245 18 H 0.065 0.935 19 C -0.064 4.064 20 N -0.962 5.962 21 Si 0.965 3.035 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.108 3.892 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.379 0.621 40 H 0.253 0.747 41 H 0.051 0.949 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 21.125 -1.815 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 N -0.242 5.242 4 C -0.063 4.063 5 N -0.121 5.121 6 C -0.077 4.077 7 C -0.208 4.208 8 C 0.379 3.621 9 O -0.457 6.457 10 N -0.320 5.320 11 C -0.011 4.011 12 C -0.158 4.158 13 C -0.154 4.154 14 C 0.057 3.943 15 H 0.049 0.951 16 N -0.368 5.368 17 C -0.377 4.377 18 H 0.083 0.917 19 C -0.257 4.257 20 N -0.612 5.612 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.215 1.215 24 H -0.218 1.218 25 C -0.018 4.018 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.460 21.475 -1.147 24.855 hybrid contribution -0.352 -2.136 0.694 2.273 sum 12.108 19.340 -0.453 22.821 Atomic orbital electron populations 1.20125 0.87077 1.03142 1.02712 1.21015 0.96903 0.87147 1.03612 1.70023 1.01725 1.30038 1.22393 1.25904 0.97508 0.81636 1.01236 1.45498 1.05503 1.08301 1.52780 1.22446 0.83807 0.95449 1.06041 1.20356 0.86608 0.93478 1.20312 1.17351 0.77482 0.84053 0.83226 1.90828 1.50024 1.71102 1.33701 1.48272 1.66678 1.09586 1.07445 1.21950 0.99143 0.98136 0.81829 1.21849 0.98523 0.94855 1.00602 1.21725 1.01976 0.96180 0.95561 1.20641 0.94452 0.84379 0.94810 0.95079 1.42492 1.55042 1.03833 1.35434 1.19543 1.19352 0.91530 1.07265 0.91721 1.25434 1.02530 0.97100 1.00655 1.69787 1.48826 1.06979 1.35654 0.85200 0.78413 0.78358 0.78576 1.19897 1.21479 1.21785 1.22335 0.99318 0.78906 1.01195 0.91249 0.89085 0.92168 0.72544 0.87524 0.85506 0.91820 0.89070 0.89144 0.92071 0.87155 0.91034 0.91797 0.78868 0.93800 0.93021 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 10.24 71.23 0.73 -1.09 16 2 C 0.05 1.24 7.15 41.96 0.30 1.54 16 3 N -0.52 -12.46 11.20 -187.59 -2.10 -14.56 16 4 C 0.22 3.48 12.52 180.33 2.26 5.74 16 5 N -0.44 -8.00 3.17 -539.81 -1.71 -9.72 16 6 C 0.06 0.68 11.07 127.77 1.41 2.09 16 7 C -0.09 -2.45 4.61 40.01 0.18 -2.26 16 8 C 0.59 19.88 6.61 86.47 0.57 20.46 16 9 O -0.58 -25.18 16.52 -4.31 -0.07 -25.25 16 10 N -0.59 -17.71 2.97 -823.53 -2.45 -20.16 16 11 C 0.11 2.33 6.32 86.36 0.55 2.87 16 12 C -0.12 -2.56 6.08 30.67 0.19 -2.38 16 13 C -0.12 -3.40 5.36 30.62 0.16 -3.24 16 14 C 0.17 6.61 2.92 45.07 0.13 6.74 16 15 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 16 N -0.73 -36.48 5.13 -322.57 -1.65 -38.13 16 17 C -0.25 -13.92 9.93 84.03 0.83 -13.08 16 18 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.96 -58.25 13.06 21.65 0.28 -57.97 16 21 Si 0.97 47.19 29.55 68.60 2.03 49.21 16 22 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 C 0.11 4.06 6.02 86.36 0.52 4.58 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.58 7.94 -2.39 -0.02 1.56 16 29 H 0.26 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 1.03 7.79 -2.39 -0.02 1.01 16 33 H 0.09 1.76 6.38 -2.39 -0.02 1.75 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.38 19.81 7.80 -92.71 -0.72 19.09 16 40 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 41 H 0.05 2.37 6.99 -2.39 -0.02 2.35 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -78.00 347.86 2.93 -75.08 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.30 Total: 22.77 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 8.31 Total: 18.72 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -7.63 Total: -140.53 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -78.00 2.93 -75.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999434455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -78.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds