Wall clock time and date at job start Tue Mar 31 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.59490 * 2 1 4 4 N 1.34123 * 108.02230 * 180.28057 * 3 2 1 5 5 C 1.30498 * 109.25786 * 359.73463 * 4 3 2 6 6 N 1.35050 * 108.70113 * 359.97438 * 5 4 3 7 7 C 1.46498 * 126.40073 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.46747 * 265.02300 * 7 6 5 9 9 O 1.21280 * 120.00520 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99819 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.62687 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.77486 * 126.36877 * 11 10 8 13 13 C 1.53037 * 109.31315 * 54.63188 * 12 11 10 14 14 C 1.53043 * 109.53875 * 298.63222 * 13 12 11 15 15 H 1.08996 * 109.49559 * 301.38543 * 14 13 12 16 16 N 1.46494 * 109.49640 * 181.31602 * 14 13 12 17 17 C 1.36942 * 120.00107 * 155.00428 * 16 14 13 18 18 H 1.07999 * 119.99624 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00265 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00034 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46842 * 60.00055 * 21 19 17 23 23 H 1.48504 * 109.47101 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47434 * 299.99854 * 21 19 17 25 25 C 1.46918 * 120.63391 * 179.97438 * 10 8 7 26 26 H 1.09002 * 109.47409 * 270.16565 * 1 2 3 27 27 H 1.09004 * 109.46889 * 30.16755 * 1 2 3 28 28 H 1.09004 * 109.47232 * 150.16179 * 1 2 3 29 29 H 1.08001 * 125.98893 * 0.05022 * 3 2 1 30 30 H 1.07997 * 125.65745 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46977 * 145.02461 * 7 6 5 32 32 H 1.09001 * 109.47211 * 25.02600 * 7 6 5 33 33 H 1.08998 * 109.59209 * 6.57692 * 11 10 8 34 34 H 1.09003 * 109.58217 * 246.14973 * 11 10 8 35 35 H 1.08998 * 109.49640 * 174.58442 * 12 11 10 36 36 H 1.08994 * 109.49723 * 294.64754 * 12 11 10 37 37 H 1.09004 * 109.46115 * 58.65830 * 13 12 11 38 38 H 1.08996 * 109.45814 * 178.62511 * 13 12 11 39 39 H 0.97001 * 120.00307 * 335.00159 * 16 14 13 40 40 H 0.97002 * 119.99653 * 180.02562 * 20 19 17 41 41 H 1.09008 * 109.58859 * 113.84030 * 25 10 8 42 42 H 1.09002 * 109.58786 * 353.42232 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 -0.0062 5 6 3.5968 -0.6508 -0.0044 6 7 2.3229 -1.0991 0.0037 7 6 1.8943 -2.5000 0.0088 8 6 1.6214 -2.9468 -1.4043 9 8 1.7707 -2.1717 -2.3250 10 7 1.2123 -4.2083 -1.6450 11 6 1.0275 -5.1590 -0.5400 12 6 -0.3860 -5.7438 -0.6240 13 6 -0.6029 -6.3458 -2.0141 14 6 -0.4703 -5.2491 -3.0733 15 1 -1.2011 -4.4644 -2.8779 16 7 -0.7091 -5.8202 -4.4010 17 6 -1.1486 -5.0200 -5.4217 18 1 -1.3195 -3.9679 -5.2476 19 6 -1.3753 -5.5612 -6.6796 20 7 -1.1675 -6.8434 -6.8916 21 14 -1.9755 -4.4695 -8.0717 22 1 -0.9841 -3.3918 -8.3182 23 1 -2.1384 -5.2828 -9.3035 24 1 -3.2805 -3.8662 -7.7002 25 6 0.9418 -4.6586 -3.0170 26 1 -0.3634 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5165 28 1 -0.3634 -0.8915 -0.5113 29 1 1.9866 2.1117 0.0008 30 1 4.4818 -1.2698 -0.0079 31 1 0.9861 -2.5999 0.6033 32 1 2.6809 -3.1191 0.4402 33 1 1.1533 -4.6424 0.4115 34 1 1.7604 -5.9616 -0.6222 35 1 -0.5037 -6.5207 0.1314 36 1 -1.1172 -4.9543 -0.4508 37 1 0.1442 -7.1185 -2.1959 38 1 -1.5993 -6.7843 -2.0685 39 1 -0.5559 -6.7652 -4.5573 40 1 -1.3257 -7.2215 -7.7708 41 1 1.6678 -5.4204 -3.3016 42 1 1.0110 -3.8119 -3.6999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999706414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:55 Heat of formation + Delta-G solvation = 42.140615 kcal Electronic energy + Delta-G solvation = -23723.851551 eV Core-core repulsion = 20319.389785 eV Total energy + Delta-G solvation = -3404.461766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20127 -40.02077 -37.49064 -34.66751 -34.06680 -32.45635 -31.99420 -31.29985 -28.99356 -27.62362 -26.47796 -24.99235 -24.03390 -22.03599 -21.52757 -20.97693 -19.88454 -18.96941 -17.60707 -17.16667 -17.10732 -15.73714 -15.68210 -14.96483 -14.73239 -14.45751 -14.31854 -14.04332 -13.74244 -13.55372 -13.41289 -13.11726 -13.05093 -12.85085 -12.61056 -12.52342 -12.43651 -12.23901 -11.48628 -11.16805 -10.89747 -10.77850 -10.69890 -10.30760 -10.29864 -9.98957 -9.93618 -9.77283 -9.41819 -9.14870 -8.52236 -8.30823 -7.07995 -5.84853 -3.15329 1.88944 2.47750 2.52244 3.07159 3.19138 3.42189 3.46350 3.48195 4.22695 4.37290 4.50966 4.58848 4.64263 4.66863 4.73523 4.90532 5.06839 5.08016 5.35807 5.37601 5.39773 5.40542 5.45592 5.67509 5.70893 5.76344 5.78387 5.88220 6.03234 6.08336 6.21626 6.29861 6.35625 6.54352 6.70693 6.72059 6.87240 7.08291 7.41245 7.65002 8.03988 8.10727 8.33139 9.45128 9.97767 10.32805 11.37152 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.004006 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.583544 B = 6987.547619 C = 7954.055546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.011 4.011 3 C -0.032 4.032 4 N -0.493 5.493 5 C 0.187 3.813 6 N -0.442 5.442 7 C 0.086 3.914 8 C 0.490 3.510 9 O -0.520 6.520 10 N -0.602 5.602 11 C 0.104 3.896 12 C -0.130 4.130 13 C -0.127 4.127 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.717 5.717 17 C -0.247 4.247 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.092 3.908 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.167 0.833 30 H 0.202 0.798 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.063 0.937 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 4.449 20.344 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C -0.179 4.179 4 N -0.210 5.210 5 C -0.095 4.095 6 N -0.126 5.126 7 C -0.041 4.041 8 C 0.275 3.725 9 O -0.395 6.395 10 N -0.337 5.337 11 C -0.019 4.019 12 C -0.169 4.169 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.358 5.358 17 C -0.378 4.378 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.032 4.032 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.185 0.815 30 H 0.218 0.782 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.936 5.358 19.679 20.984 hybrid contribution -0.874 -0.520 -0.958 1.396 sum 4.062 4.838 18.721 19.758 Atomic orbital electron populations 1.20219 0.87368 1.03814 1.02198 1.21223 0.94544 0.86675 1.10078 1.21980 0.88405 0.98311 1.09212 1.70236 1.22486 1.08757 1.19534 1.24828 0.86922 0.91846 1.05889 1.44911 1.07464 1.05372 1.54809 1.21752 1.04092 0.81320 0.96955 1.20625 0.78604 0.82550 0.90736 1.90806 1.51065 1.52376 1.45221 1.48319 1.65758 1.10295 1.09295 1.21807 0.98214 0.92947 0.88932 1.21883 0.95915 1.00646 0.98440 1.21834 1.02434 0.98798 0.93467 1.20468 0.93001 0.94229 0.86509 0.93189 1.42365 1.79063 1.09353 1.04999 1.19209 1.37176 0.92159 0.89250 0.91135 1.24741 1.01955 0.96008 0.97701 1.69647 1.54808 1.10855 1.22608 0.86271 0.78759 0.79492 0.81721 1.21062 1.21580 1.21134 1.22869 0.99716 1.00516 0.80097 0.91077 0.89845 0.91756 0.81547 0.78163 0.86472 0.86046 0.90613 0.90884 0.90763 0.91542 0.91923 0.91250 0.78017 0.93326 0.91844 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.08 36.00 0.36 -0.40 16 2 C -0.01 -0.14 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.43 11.79 -17.81 -0.21 -0.64 16 4 N -0.49 -7.31 11.25 -14.67 -0.16 -7.48 16 5 C 0.19 2.35 12.56 -90.37 -1.13 1.21 16 6 N -0.44 -5.28 2.24 -115.27 -0.26 -5.54 16 7 C 0.09 0.78 4.62 -5.20 -0.02 0.76 16 8 C 0.49 6.84 7.77 -10.98 -0.09 6.75 16 9 O -0.52 -10.06 15.84 5.56 0.09 -9.97 16 10 N -0.60 -7.97 2.97 -172.79 -0.51 -8.49 16 11 C 0.10 0.92 6.34 -3.71 -0.02 0.89 16 12 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 13 C -0.13 -1.79 5.35 -26.69 -0.14 -1.94 16 14 C 0.17 3.15 2.92 -67.83 -0.20 2.96 16 15 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 16 N -0.72 -17.26 5.12 -53.33 -0.27 -17.53 16 17 C -0.25 -6.77 9.93 -15.06 -0.15 -6.92 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 21 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.09 1.63 6.01 -3.73 -0.02 1.61 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.69 7.96 -51.93 -0.41 0.28 16 29 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.12 0.78 7.58 -51.93 -0.39 0.39 16 32 H 0.12 0.69 7.93 -51.93 -0.41 0.28 16 33 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.39 9.77 7.80 -40.82 -0.32 9.45 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.09 1.95 7.01 -51.93 -0.36 1.59 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -35.49 346.94 -9.05 -44.53 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.40 Total: 6.85 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.45 Total: 1.83 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.49 Total: -65.90 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.49 -9.05 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999706414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.674 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds