Wall clock time and date at job start Tue Mar 31 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34671 * 126.59490 * 2 1 4 4 N 1.34123 * 108.02230 * 180.28057 * 3 2 1 5 5 C 1.30498 * 109.25786 * 359.73463 * 4 3 2 6 6 N 1.35050 * 108.70113 * 359.97438 * 5 4 3 7 7 C 1.46498 * 126.40073 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.46747 * 265.02300 * 7 6 5 9 9 O 1.21280 * 120.00520 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99819 * 179.97438 * 8 7 6 11 11 C 1.46929 * 120.62687 * 0.02562 * 10 8 7 12 12 C 1.53196 * 108.77486 * 126.36877 * 11 10 8 13 13 C 1.53037 * 109.31315 * 54.63188 * 12 11 10 14 14 C 1.53043 * 109.53875 * 298.63222 * 13 12 11 15 15 H 1.08996 * 109.49559 * 301.38543 * 14 13 12 16 16 N 1.46494 * 109.49640 * 181.31602 * 14 13 12 17 17 C 1.36942 * 120.00107 * 155.00428 * 16 14 13 18 18 H 1.07999 * 119.99624 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00265 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00034 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99828 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46842 * 60.00055 * 21 19 17 23 23 H 1.48504 * 109.47101 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47434 * 299.99854 * 21 19 17 25 25 C 1.46918 * 120.63391 * 179.97438 * 10 8 7 26 26 H 1.09002 * 109.47409 * 270.16565 * 1 2 3 27 27 H 1.09004 * 109.46889 * 30.16755 * 1 2 3 28 28 H 1.09004 * 109.47232 * 150.16179 * 1 2 3 29 29 H 1.08001 * 125.98893 * 0.05022 * 3 2 1 30 30 H 1.07997 * 125.65745 * 180.02562 * 5 4 3 31 31 H 1.09005 * 109.46977 * 145.02461 * 7 6 5 32 32 H 1.09001 * 109.47211 * 25.02600 * 7 6 5 33 33 H 1.08998 * 109.59209 * 6.57692 * 11 10 8 34 34 H 1.09003 * 109.58217 * 246.14973 * 11 10 8 35 35 H 1.08998 * 109.49640 * 174.58442 * 12 11 10 36 36 H 1.08994 * 109.49723 * 294.64754 * 12 11 10 37 37 H 1.09004 * 109.46115 * 58.65830 * 13 12 11 38 38 H 1.08996 * 109.45814 * 178.62511 * 13 12 11 39 39 H 0.97001 * 120.00307 * 335.00159 * 16 14 13 40 40 H 0.97002 * 119.99653 * 180.02562 * 20 19 17 41 41 H 1.09008 * 109.58859 * 113.84030 * 25 10 8 42 42 H 1.09002 * 109.58786 * 353.42232 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6541 -0.0062 5 6 3.5968 -0.6508 -0.0044 6 7 2.3229 -1.0991 0.0037 7 6 1.8943 -2.5000 0.0088 8 6 1.6214 -2.9468 -1.4043 9 8 1.7707 -2.1717 -2.3250 10 7 1.2123 -4.2083 -1.6450 11 6 1.0275 -5.1590 -0.5400 12 6 -0.3860 -5.7438 -0.6240 13 6 -0.6029 -6.3458 -2.0141 14 6 -0.4703 -5.2491 -3.0733 15 1 -1.2011 -4.4644 -2.8779 16 7 -0.7091 -5.8202 -4.4010 17 6 -1.1486 -5.0200 -5.4217 18 1 -1.3195 -3.9679 -5.2476 19 6 -1.3753 -5.5612 -6.6796 20 7 -1.1675 -6.8434 -6.8916 21 14 -1.9755 -4.4695 -8.0717 22 1 -0.9841 -3.3918 -8.3182 23 1 -2.1384 -5.2828 -9.3035 24 1 -3.2805 -3.8662 -7.7002 25 6 0.9418 -4.6586 -3.0170 26 1 -0.3634 0.0030 1.0277 27 1 -0.3633 0.8885 -0.5165 28 1 -0.3634 -0.8915 -0.5113 29 1 1.9866 2.1117 0.0008 30 1 4.4818 -1.2698 -0.0079 31 1 0.9861 -2.5999 0.6033 32 1 2.6809 -3.1191 0.4402 33 1 1.1533 -4.6424 0.4115 34 1 1.7604 -5.9616 -0.6222 35 1 -0.5037 -6.5207 0.1314 36 1 -1.1172 -4.9543 -0.4508 37 1 0.1442 -7.1185 -2.1959 38 1 -1.5993 -6.7843 -2.0685 39 1 -0.5559 -6.7652 -4.5573 40 1 -1.3257 -7.2215 -7.7708 41 1 1.6678 -5.4204 -3.3016 42 1 1.0110 -3.8119 -3.6999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999706414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:55 Heat of formation + Delta-G solvation = 18.444416 kcal Electronic energy + Delta-G solvation = -23724.879095 eV Core-core repulsion = 20319.389785 eV Total energy + Delta-G solvation = -3405.489311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.10316 -41.14226 -38.75441 -36.27190 -35.05874 -33.93404 -32.83871 -32.75183 -30.45492 -28.75100 -27.32682 -26.07675 -25.88608 -23.27488 -22.46142 -22.13711 -21.01711 -20.00779 -19.15891 -18.58136 -18.04784 -16.99218 -16.72275 -16.45273 -15.96496 -15.57664 -15.46412 -15.29826 -15.23003 -14.69751 -14.62156 -14.07871 -14.01348 -13.92269 -13.69606 -13.59831 -13.28533 -13.18877 -13.09758 -12.91759 -12.51811 -12.28823 -12.03610 -11.90408 -11.71336 -11.38708 -11.34185 -11.11486 -10.94961 -10.41979 -9.80173 -9.22476 -9.04947 -8.02314 -5.31355 0.96016 1.41430 1.43620 1.45323 1.50178 1.68950 2.08395 2.22650 2.50460 3.30916 3.35453 3.72923 3.75888 3.80523 3.88394 3.99195 4.04488 4.07827 4.21539 4.25430 4.32307 4.37702 4.51954 4.61287 4.72275 4.74934 4.84544 4.86457 4.89300 5.01339 5.03448 5.16597 5.36937 5.40842 5.41257 5.46054 5.53472 5.81580 6.19468 6.21379 6.40404 7.04757 7.11663 7.27544 8.00482 8.24444 9.20075 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.004006 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.583544 B = 6987.547619 C = 7954.055546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.060 4.060 4 N -0.532 5.532 5 C 0.181 3.819 6 N -0.446 5.446 7 C 0.093 3.907 8 C 0.486 3.514 9 O -0.586 6.586 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.122 4.122 13 C -0.120 4.120 14 C 0.168 3.832 15 H 0.031 0.969 16 N -0.730 5.730 17 C -0.248 4.248 18 H 0.063 0.937 19 C -0.064 4.064 20 N -0.963 5.963 21 Si 0.965 3.035 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.109 3.891 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.177 0.823 30 H 0.231 0.769 31 H 0.154 0.846 32 H 0.170 0.830 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.377 0.623 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 3.826 23.636 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.133 4.133 3 C -0.206 4.206 4 N -0.251 5.251 5 C -0.101 4.101 6 N -0.129 5.129 7 C -0.032 4.032 8 C 0.274 3.726 9 O -0.465 6.465 10 N -0.331 5.331 11 C -0.023 4.023 12 C -0.161 4.161 13 C -0.158 4.158 14 C 0.058 3.942 15 H 0.049 0.951 16 N -0.370 5.370 17 C -0.380 4.380 18 H 0.081 0.919 19 C -0.257 4.257 20 N -0.612 5.612 21 Si 0.794 3.206 22 H -0.212 1.212 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.017 4.017 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.247 0.753 31 H 0.172 0.828 32 H 0.187 0.813 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.210 0.790 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.973 4.733 23.055 24.056 hybrid contribution -0.869 -0.312 -1.929 2.138 sum 4.104 4.420 21.126 21.971 Atomic orbital electron populations 1.20277 0.85661 1.03345 1.03886 1.21649 0.95720 0.86807 1.09097 1.22326 0.88530 0.99462 1.10329 1.70187 1.23440 1.10388 1.21049 1.25455 0.88165 0.91696 1.04756 1.45083 1.07169 1.06330 1.54306 1.22065 1.07448 0.80320 0.93404 1.21550 0.77023 0.81729 0.92340 1.90789 1.53820 1.54153 1.47775 1.48316 1.65135 1.11245 1.08414 1.22261 0.97930 0.93034 0.89105 1.21890 0.96621 1.01626 0.95918 1.21759 1.02061 0.97256 0.94768 1.20661 0.92734 0.95300 0.85522 0.95116 1.42520 1.79273 1.08741 1.06515 1.19452 1.35940 0.92174 0.90393 0.91875 1.25439 1.03168 0.97250 0.99871 1.69771 1.56537 1.12171 1.22763 0.85353 0.78384 0.77819 0.79078 1.21247 1.21434 1.20248 1.22185 0.98811 0.98225 0.82525 0.88172 0.89695 0.92822 0.80606 0.75259 0.82849 0.81305 0.85477 0.89180 0.86865 0.91463 0.91540 0.92279 0.79003 0.93756 0.92364 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.08 71.24 0.72 -0.59 16 2 C -0.02 -0.43 6.95 40.95 0.28 -0.14 16 3 C -0.06 -1.61 11.79 83.52 0.98 -0.63 16 4 N -0.53 -15.57 11.25 -200.31 -2.25 -17.82 16 5 C 0.18 4.23 12.56 180.26 2.26 6.49 16 6 N -0.45 -9.51 2.24 -518.61 -1.16 -10.68 16 7 C 0.09 1.28 4.62 85.63 0.40 1.67 16 8 C 0.49 12.62 7.77 87.65 0.68 13.30 16 9 O -0.59 -23.04 15.84 -3.03 -0.05 -23.09 16 10 N -0.60 -14.54 2.97 -818.96 -2.43 -16.98 16 11 C 0.10 1.21 6.34 86.36 0.55 1.76 16 12 C -0.12 -1.84 6.08 30.67 0.19 -1.65 16 13 C -0.12 -3.20 5.35 30.62 0.16 -3.03 16 14 C 0.17 6.33 2.92 45.06 0.13 6.46 16 15 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 16 N -0.73 -36.33 5.12 -322.64 -1.65 -37.98 16 17 C -0.25 -14.05 9.93 84.03 0.83 -13.21 16 18 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 19 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.96 -58.43 13.06 21.65 0.28 -58.14 16 21 Si 0.96 47.21 29.55 68.60 2.03 49.24 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 C 0.11 3.92 6.01 86.35 0.52 4.44 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.06 7.96 -2.38 -0.02 1.04 16 29 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 30 H 0.23 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.15 1.08 7.58 -2.38 -0.02 1.06 16 32 H 0.17 0.78 7.93 -2.39 -0.02 0.76 16 33 H 0.13 0.38 5.93 -2.39 -0.01 0.36 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.38 19.74 7.80 -92.71 -0.72 19.02 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.04 1.91 7.01 -2.39 -0.02 1.90 16 Total: -1.00 -84.33 346.94 3.23 -81.10 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.30 Total: 22.75 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 8.18 Total: 11.60 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -7.22 Total: -141.60 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -84.33 3.23 -81.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999706414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.546 kcal (2) G-P(sol) polarization free energy of solvation -84.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds