Wall clock time and date at job start Tue Mar 31 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35308 * 126.12896 * 2 1 4 4 C 1.39871 * 107.92131 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.89662 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46747 * 125.00232 * 5 4 3 7 7 O 1.21275 * 120.00238 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99486 * 179.72218 * 6 5 4 9 9 C 1.46505 * 119.99702 * 180.26887 * 8 6 5 10 10 H 1.08997 * 109.49448 * 34.94263 * 9 8 6 11 11 C 1.53045 * 109.49430 * 154.99999 * 9 8 6 12 12 C 1.53035 * 109.53437 * 181.31768 * 11 9 8 13 13 C 1.53189 * 109.31561 * 298.63518 * 12 11 9 14 14 N 1.46922 * 108.77644 * 54.63676 * 13 12 11 15 15 C 1.36941 * 120.63194 * 126.41400 * 14 13 12 16 16 H 1.07997 * 119.99606 * 207.67942 * 15 14 13 17 17 C 1.38804 * 119.99955 * 27.67426 * 15 14 13 18 18 N 1.31625 * 119.99913 * 17.35916 * 17 15 14 19 19 Si 1.86798 * 120.00133 * 197.35528 * 17 15 14 20 20 H 1.48504 * 109.47076 * 60.00231 * 19 17 15 21 21 H 1.48498 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47160 * 300.00361 * 19 17 15 23 23 C 1.46933 * 118.73856 * 306.39235 * 14 13 12 24 24 N 1.30836 * 108.20297 * 0.26166 * 4 3 2 25 25 N 1.34954 * 126.12286 * 179.97438 * 2 1 3 26 26 H 0.96998 * 126.03557 * 0.03346 * 25 2 1 27 27 H 1.08996 * 109.47295 * 89.99720 * 1 2 3 28 28 H 1.09003 * 109.47218 * 210.00434 * 1 2 3 29 29 H 1.09001 * 109.46988 * 329.99740 * 1 2 3 30 30 H 1.08003 * 126.03887 * 359.97438 * 3 2 1 31 31 H 1.08992 * 109.47170 * 4.99325 * 5 4 3 32 32 H 1.09001 * 109.46648 * 244.99610 * 5 4 3 33 33 H 0.97002 * 120.00238 * 0.27779 * 8 6 5 34 34 H 1.08995 * 109.45975 * 301.34272 * 11 9 8 35 35 H 1.09000 * 109.45800 * 61.31109 * 11 9 8 36 36 H 1.08997 * 109.49900 * 58.58967 * 12 11 9 37 37 H 1.09007 * 109.49511 * 178.68486 * 12 11 9 38 38 H 1.09004 * 109.58972 * 174.42726 * 13 12 11 39 39 H 1.09004 * 109.58493 * 294.70576 * 13 12 11 40 40 H 0.96998 * 119.99591 * 180.02562 * 18 17 15 41 41 H 1.08991 * 109.58305 * 293.82281 * 23 14 13 42 42 H 1.08996 * 109.58466 * 173.39421 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5394 0.0013 6 6 5.7384 1.1735 1.1656 7 8 5.4094 0.2833 1.9206 8 7 6.8973 1.8322 1.3647 9 6 7.7597 1.4725 2.4931 10 1 7.7043 0.3976 2.6651 11 6 9.2047 1.8653 2.1771 12 6 10.1115 1.4602 3.3414 13 6 9.6739 2.2043 4.6070 14 7 8.2457 1.9473 4.8368 15 6 7.8085 1.4661 6.0420 16 1 6.9070 0.8735 6.0918 17 6 8.5240 1.7398 7.1995 18 7 9.4050 2.7177 7.2128 19 14 8.2367 0.7206 8.7383 20 1 8.5462 -0.7037 8.4536 21 1 9.1178 1.2108 9.8284 22 1 6.8171 0.8446 9.1562 23 6 7.2954 2.2168 3.7490 24 7 3.6334 -0.6525 -0.0047 25 7 2.3026 -1.0901 0.0005 26 1 2.0054 -2.0134 0.0004 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9741 2.1210 -0.0004 31 1 4.5484 2.5817 0.0908 32 1 5.4037 1.4007 -0.9298 33 1 7.1603 2.5445 0.7611 34 1 9.5293 1.3560 1.2697 35 1 9.2638 2.9436 2.0291 36 1 10.0340 0.3856 3.5061 37 1 11.1438 1.7192 3.1057 38 1 10.2514 1.8465 5.4594 39 1 9.8386 3.2740 4.4773 40 1 9.9052 2.9087 8.0215 41 1 7.2639 3.2876 3.5485 42 1 6.3036 1.8671 4.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007078500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:08 Heat of formation + Delta-G solvation = 49.449451 kcal Electronic energy + Delta-G solvation = -23213.377776 eV Core-core repulsion = 19809.232944 eV Total energy + Delta-G solvation = -3404.144831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31860 -39.39805 -37.25165 -34.19992 -33.39410 -32.36262 -31.66901 -30.40516 -29.43105 -27.72248 -27.07820 -25.22326 -22.43575 -22.01370 -20.84511 -20.41000 -19.68476 -19.01324 -17.47338 -16.71107 -16.66206 -15.54875 -15.16542 -14.82467 -14.67892 -14.00984 -13.94928 -13.77834 -13.51434 -13.23098 -13.14339 -13.10328 -12.83090 -12.48901 -12.33724 -12.18907 -11.98160 -11.72543 -11.02571 -10.81559 -10.73429 -10.56372 -10.21802 -10.18511 -9.85991 -9.83675 -9.56266 -9.49899 -9.21213 -8.71134 -8.64185 -8.32924 -6.61371 -5.73130 -3.14725 1.82781 2.64768 2.79878 3.01113 3.44821 3.48964 3.51651 3.58661 4.43771 4.55357 4.57990 4.84084 5.09512 5.12699 5.16519 5.32634 5.37206 5.45670 5.51817 5.60302 5.61361 5.66911 5.69515 5.80084 6.03057 6.16365 6.24224 6.31461 6.55318 6.59722 6.67460 6.77092 6.78220 6.91820 7.09300 7.22886 7.41498 7.68590 7.69933 7.88037 7.88470 8.50658 8.62907 9.27986 9.90504 10.46196 11.35604 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.003533 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.782596 B = 7922.316955 C = 8975.879478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.061 4.061 6 C 0.510 3.490 7 O -0.520 6.520 8 N -0.725 5.725 9 C 0.127 3.873 10 H 0.084 0.916 11 C -0.114 4.114 12 C -0.140 4.140 13 C 0.167 3.833 14 N -0.588 5.588 15 C -0.249 4.249 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.143 3.857 24 N -0.260 5.260 25 N -0.476 5.476 26 H 0.435 0.565 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.394 0.606 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.017 0.983 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 -0.975 -18.903 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.295 4.295 4 C -0.077 4.077 5 C -0.103 4.103 6 C 0.295 3.705 7 O -0.394 6.394 8 N -0.377 5.377 9 C 0.022 3.978 10 H 0.102 0.898 11 C -0.152 4.152 12 C -0.180 4.180 13 C 0.042 3.958 14 N -0.311 5.311 15 C -0.379 4.379 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.015 3.985 24 N -0.083 5.083 25 N -0.185 5.185 26 H 0.279 0.721 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.227 0.773 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.035 0.965 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.199 -2.608 -18.175 21.507 hybrid contribution -0.628 0.174 0.547 0.851 sum -11.827 -2.434 -17.628 21.366 Atomic orbital electron populations 1.20437 0.87396 1.03990 1.03162 1.21068 0.94515 0.87850 1.01497 1.21083 0.91424 0.99155 1.17807 1.21516 0.94494 0.91582 1.00075 1.20062 0.92050 0.99229 0.98963 1.20271 0.81709 0.82389 0.86180 1.90772 1.72040 1.30039 1.46587 1.46100 1.21766 1.38616 1.31228 1.21699 0.88689 1.01239 0.86204 0.89760 1.21668 0.94440 1.00666 0.98437 1.22180 0.97181 1.01421 0.97187 1.20832 0.85237 0.95558 0.94216 1.43994 1.01146 1.75908 1.10034 1.19193 1.09981 1.25018 0.83709 0.91666 1.25005 1.00167 0.97102 0.97366 1.70036 1.28632 1.28493 1.27815 0.86355 0.77582 0.80218 0.82575 1.20999 1.21644 1.20884 1.21181 0.94111 0.95504 0.87664 1.77426 0.95479 1.12483 1.22871 1.46331 1.04227 1.08136 1.59830 0.72108 0.90300 0.91164 0.89569 0.83566 0.87041 0.87513 0.77302 0.93135 0.92269 0.92481 0.92777 0.89324 0.96329 0.93659 0.96522 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 10.43 36.01 0.38 -0.17 16 2 C 0.08 0.82 7.21 -82.26 -0.59 0.22 16 3 C -0.27 -3.07 10.64 -40.02 -0.43 -3.50 16 4 C 0.09 1.26 6.01 -82.40 -0.50 0.76 16 5 C -0.06 -0.69 6.28 -29.03 -0.18 -0.88 16 6 C 0.51 8.14 7.79 -10.98 -0.09 8.06 16 7 O -0.52 -11.08 15.23 5.56 0.08 -11.00 16 8 N -0.73 -10.58 5.08 -53.69 -0.27 -10.85 16 9 C 0.13 2.37 2.61 -67.81 -0.18 2.19 16 10 H 0.08 1.84 7.58 -51.93 -0.39 1.44 16 11 C -0.11 -1.89 5.35 -26.69 -0.14 -2.03 16 12 C -0.14 -2.69 6.08 -26.62 -0.16 -2.85 16 13 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 14 N -0.59 -15.41 3.00 -172.32 -0.52 -15.92 16 15 C -0.25 -7.23 9.59 -15.06 -0.14 -7.37 16 16 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -26.79 11.19 55.49 0.62 -26.17 16 19 Si 0.90 22.57 29.59 -169.99 -5.03 17.54 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 24 N -0.26 -4.03 12.06 33.67 0.41 -3.63 16 25 N -0.48 -5.60 7.36 33.48 0.25 -5.35 16 26 H 0.44 3.72 8.96 -182.61 -1.64 2.09 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.39 4.21 8.60 -40.82 -0.35 3.86 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -36.84 346.01 -9.13 -45.97 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.73 Total: 2.56 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.16 Total: 1.64 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.48 Total: -61.92 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -11.00 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.84 -9.13 -45.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007078500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.424 kcal (2) G-P(sol) polarization free energy of solvation -36.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds