Wall clock time and date at job start Tue Mar 31 2020 04:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35308 * 126.12896 * 2 1 4 4 C 1.39871 * 107.92131 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.89662 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46747 * 125.00232 * 5 4 3 7 7 O 1.21275 * 120.00238 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99486 * 179.72218 * 6 5 4 9 9 C 1.46505 * 119.99702 * 180.26887 * 8 6 5 10 10 H 1.08997 * 109.49448 * 34.94263 * 9 8 6 11 11 C 1.53045 * 109.49430 * 154.99999 * 9 8 6 12 12 C 1.53035 * 109.53437 * 181.31768 * 11 9 8 13 13 C 1.53189 * 109.31561 * 298.63518 * 12 11 9 14 14 N 1.46922 * 108.77644 * 54.63676 * 13 12 11 15 15 C 1.36941 * 120.63194 * 126.41400 * 14 13 12 16 16 H 1.07997 * 119.99606 * 207.67942 * 15 14 13 17 17 C 1.38804 * 119.99955 * 27.67426 * 15 14 13 18 18 N 1.31625 * 119.99913 * 17.35916 * 17 15 14 19 19 Si 1.86798 * 120.00133 * 197.35528 * 17 15 14 20 20 H 1.48504 * 109.47076 * 60.00231 * 19 17 15 21 21 H 1.48498 * 109.47167 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47160 * 300.00361 * 19 17 15 23 23 C 1.46933 * 118.73856 * 306.39235 * 14 13 12 24 24 N 1.30836 * 108.20297 * 0.26166 * 4 3 2 25 25 N 1.34954 * 126.12286 * 179.97438 * 2 1 3 26 26 H 0.96998 * 126.03557 * 0.03346 * 25 2 1 27 27 H 1.08996 * 109.47295 * 89.99720 * 1 2 3 28 28 H 1.09003 * 109.47218 * 210.00434 * 1 2 3 29 29 H 1.09001 * 109.46988 * 329.99740 * 1 2 3 30 30 H 1.08003 * 126.03887 * 359.97438 * 3 2 1 31 31 H 1.08992 * 109.47170 * 4.99325 * 5 4 3 32 32 H 1.09001 * 109.46648 * 244.99610 * 5 4 3 33 33 H 0.97002 * 120.00238 * 0.27779 * 8 6 5 34 34 H 1.08995 * 109.45975 * 301.34272 * 11 9 8 35 35 H 1.09000 * 109.45800 * 61.31109 * 11 9 8 36 36 H 1.08997 * 109.49900 * 58.58967 * 12 11 9 37 37 H 1.09007 * 109.49511 * 178.68486 * 12 11 9 38 38 H 1.09004 * 109.58972 * 174.42726 * 13 12 11 39 39 H 1.09004 * 109.58493 * 294.70576 * 13 12 11 40 40 H 0.96998 * 119.99591 * 180.02562 * 18 17 15 41 41 H 1.08991 * 109.58305 * 293.82281 * 23 14 13 42 42 H 1.08996 * 109.58466 * 173.39421 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6558 0.0006 5 6 4.8543 1.5394 0.0013 6 6 5.7384 1.1735 1.1656 7 8 5.4094 0.2833 1.9206 8 7 6.8973 1.8322 1.3647 9 6 7.7597 1.4725 2.4931 10 1 7.7043 0.3976 2.6651 11 6 9.2047 1.8653 2.1771 12 6 10.1115 1.4602 3.3414 13 6 9.6739 2.2043 4.6070 14 7 8.2457 1.9473 4.8368 15 6 7.8085 1.4661 6.0420 16 1 6.9070 0.8735 6.0918 17 6 8.5240 1.7398 7.1995 18 7 9.4050 2.7177 7.2128 19 14 8.2367 0.7206 8.7383 20 1 8.5462 -0.7037 8.4536 21 1 9.1178 1.2108 9.8284 22 1 6.8171 0.8446 9.1562 23 6 7.2954 2.2168 3.7490 24 7 3.6334 -0.6525 -0.0047 25 7 2.3026 -1.0901 0.0005 26 1 2.0054 -2.0134 0.0004 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.9741 2.1210 -0.0004 31 1 4.5484 2.5817 0.0908 32 1 5.4037 1.4007 -0.9298 33 1 7.1603 2.5445 0.7611 34 1 9.5293 1.3560 1.2697 35 1 9.2638 2.9436 2.0291 36 1 10.0340 0.3856 3.5061 37 1 11.1438 1.7192 3.1057 38 1 10.2514 1.8465 5.4594 39 1 9.8386 3.2740 4.4773 40 1 9.9052 2.9087 8.0215 41 1 7.2639 3.2876 3.5485 42 1 6.3036 1.8671 4.0353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007078500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:07 Heat of formation + Delta-G solvation = 21.941871 kcal Electronic energy + Delta-G solvation = -23214.570594 eV Core-core repulsion = 19809.232944 eV Total energy + Delta-G solvation = -3405.337650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19689 -40.75720 -38.91501 -35.89175 -34.35256 -34.04685 -32.47756 -32.34138 -30.79683 -28.95638 -27.79845 -27.26089 -23.98928 -23.82897 -21.99247 -21.40048 -21.17012 -20.30888 -18.72950 -18.33486 -17.82949 -17.15737 -16.63260 -16.27024 -15.90505 -15.65103 -15.27803 -15.03356 -14.75053 -14.60669 -14.33453 -14.20630 -14.05049 -13.78245 -13.52253 -13.37378 -13.12433 -13.00761 -12.79821 -12.73010 -12.54068 -12.14259 -11.97605 -11.74761 -11.56124 -11.47306 -11.30035 -10.81529 -10.61834 -10.23879 -10.02968 -9.48840 -8.70085 -7.92188 -5.37392 0.98064 1.41970 1.44438 1.52155 1.71824 1.78871 2.02118 2.35730 2.52030 3.21320 3.61452 3.70443 3.82534 3.90441 4.13622 4.15328 4.22044 4.28605 4.46529 4.49304 4.55788 4.60247 4.77006 4.80977 4.82585 4.89121 4.93092 5.03586 5.11588 5.13408 5.20118 5.28684 5.30035 5.48463 5.61453 5.61977 5.72505 5.76520 6.35322 6.49258 6.72056 6.79937 7.11460 7.44388 7.81744 8.31095 9.13175 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.003533 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.782596 B = 7922.316955 C = 8975.879478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.085 3.915 3 C -0.287 4.287 4 C 0.072 3.928 5 C -0.051 4.051 6 C 0.506 3.494 7 O -0.581 6.581 8 N -0.708 5.708 9 C 0.143 3.857 10 H 0.048 0.952 11 C -0.103 4.103 12 C -0.131 4.131 13 C 0.171 3.829 14 N -0.608 5.608 15 C -0.271 4.271 16 H 0.049 0.951 17 C -0.042 4.042 18 N -0.928 5.928 19 Si 0.965 3.035 20 H -0.281 1.281 21 H -0.283 1.283 22 H -0.279 1.279 23 C 0.147 3.853 24 N -0.318 5.318 25 N -0.479 5.479 26 H 0.444 0.556 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.170 0.830 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.419 0.581 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.008 0.992 40 H 0.253 0.747 41 H 0.025 0.975 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 -0.097 -21.008 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.316 4.316 4 C -0.095 4.095 5 C -0.092 4.092 6 C 0.293 3.707 7 O -0.460 6.460 8 N -0.361 5.361 9 C 0.036 3.964 10 H 0.066 0.934 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.046 3.954 14 N -0.332 5.332 15 C -0.402 4.402 16 H 0.067 0.933 17 C -0.238 4.238 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.207 1.207 21 H -0.209 1.209 22 H -0.205 1.205 23 C 0.020 3.980 24 N -0.141 5.141 25 N -0.189 5.189 26 H 0.289 0.711 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.188 0.812 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.256 0.744 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.800 -1.698 -20.344 23.580 hybrid contribution -0.527 -0.093 1.197 1.311 sum -12.327 -1.792 -19.147 22.842 Atomic orbital electron populations 1.20590 0.84173 1.05074 1.04794 1.21796 0.96411 0.87045 0.99176 1.21488 0.90792 1.00730 1.18542 1.22022 0.96179 0.91514 0.99747 1.20185 0.90688 1.00635 0.97708 1.21159 0.81807 0.81163 0.86575 1.90754 1.73368 1.32779 1.49062 1.45839 1.20992 1.39085 1.30198 1.21174 0.90892 0.98410 0.85944 0.93403 1.21599 0.91700 1.02334 0.98433 1.22026 0.99531 0.99756 0.95730 1.20723 0.83873 0.95338 0.95466 1.44224 1.02577 1.76273 1.10151 1.19341 1.09957 1.25370 0.85495 0.93347 1.25697 1.00088 0.98055 0.99973 1.70157 1.29220 1.29479 1.28445 0.85394 0.77587 0.78638 0.79156 1.20732 1.20884 1.20468 1.21208 0.92102 0.96188 0.88527 1.77323 0.97702 1.13873 1.25240 1.46396 1.03613 1.09183 1.59747 0.71068 0.88236 0.90065 0.88471 0.81249 0.83330 0.84415 0.74380 0.89539 0.90159 0.93870 0.89598 0.92817 0.97394 0.93755 0.95695 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.43 71.24 0.74 -0.08 16 2 C 0.08 1.63 7.21 41.40 0.30 1.93 16 3 C -0.29 -6.19 10.64 21.99 0.23 -5.95 16 4 C 0.07 1.93 6.01 43.10 0.26 2.19 16 5 C -0.05 -1.04 6.28 29.10 0.18 -0.86 16 6 C 0.51 15.78 7.79 87.66 0.68 16.46 16 7 O -0.58 -25.61 15.23 -3.01 -0.05 -25.65 16 8 N -0.71 -19.36 5.08 -442.16 -2.25 -21.60 16 9 C 0.14 5.24 2.61 45.07 0.12 5.36 16 10 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 11 C -0.10 -3.11 5.35 30.62 0.16 -2.95 16 12 C -0.13 -4.85 6.08 30.67 0.19 -4.67 16 13 C 0.17 8.40 5.31 86.36 0.46 8.85 16 14 N -0.61 -32.86 3.00 -699.11 -2.09 -34.95 16 15 C -0.27 -16.35 9.59 84.03 0.81 -15.55 16 16 H 0.05 3.00 7.89 -2.91 -0.02 2.98 16 17 C -0.04 -2.48 4.91 84.86 0.42 -2.06 16 18 N -0.93 -56.11 11.19 21.65 0.24 -55.87 16 19 Si 0.96 47.42 29.59 68.60 2.03 49.45 16 20 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 21 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 23 C 0.15 6.76 6.09 86.36 0.53 7.28 16 24 N -0.32 -9.96 12.06 -47.38 -0.57 -10.53 16 25 N -0.48 -11.19 7.36 -48.00 -0.35 -11.54 16 26 H 0.44 7.65 8.96 -213.33 -1.91 5.74 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.15 1.88 8.12 -2.39 -0.02 1.86 16 32 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.42 7.39 8.60 -92.71 -0.80 6.59 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 38 H 0.05 2.99 6.04 -2.38 -0.01 2.97 16 39 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.02 1.24 7.93 -2.39 -0.02 1.22 16 Total: -1.00 -85.71 346.01 0.36 -85.34 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -1.67 Total: 15.40 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.07 Total: 9.96 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -5.02 Total: -134.50 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -85.71 0.36 -85.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007078500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.286 kcal (2) G-P(sol) polarization free energy of solvation -85.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds