Wall clock time and date at job start Tue Mar 31 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30846 * 125.89885 * 2 1 4 4 N 1.40083 * 108.20443 * 180.02562 * 3 2 1 5 5 C 1.46505 * 126.03414 * 180.02562 * 4 3 2 6 6 C 1.34943 * 107.92738 * 359.76086 * 4 3 2 7 7 C 1.35314 * 107.74786 * 0.38581 * 6 4 3 8 8 C 1.50701 * 126.04432 * 179.87566 * 7 6 4 9 9 C 1.50700 * 109.46669 * 264.69107 * 8 7 6 10 10 O 1.21273 * 120.00633 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99532 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99708 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.64648 * 323.31678 * 12 11 9 14 14 C 1.55159 * 110.71944 * 199.97465 * 12 11 9 15 15 C 1.55129 * 101.49043 * 205.97056 * 14 12 11 16 16 N 1.47427 * 104.71812 * 37.29735 * 15 14 12 17 17 C 1.36942 * 125.64885 * 155.81713 * 16 15 14 18 18 H 1.07999 * 119.99355 * 5.51161 * 17 16 15 19 19 C 1.38806 * 119.99977 * 185.51062 * 17 16 15 20 20 N 1.31625 * 120.00252 * 7.32181 * 19 17 16 21 21 Si 1.86805 * 119.99943 * 187.31999 * 19 17 16 22 22 H 1.48491 * 109.47035 * 84.99269 * 21 19 17 23 23 H 1.48501 * 109.47201 * 204.99305 * 21 19 17 24 24 H 1.48504 * 109.46702 * 324.99256 * 21 19 17 25 25 C 1.47024 * 108.70314 * 335.55586 * 16 15 14 26 26 H 1.08999 * 109.47438 * 269.97654 * 1 2 3 27 27 H 1.09005 * 109.47125 * 29.97850 * 1 2 3 28 28 H 1.09006 * 109.47202 * 149.97346 * 1 2 3 29 29 H 1.08997 * 109.46773 * 89.97864 * 5 4 3 30 30 H 1.09000 * 109.47055 * 209.97572 * 5 4 3 31 31 H 1.09003 * 109.46863 * 329.97865 * 5 4 3 32 32 H 1.08002 * 126.12678 * 180.24003 * 6 4 3 33 33 H 1.08996 * 109.47177 * 144.69002 * 8 7 6 34 34 H 1.08998 * 109.47166 * 24.68847 * 8 7 6 35 35 H 0.97000 * 120.00041 * 0.02562 * 11 9 8 36 36 H 1.08998 * 111.00641 * 324.21832 * 14 12 11 37 37 H 1.09007 * 111.00105 * 88.06585 * 14 12 11 38 38 H 1.09001 * 110.49644 * 278.46202 * 15 14 12 39 39 H 1.08994 * 110.34476 * 156.06124 * 15 14 12 40 40 H 0.97000 * 119.99633 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.88611 * 120.70572 * 25 16 15 42 42 H 1.09003 * 109.88062 * 241.86708 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6142 -0.7153 0.0044 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0004 9 6 1.5855 -3.0048 -1.4156 10 8 1.7523 -2.2304 -2.3340 11 7 1.1545 -4.2581 -1.6608 12 6 0.8872 -4.6847 -3.0366 13 1 0.4558 -3.8680 -3.6153 14 6 -0.0424 -5.9269 -3.0553 15 6 0.3481 -6.5848 -4.4048 16 7 1.8035 -6.3770 -4.5155 17 6 2.6652 -7.1431 -5.2544 18 1 2.2810 -7.9265 -5.8908 19 6 4.0322 -6.9126 -5.1853 20 7 4.5122 -6.0591 -4.3058 21 14 5.1908 -7.8139 -6.3407 22 1 5.2759 -7.0796 -7.6285 23 1 6.5403 -7.8932 -5.7259 24 1 4.6772 -9.1856 -6.5859 25 6 2.1756 -5.2073 -3.7062 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5143 29 1 5.0827 1.7154 1.0275 30 1 5.6093 0.9985 -0.5143 31 1 4.5562 2.4336 -0.5138 32 1 4.4891 -1.3484 0.0090 33 1 0.9474 -2.6502 0.5897 34 1 2.6330 -3.2000 0.4333 35 1 1.0207 -4.8773 -0.9263 36 1 0.1735 -6.5891 -2.2169 37 1 -1.0912 -5.6299 -3.0565 38 1 -0.1687 -6.0967 -5.2311 39 1 0.1172 -7.6499 -4.3879 40 1 5.4676 -5.8984 -4.2574 41 1 2.8979 -5.4986 -2.9436 42 1 2.6007 -4.4339 -4.3461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014753890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:15 Heat of formation + Delta-G solvation = 66.871290 kcal Electronic energy + Delta-G solvation = -23365.548234 eV Core-core repulsion = 19962.158871 eV Total energy + Delta-G solvation = -3403.389364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22814 -39.18303 -37.08720 -34.14125 -33.70890 -32.15484 -31.67323 -29.74262 -28.88710 -27.83168 -26.84188 -24.90066 -24.19029 -21.15108 -20.50201 -20.32510 -19.63373 -19.26079 -16.94264 -16.63251 -16.58917 -15.58207 -15.35686 -15.08229 -14.69739 -14.16227 -13.91331 -13.70623 -13.47944 -13.33852 -12.88722 -12.70914 -12.45492 -12.36061 -12.16330 -12.08601 -11.99923 -11.59339 -11.52333 -10.98454 -10.97286 -10.77342 -10.43373 -10.41494 -10.03328 -9.92906 -9.66200 -9.37720 -9.11432 -8.62524 -8.35821 -8.23870 -6.79280 -5.65555 -3.03048 1.95353 2.54906 2.76531 3.16566 3.42275 3.47167 3.48560 3.79804 4.46485 4.53310 4.83824 5.00926 5.02452 5.09714 5.25274 5.27486 5.31504 5.40663 5.48355 5.50051 5.58090 5.62087 5.68269 5.81139 5.87621 5.90536 6.07052 6.16142 6.19819 6.31333 6.54520 6.62674 6.75036 6.85172 7.00076 7.06468 7.54524 7.69137 7.79580 7.89638 8.05527 8.30898 8.78405 9.24040 9.85585 10.50921 11.42897 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003817 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.966588 B = 7333.633441 C = 8544.660703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.090 3.910 3 N -0.304 5.304 4 N -0.380 5.380 5 C 0.105 3.895 6 C 0.069 3.931 7 C -0.213 4.213 8 C -0.060 4.060 9 C 0.510 3.490 10 O -0.531 6.531 11 N -0.718 5.718 12 C 0.118 3.882 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.134 3.866 16 N -0.606 5.606 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.167 3.833 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.173 0.827 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.395 0.605 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.021 0.979 39 H 0.043 0.957 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 9.407 13.709 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 N -0.126 5.126 4 N -0.161 5.161 5 C -0.036 4.036 6 C -0.077 4.077 7 C -0.225 4.225 8 C -0.102 4.102 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.369 5.369 12 C 0.012 3.988 13 H 0.101 0.899 14 C -0.176 4.176 15 C 0.008 3.992 16 N -0.333 5.333 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.042 3.958 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.190 0.810 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.085 0.915 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.896 11.339 12.994 17.928 hybrid contribution 0.906 -1.638 -0.367 1.907 sum -3.991 9.701 12.628 16.416 Atomic orbital electron populations 1.20147 0.86996 1.03481 1.02365 1.22117 0.96674 0.90234 0.98619 1.77232 0.86407 1.22758 1.26251 1.48219 1.05456 1.04691 1.57728 1.21803 0.83844 0.95044 1.02934 1.22283 0.99236 0.84862 1.01276 1.19287 0.91914 0.94731 1.16522 1.19894 1.02923 0.92615 0.94720 1.20592 0.76929 0.81791 0.91195 1.90708 1.50619 1.53052 1.46256 1.45967 1.68504 1.13220 1.09195 1.22322 0.98313 0.95918 0.82200 0.89929 1.23035 0.97937 0.96840 0.99782 1.21590 0.86773 0.97684 0.93194 1.44444 1.01178 1.31617 1.56015 1.19040 0.87017 1.11850 1.17963 0.90414 1.24817 0.96681 0.99711 0.99202 1.69972 1.12027 1.38349 1.36084 0.86157 0.80343 0.79026 0.80349 1.21578 1.21759 1.20712 1.21534 0.91232 0.88479 0.94583 0.90747 0.91026 0.90528 0.91059 0.89479 0.89492 0.81015 0.88629 0.88489 0.77171 0.91208 0.91754 0.96138 0.93907 0.93843 0.91500 0.95074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.21 36.00 0.37 -0.44 16 2 C 0.09 1.31 7.22 -82.40 -0.59 0.72 16 3 N -0.30 -4.69 12.58 33.67 0.42 -4.27 16 4 N -0.38 -5.08 4.01 -68.16 -0.27 -5.36 16 5 C 0.11 0.90 11.47 59.85 0.69 1.59 16 6 C 0.07 0.93 11.40 -17.23 -0.20 0.73 16 7 C -0.21 -3.01 4.59 -105.05 -0.48 -3.49 16 8 C -0.06 -0.73 5.82 -29.03 -0.17 -0.90 16 9 C 0.51 8.49 7.82 -10.98 -0.09 8.41 16 10 O -0.53 -11.47 15.76 5.56 0.09 -11.38 16 11 N -0.72 -11.36 5.13 -52.03 -0.27 -11.63 16 12 C 0.12 2.27 3.23 -66.09 -0.21 2.05 16 13 H 0.08 1.70 7.69 -51.93 -0.40 1.30 16 14 C -0.14 -2.29 6.71 -24.46 -0.16 -2.45 16 15 C 0.13 2.75 7.24 -2.41 -0.02 2.74 16 16 N -0.61 -15.76 3.39 -169.93 -0.58 -16.34 16 17 C -0.23 -6.53 10.26 -15.06 -0.15 -6.69 16 18 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 19 C -0.01 -0.22 5.45 -17.43 -0.09 -0.31 16 20 N -0.92 -27.58 10.46 55.49 0.58 -27.00 16 21 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.17 4.22 5.19 -3.06 -0.02 4.20 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.86 7.96 -51.93 -0.41 0.44 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 4.91 8.52 -40.82 -0.35 4.57 16 36 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 37 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.85 6.77 -51.93 -0.35 1.50 16 42 H 0.03 0.91 7.98 -51.93 -0.41 0.50 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -37.36 351.34 -7.43 -44.79 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.54 Total: 2.32 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.13 Total: 6.15 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -0.11 Total: -64.59 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.36 -7.43 -44.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.662 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds