Wall clock time and date at job start Tue Mar 31 2020 03:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30846 * 125.89885 * 2 1 4 4 N 1.40083 * 108.20443 * 180.02562 * 3 2 1 5 5 C 1.46505 * 126.03414 * 180.02562 * 4 3 2 6 6 C 1.34943 * 107.92738 * 359.76086 * 4 3 2 7 7 C 1.35314 * 107.74786 * 0.38581 * 6 4 3 8 8 C 1.50701 * 126.04432 * 179.87566 * 7 6 4 9 9 C 1.50700 * 109.46669 * 264.69107 * 8 7 6 10 10 O 1.21273 * 120.00633 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99532 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99708 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.64648 * 323.31678 * 12 11 9 14 14 C 1.55159 * 110.71944 * 199.97465 * 12 11 9 15 15 C 1.55129 * 101.49043 * 205.97056 * 14 12 11 16 16 N 1.47427 * 104.71812 * 37.29735 * 15 14 12 17 17 C 1.36942 * 125.64885 * 155.81713 * 16 15 14 18 18 H 1.07999 * 119.99355 * 5.51161 * 17 16 15 19 19 C 1.38806 * 119.99977 * 185.51062 * 17 16 15 20 20 N 1.31625 * 120.00252 * 7.32181 * 19 17 16 21 21 Si 1.86805 * 119.99943 * 187.31999 * 19 17 16 22 22 H 1.48491 * 109.47035 * 84.99269 * 21 19 17 23 23 H 1.48501 * 109.47201 * 204.99305 * 21 19 17 24 24 H 1.48504 * 109.46702 * 324.99256 * 21 19 17 25 25 C 1.47024 * 108.70314 * 335.55586 * 16 15 14 26 26 H 1.08999 * 109.47438 * 269.97654 * 1 2 3 27 27 H 1.09005 * 109.47125 * 29.97850 * 1 2 3 28 28 H 1.09006 * 109.47202 * 149.97346 * 1 2 3 29 29 H 1.08997 * 109.46773 * 89.97864 * 5 4 3 30 30 H 1.09000 * 109.47055 * 209.97572 * 5 4 3 31 31 H 1.09003 * 109.46863 * 329.97865 * 5 4 3 32 32 H 1.08002 * 126.12678 * 180.24003 * 6 4 3 33 33 H 1.08996 * 109.47177 * 144.69002 * 8 7 6 34 34 H 1.08998 * 109.47166 * 24.68847 * 8 7 6 35 35 H 0.97000 * 120.00041 * 0.02562 * 11 9 8 36 36 H 1.08998 * 111.00641 * 324.21832 * 14 12 11 37 37 H 1.09007 * 111.00105 * 88.06585 * 14 12 11 38 38 H 1.09001 * 110.49644 * 278.46202 * 15 14 12 39 39 H 1.08994 * 110.34476 * 156.06124 * 15 14 12 40 40 H 0.97000 * 119.99633 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.88611 * 120.70572 * 25 16 15 42 42 H 1.09003 * 109.88062 * 241.86708 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 6 3.6142 -0.7153 0.0044 7 6 2.3272 -1.1330 -0.0006 8 6 1.8599 -2.5657 -0.0004 9 6 1.5855 -3.0048 -1.4156 10 8 1.7523 -2.2304 -2.3340 11 7 1.1545 -4.2581 -1.6608 12 6 0.8872 -4.6847 -3.0366 13 1 0.4558 -3.8680 -3.6153 14 6 -0.0424 -5.9269 -3.0553 15 6 0.3481 -6.5848 -4.4048 16 7 1.8035 -6.3770 -4.5155 17 6 2.6652 -7.1431 -5.2544 18 1 2.2810 -7.9265 -5.8908 19 6 4.0322 -6.9126 -5.1853 20 7 4.5122 -6.0591 -4.3058 21 14 5.1908 -7.8139 -6.3407 22 1 5.2759 -7.0796 -7.6285 23 1 6.5403 -7.8932 -5.7259 24 1 4.6772 -9.1856 -6.5859 25 6 2.1756 -5.2073 -3.7062 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5143 29 1 5.0827 1.7154 1.0275 30 1 5.6093 0.9985 -0.5143 31 1 4.5562 2.4336 -0.5138 32 1 4.4891 -1.3484 0.0090 33 1 0.9474 -2.6502 0.5897 34 1 2.6330 -3.2000 0.4333 35 1 1.0207 -4.8773 -0.9263 36 1 0.1735 -6.5891 -2.2169 37 1 -1.0912 -5.6299 -3.0565 38 1 -0.1687 -6.0967 -5.2311 39 1 0.1172 -7.6499 -4.3879 40 1 5.4676 -5.8984 -4.2574 41 1 2.8979 -5.4986 -2.9436 42 1 2.6007 -4.4339 -4.3461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014753890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:14 Heat of formation + Delta-G solvation = 39.631070 kcal Electronic energy + Delta-G solvation = -23366.729459 eV Core-core repulsion = 19962.158871 eV Total energy + Delta-G solvation = -3404.570588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22446 -40.60615 -38.76815 -35.43148 -35.04781 -33.89734 -32.87320 -30.79647 -30.44700 -29.25680 -28.25905 -26.42542 -25.53019 -22.53669 -22.04722 -21.56712 -21.17366 -20.33231 -18.90001 -17.98070 -17.64843 -16.98647 -16.90291 -16.30488 -16.06464 -15.79071 -15.27197 -14.99786 -14.44692 -14.38434 -14.27561 -14.10289 -13.91930 -13.70468 -13.30035 -13.24209 -13.02267 -12.96639 -12.90084 -12.71147 -12.59097 -12.52015 -12.18850 -11.89643 -11.83929 -11.48367 -11.43385 -10.80398 -10.74704 -10.12379 -9.88616 -9.24305 -8.90022 -7.82660 -5.22789 0.95294 1.43983 1.47667 1.55055 1.66919 1.73625 1.86930 2.45768 2.56105 3.33620 3.60317 3.71989 3.86974 3.92538 4.07453 4.15618 4.22846 4.32012 4.40177 4.43132 4.44607 4.52622 4.64574 4.68848 4.73154 4.80080 4.83379 5.01588 5.03880 5.08999 5.14474 5.19762 5.33368 5.42719 5.47832 5.62481 5.79116 5.88644 6.16517 6.20610 6.78378 6.80407 7.07805 7.51905 7.77532 8.41278 9.24239 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.003817 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.966588 B = 7333.633441 C = 8544.660703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.074 3.926 3 N -0.339 5.339 4 N -0.385 5.385 5 C 0.096 3.904 6 C 0.059 3.941 7 C -0.236 4.236 8 C -0.047 4.047 9 C 0.507 3.493 10 O -0.587 6.587 11 N -0.705 5.705 12 C 0.132 3.868 13 H 0.067 0.933 14 C -0.113 4.113 15 C 0.123 3.877 16 N -0.629 5.629 17 C -0.244 4.244 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.978 3.022 22 H -0.291 1.291 23 H -0.294 1.294 24 H -0.263 1.263 25 C 0.182 3.818 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.194 0.806 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.025 0.975 39 H 0.056 0.944 40 H 0.244 0.756 41 H 0.037 0.963 42 H -0.031 1.031 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 8.164 15.170 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 N -0.163 5.163 4 N -0.167 5.167 5 C -0.044 4.044 6 C -0.087 4.087 7 C -0.247 4.247 8 C -0.088 4.088 9 C 0.295 3.705 10 O -0.466 6.466 11 N -0.357 5.357 12 C 0.025 3.975 13 H 0.085 0.915 14 C -0.152 4.152 15 C -0.002 4.002 16 N -0.355 5.355 17 C -0.373 4.373 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.187 1.187 25 C 0.056 3.944 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.211 0.789 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.055 0.945 42 H -0.013 1.013 Dipole moment (debyes) X Y Z Total from point charges -6.154 10.066 14.491 18.686 hybrid contribution 1.295 -1.216 -0.873 1.979 sum -4.859 8.850 13.617 16.952 Atomic orbital electron populations 1.20229 0.85288 1.03255 1.03994 1.22656 0.98071 0.90286 0.98160 1.77152 0.87632 1.23852 1.27670 1.48614 1.05780 1.05288 1.56998 1.22131 0.82897 0.94731 1.04667 1.22776 1.00066 0.85321 1.00576 1.19625 0.92262 0.95580 1.17272 1.19932 1.05374 0.91793 0.91691 1.21476 0.75285 0.81188 0.92594 1.90692 1.52894 1.54615 1.48435 1.45801 1.67969 1.13617 1.08318 1.21885 0.95624 0.96506 0.83493 0.91461 1.22965 0.99402 0.94814 0.97987 1.21882 0.83617 0.99062 0.95665 1.44774 1.03523 1.31437 1.55804 1.19501 0.87826 1.11932 1.18085 0.89590 1.25698 0.98452 1.00981 1.00968 1.70211 1.11655 1.40098 1.37829 0.85107 0.77899 0.78574 0.77853 1.21800 1.22031 1.18745 1.21209 0.93559 0.86816 0.92860 0.88088 0.91425 0.90506 0.88872 0.87785 0.89458 0.78949 0.84928 0.86127 0.74711 0.89310 0.87494 0.95678 0.92532 0.94659 0.94498 1.01292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.21 71.23 0.73 -0.76 16 2 C 0.07 2.12 7.22 43.10 0.31 2.43 16 3 N -0.34 -10.51 12.58 -47.38 -0.60 -11.11 16 4 N -0.39 -10.20 4.01 -369.56 -1.48 -11.68 16 5 C 0.10 1.57 11.47 127.77 1.47 3.04 16 6 C 0.06 1.55 11.40 83.54 0.95 2.50 16 7 C -0.24 -6.43 4.59 -20.14 -0.09 -6.53 16 8 C -0.05 -1.05 5.82 29.10 0.17 -0.88 16 9 C 0.51 16.48 7.82 87.66 0.69 17.17 16 10 O -0.59 -25.99 15.76 -3.01 -0.05 -26.04 16 11 N -0.70 -21.19 5.13 -436.92 -2.24 -23.43 16 12 C 0.13 4.99 3.23 46.18 0.15 5.14 16 13 H 0.07 2.79 7.69 -2.39 -0.02 2.77 16 14 C -0.11 -3.41 6.71 32.06 0.22 -3.19 16 15 C 0.12 4.82 7.24 86.93 0.63 5.45 16 16 N -0.63 -33.00 3.39 -691.54 -2.35 -35.35 16 17 C -0.24 -13.99 10.26 84.03 0.86 -13.13 16 18 H 0.09 4.64 7.84 -2.91 -0.02 4.61 16 19 C -0.07 -3.98 5.45 84.86 0.46 -3.51 16 20 N -0.95 -59.16 10.46 21.65 0.23 -58.93 16 21 Si 0.98 46.74 29.56 68.60 2.03 48.77 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.18 9.48 5.19 86.73 0.45 9.93 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.08 1.62 7.96 -2.38 -0.02 1.60 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.13 1.95 8.09 -2.39 -0.02 1.93 16 34 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.42 9.03 8.52 -92.71 -0.79 8.24 16 36 H 0.09 2.39 8.00 -2.39 -0.02 2.37 16 37 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.04 2.12 6.77 -2.39 -0.02 2.10 16 42 H -0.03 -1.97 7.98 -2.39 -0.02 -1.99 16 Total: -1.00 -86.42 351.34 2.76 -83.66 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.23 Total: 16.44 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.99 Total: 17.66 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -6.44 Total: -140.50 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -86.42 2.76 -83.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.293 kcal (2) G-P(sol) polarization free energy of solvation -86.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds