Wall clock time and date at job start Tue Mar 31 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39878 * 125.90237 * 2 1 4 4 C 1.35308 * 107.92365 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.12725 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46988 * 85.02386 * 5 4 3 7 7 O 1.21288 * 119.99912 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64727 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27511 * 178.92140 * 9 8 6 11 11 C 1.55164 * 102.93878 * 337.80517 * 10 9 8 12 12 H 1.08997 * 111.00137 * 277.38878 * 11 10 9 13 13 N 1.46506 * 111.00115 * 153.57413 * 11 10 9 14 14 C 1.36929 * 119.99807 * 86.45508 * 13 11 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 11 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99660 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 89.99909 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99659 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99370 * 18 16 14 22 22 C 1.47425 * 125.65466 * 179.97438 * 8 6 5 23 23 N 1.34944 * 107.74609 * 0.22501 * 4 3 2 24 24 C 1.46499 * 126.03913 * 179.77253 * 23 4 3 25 25 N 1.30842 * 125.90004 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47203 * 89.99911 * 1 2 3 27 27 H 1.08995 * 109.47685 * 210.00104 * 1 2 3 28 28 H 1.09005 * 109.47366 * 330.00029 * 1 2 3 29 29 H 1.08000 * 126.03453 * 359.94578 * 3 2 1 30 30 H 1.08994 * 109.47003 * 325.02489 * 5 4 3 31 31 H 1.09002 * 109.46899 * 205.01840 * 5 4 3 32 32 H 1.09003 * 109.88417 * 59.50502 * 9 8 6 33 33 H 1.09000 * 110.01415 * 298.40805 * 9 8 6 34 34 H 1.08994 * 110.72159 * 219.44700 * 10 9 8 35 35 H 1.08994 * 110.87362 * 96.23841 * 10 9 8 36 36 H 0.96999 * 120.00076 * 266.45571 * 13 11 10 37 37 H 0.97000 * 119.99517 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.36918 * 85.30620 * 22 8 6 39 39 H 1.09005 * 110.36380 * 322.99157 * 22 8 6 40 40 H 1.09001 * 109.47440 * 89.99960 * 24 23 4 41 41 H 1.09003 * 109.47275 * 210.00116 * 24 23 4 42 42 H 1.09003 * 109.47017 * 330.00399 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 6 5.1694 1.9943 1.4155 7 8 4.4835 1.5979 2.3340 8 7 6.2299 2.7890 1.6606 9 6 7.1405 3.3396 0.6461 10 6 8.1804 4.2070 1.3862 11 6 7.4602 4.5538 2.7161 12 1 6.7866 5.4008 2.5862 13 7 8.4279 4.8150 3.7847 14 6 8.9481 6.0714 3.9452 15 1 8.6417 6.8709 3.2869 16 6 9.8645 6.3190 4.9580 17 7 10.3642 7.5268 5.1125 18 14 10.3886 4.9379 6.1014 19 1 11.5760 4.2496 5.5344 20 1 10.7312 5.5006 7.4323 21 1 9.2753 3.9660 6.2465 22 6 6.6684 3.2512 2.9900 23 7 3.6087 -0.6340 -0.0041 24 6 4.7898 -1.5007 -0.0100 25 7 2.2741 -1.0599 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9923 2.1598 -0.0008 30 1 4.6358 2.4937 -0.5895 31 1 5.6754 1.0572 -0.4338 32 1 6.5813 3.9532 -0.0602 33 1 7.6428 2.5298 0.1168 34 1 8.4011 5.1118 0.8199 35 1 9.0923 3.6415 1.5776 36 1 8.7000 4.0978 4.3784 37 1 11.0048 7.6997 5.8200 38 1 7.3132 2.5066 3.4569 39 1 5.8057 3.4576 3.6235 40 1 5.0853 -1.7193 1.0162 41 1 4.5550 -2.4314 -0.5265 42 1 5.6081 -0.9963 -0.5240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019140042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:27 Heat of formation + Delta-G solvation = 61.036760 kcal Electronic energy + Delta-G solvation = -22990.404227 eV Core-core repulsion = 19586.761859 eV Total energy + Delta-G solvation = -3403.642368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48751 -39.84674 -37.48990 -34.37315 -34.25707 -32.47874 -31.59430 -29.99317 -29.72747 -28.66941 -27.22583 -25.54695 -23.66289 -22.76516 -20.74013 -20.28567 -19.90199 -18.88927 -17.80954 -17.23824 -16.81038 -16.19694 -15.68956 -15.25005 -14.77086 -14.32892 -14.09272 -13.92323 -13.72877 -13.69054 -13.40310 -13.12422 -12.80719 -12.65050 -12.57963 -12.49360 -12.23866 -12.14544 -11.98267 -11.90127 -11.49128 -10.96618 -10.79185 -10.65738 -10.55446 -10.14204 -9.96534 -9.69503 -9.18721 -9.04426 -8.61059 -8.57445 -7.41898 -5.87325 -3.25367 1.66889 2.33723 2.56027 2.62249 3.05177 3.31322 3.34355 3.40129 4.20497 4.30623 4.48242 4.50027 4.63398 4.81672 4.82434 4.92331 5.07029 5.11883 5.12761 5.16478 5.21199 5.33003 5.43352 5.45146 5.52880 5.56446 5.70841 5.73571 5.77801 5.79809 6.03558 6.05746 6.17911 6.34420 6.45496 6.58619 6.71476 6.85560 7.51301 7.62078 7.86028 8.11096 8.30947 9.07325 9.79714 9.97523 11.30299 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.002887 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.239514 B = 9695.182916 C = 9725.520108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.071 3.929 3 C -0.254 4.254 4 C 0.107 3.893 5 C -0.075 4.075 6 C 0.528 3.472 7 O -0.532 6.532 8 N -0.613 5.613 9 C 0.098 3.902 10 C -0.154 4.154 11 C 0.177 3.823 12 H 0.072 0.928 13 N -0.739 5.739 14 C -0.250 4.250 15 H 0.092 0.908 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.097 3.903 23 N -0.368 5.368 24 C 0.100 3.900 25 N -0.296 5.296 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -14.865 -15.137 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 C -0.283 4.283 4 C -0.021 4.021 5 C -0.117 4.117 6 C 0.315 3.685 7 O -0.408 6.408 8 N -0.348 5.348 9 C -0.025 4.025 10 C -0.195 4.195 11 C 0.065 3.935 12 H 0.090 0.910 13 N -0.381 5.381 14 C -0.379 4.379 15 H 0.110 0.890 16 C -0.187 4.187 17 N -0.576 5.576 18 Si 0.713 3.287 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.026 4.026 23 N -0.150 5.150 24 C -0.042 4.042 25 N -0.120 5.120 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.548 -16.235 -14.647 25.210 hybrid contribution 0.787 -0.002 0.853 1.160 sum -11.762 -16.237 -13.794 24.336 Atomic orbital electron populations 1.20155 0.86716 1.03317 1.02723 1.22255 0.96879 0.90730 0.99591 1.21038 0.90785 0.99801 1.16674 1.20236 0.95956 0.84277 1.01631 1.20240 0.95151 1.00110 0.96175 1.19892 0.79564 0.78499 0.90565 1.90763 1.49560 1.54291 1.46174 1.48421 1.27926 1.48886 1.09532 1.22163 0.91746 0.97239 0.91341 1.23371 0.97720 0.99370 0.99028 1.21263 0.90431 0.93782 0.87979 0.90977 1.42607 1.50325 1.10032 1.35132 1.19016 1.19266 0.86293 1.13372 0.88976 1.24677 0.99218 0.96182 0.98663 1.69695 1.33737 1.19378 1.34804 0.86572 0.78616 0.82262 0.81218 1.20979 1.21582 1.20212 1.22542 0.99286 0.96766 0.83987 1.48274 1.05521 1.03962 1.57242 1.21834 0.83916 0.94830 1.03579 1.77273 0.86075 1.22649 1.25968 0.90661 0.91065 0.90398 0.83682 0.86155 0.87923 0.91434 0.91872 0.90107 0.90558 0.80321 0.92877 0.91618 0.90274 0.90676 0.89214 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.00 0.38 -0.23 16 2 C 0.07 0.89 7.22 -82.40 -0.59 0.30 16 3 C -0.25 -3.16 10.65 -40.01 -0.43 -3.59 16 4 C 0.11 1.30 5.42 -82.27 -0.45 0.85 16 5 C -0.08 -0.72 5.18 -29.03 -0.15 -0.87 16 6 C 0.53 7.25 7.84 -10.99 -0.09 7.16 16 7 O -0.53 -9.66 16.29 5.55 0.09 -9.57 16 8 N -0.61 -8.18 3.33 -170.53 -0.57 -8.75 16 9 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 10 C -0.15 -2.18 6.65 -24.89 -0.17 -2.35 16 11 C 0.18 3.09 3.68 -65.79 -0.24 2.85 16 12 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 13 N -0.74 -16.33 5.08 -51.36 -0.26 -16.59 16 14 C -0.25 -6.66 10.47 -15.06 -0.16 -6.82 16 15 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 16 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 17 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 18 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 22 C 0.10 1.55 6.53 -2.54 -0.02 1.53 16 23 N -0.37 -4.58 4.01 -63.88 -0.26 -4.84 16 24 C 0.10 0.84 11.27 59.85 0.67 1.51 16 25 N -0.30 -4.15 12.58 33.67 0.42 -3.72 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.71 6.94 -51.93 -0.36 0.35 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.36 7.97 5.57 -40.82 -0.23 7.74 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 1.06 8.00 -51.93 -0.42 0.64 16 39 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.48 6.97 -51.93 -0.36 0.12 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -35.24 350.55 -7.02 -42.27 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.45 Total: 5.21 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.35 Total: 1.54 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.11 Total: -61.36 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.24 -7.02 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019140042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.304 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds