Wall clock time and date at job start Tue Mar 31 2020 03:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39878 * 125.90237 * 2 1 4 4 C 1.35308 * 107.92365 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.12725 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46988 * 85.02386 * 5 4 3 7 7 O 1.21288 * 119.99912 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00075 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64727 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27511 * 178.92140 * 9 8 6 11 11 C 1.55164 * 102.93878 * 337.80517 * 10 9 8 12 12 H 1.08997 * 111.00137 * 277.38878 * 11 10 9 13 13 N 1.46506 * 111.00115 * 153.57413 * 11 10 9 14 14 C 1.36929 * 119.99807 * 86.45508 * 13 11 10 15 15 H 1.08004 * 120.00341 * 0.27647 * 14 13 11 16 16 C 1.38815 * 120.00031 * 179.97438 * 14 13 11 17 17 N 1.31619 * 119.99884 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99660 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 89.99909 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99659 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99370 * 18 16 14 22 22 C 1.47425 * 125.65466 * 179.97438 * 8 6 5 23 23 N 1.34944 * 107.74609 * 0.22501 * 4 3 2 24 24 C 1.46499 * 126.03913 * 179.77253 * 23 4 3 25 25 N 1.30842 * 125.90004 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47203 * 89.99911 * 1 2 3 27 27 H 1.08995 * 109.47685 * 210.00104 * 1 2 3 28 28 H 1.09005 * 109.47366 * 330.00029 * 1 2 3 29 29 H 1.08000 * 126.03453 * 359.94578 * 3 2 1 30 30 H 1.08994 * 109.47003 * 325.02489 * 5 4 3 31 31 H 1.09002 * 109.46899 * 205.01840 * 5 4 3 32 32 H 1.09003 * 109.88417 * 59.50502 * 9 8 6 33 33 H 1.09000 * 110.01415 * 298.40805 * 9 8 6 34 34 H 1.08994 * 110.72159 * 219.44700 * 10 9 8 35 35 H 1.08994 * 110.87362 * 96.23841 * 10 9 8 36 36 H 0.96999 * 120.00076 * 266.45571 * 13 11 10 37 37 H 0.97000 * 119.99517 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.36918 * 85.30620 * 22 8 6 39 39 H 1.09005 * 110.36380 * 322.99157 * 22 8 6 40 40 H 1.09001 * 109.47440 * 89.99960 * 24 23 4 41 41 H 1.09003 * 109.47275 * 210.00116 * 24 23 4 42 42 H 1.09003 * 109.47017 * 330.00399 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 6 5.1694 1.9943 1.4155 7 8 4.4835 1.5979 2.3340 8 7 6.2299 2.7890 1.6606 9 6 7.1405 3.3396 0.6461 10 6 8.1804 4.2070 1.3862 11 6 7.4602 4.5538 2.7161 12 1 6.7866 5.4008 2.5862 13 7 8.4279 4.8150 3.7847 14 6 8.9481 6.0714 3.9452 15 1 8.6417 6.8709 3.2869 16 6 9.8645 6.3190 4.9580 17 7 10.3642 7.5268 5.1125 18 14 10.3886 4.9379 6.1014 19 1 11.5760 4.2496 5.5344 20 1 10.7312 5.5006 7.4323 21 1 9.2753 3.9660 6.2465 22 6 6.6684 3.2512 2.9900 23 7 3.6087 -0.6340 -0.0041 24 6 4.7898 -1.5007 -0.0100 25 7 2.2741 -1.0599 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9923 2.1598 -0.0008 30 1 4.6358 2.4937 -0.5895 31 1 5.6754 1.0572 -0.4338 32 1 6.5813 3.9532 -0.0602 33 1 7.6428 2.5298 0.1168 34 1 8.4011 5.1118 0.8199 35 1 9.0923 3.6415 1.5776 36 1 8.7000 4.0978 4.3784 37 1 11.0048 7.6997 5.8200 38 1 7.3132 2.5066 3.4569 39 1 5.8057 3.4576 3.6235 40 1 5.0853 -1.7193 1.0162 41 1 4.5550 -2.4314 -0.5265 42 1 5.6081 -0.9963 -0.5240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019140042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:26 Heat of formation + Delta-G solvation = 35.962292 kcal Electronic energy + Delta-G solvation = -22991.491537 eV Core-core repulsion = 19586.761859 eV Total energy + Delta-G solvation = -3404.729678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34451 -40.95194 -38.75120 -36.03972 -35.06881 -33.70565 -33.08697 -31.31864 -30.45436 -29.82975 -28.31549 -26.27507 -25.31523 -24.09898 -21.77879 -21.56988 -20.83768 -19.82926 -19.70990 -18.28479 -17.74386 -17.36545 -16.63556 -16.43150 -16.11240 -15.77482 -15.29646 -14.98041 -14.77972 -14.62172 -14.45134 -14.35587 -13.90714 -13.70214 -13.61130 -13.45401 -13.22937 -13.18297 -13.11810 -12.90449 -12.74982 -12.64254 -12.26230 -12.19038 -11.81840 -11.58880 -11.52195 -11.09461 -10.98609 -10.06448 -9.69984 -9.43693 -9.34775 -8.02923 -5.37720 0.78644 1.39068 1.41124 1.48048 1.53211 1.59973 1.73113 2.04962 2.47797 3.26567 3.39339 3.52052 3.55889 3.61852 3.84883 3.97157 4.06532 4.19128 4.21546 4.31347 4.36286 4.44074 4.45747 4.49772 4.62478 4.71449 4.72662 4.82506 4.86702 4.92873 4.99074 5.06465 5.17382 5.25803 5.28828 5.42846 5.76440 5.76951 6.08293 6.20485 6.49519 6.75118 7.04796 7.07671 7.79925 7.97866 9.17962 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.002887 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.239514 B = 9695.182916 C = 9725.520108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.057 3.943 3 C -0.277 4.277 4 C 0.099 3.901 5 C -0.064 4.064 6 C 0.528 3.472 7 O -0.584 6.584 8 N -0.610 5.610 9 C 0.104 3.896 10 C -0.146 4.146 11 C 0.166 3.834 12 H 0.060 0.940 13 N -0.745 5.745 14 C -0.228 4.228 15 H 0.064 0.936 16 C -0.060 4.060 17 N -0.981 5.981 18 Si 0.950 3.050 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.256 1.256 22 C 0.106 3.894 23 N -0.376 5.376 24 C 0.090 3.910 25 N -0.334 5.334 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -16.606 -17.205 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C -0.306 4.306 4 C -0.030 4.030 5 C -0.104 4.104 6 C 0.317 3.683 7 O -0.464 6.464 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.187 4.187 11 C 0.057 3.943 12 H 0.078 0.922 13 N -0.388 5.388 14 C -0.358 4.358 15 H 0.082 0.918 16 C -0.252 4.252 17 N -0.631 5.631 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.226 1.226 21 H -0.180 1.180 22 C -0.018 4.018 23 N -0.158 5.158 24 C -0.050 4.050 25 N -0.158 5.158 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.542 -18.022 -16.784 27.637 hybrid contribution 0.705 0.576 1.434 1.699 sum -11.837 -17.446 -15.350 26.079 Atomic orbital electron populations 1.20266 0.84701 1.03807 1.03994 1.22855 0.98464 0.90608 0.98866 1.21381 0.91402 1.00409 1.17403 1.20667 0.96843 0.84578 1.00870 1.20337 0.95340 1.01333 0.93434 1.20590 0.78503 0.77410 0.91766 1.90752 1.51219 1.56224 1.48192 1.48448 1.28338 1.48741 1.08865 1.22326 0.90727 0.98247 0.90473 1.23191 0.98296 1.00181 0.96990 1.21433 0.90049 0.94297 0.88546 0.92189 1.42582 1.51118 1.08375 1.36696 1.18973 1.17851 0.87311 1.11704 0.91834 1.25443 1.00226 0.98571 1.00960 1.69866 1.35325 1.21864 1.36056 0.85485 0.78869 0.79529 0.78338 1.20137 1.22637 1.18049 1.22221 0.98224 0.95826 0.85554 1.48618 1.05777 1.04628 1.56793 1.22141 0.83668 0.95474 1.03744 1.77201 0.87285 1.23836 1.27480 0.88927 0.91151 0.89276 0.82658 0.83005 0.84237 0.88389 0.88069 0.90073 0.91015 0.80059 0.93332 0.91679 0.92164 0.91446 0.88231 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.45 71.23 0.74 -0.38 16 2 C 0.06 1.39 7.22 43.10 0.31 1.70 16 3 C -0.28 -6.51 10.65 21.99 0.23 -6.27 16 4 C 0.10 2.17 5.42 41.41 0.22 2.40 16 5 C -0.06 -0.95 5.18 29.10 0.15 -0.80 16 6 C 0.53 12.97 7.84 87.66 0.69 13.66 16 7 O -0.58 -20.63 16.29 -3.05 -0.05 -20.68 16 8 N -0.61 -14.32 3.33 -811.82 -2.70 -17.02 16 9 C 0.10 1.72 6.49 86.73 0.56 2.29 16 10 C -0.15 -3.73 6.65 31.79 0.21 -3.52 16 11 C 0.17 5.62 3.68 46.38 0.17 5.79 16 12 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 13 N -0.74 -32.40 5.08 -316.40 -1.61 -34.01 16 14 C -0.23 -12.26 10.47 84.04 0.88 -11.38 16 15 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 16 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 17 N -0.98 -61.17 13.97 21.65 0.30 -60.87 16 18 Si 0.95 44.20 27.74 68.60 1.90 46.10 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 21 H -0.26 -10.86 6.52 99.48 0.65 -10.21 16 22 C 0.11 3.22 6.53 86.85 0.57 3.79 16 23 N -0.38 -8.71 4.01 -356.03 -1.43 -10.14 16 24 C 0.09 1.30 11.27 127.77 1.44 2.74 16 25 N -0.33 -9.14 12.58 -47.38 -0.60 -9.74 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.14 1.06 6.94 -2.39 -0.02 1.05 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.37 15.51 5.57 -92.71 -0.52 14.99 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.06 1.99 8.00 -2.39 -0.02 1.98 16 39 H 0.06 2.05 8.04 -2.38 -0.02 2.03 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 0.85 6.97 -2.39 -0.02 0.83 16 Total: -1.00 -80.18 350.55 2.92 -77.26 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.44 Total: 22.05 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.65 Total: 7.04 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -6.03 Total: -131.78 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.10 kcal Total: -80.18 2.92 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019140042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.222 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds