Wall clock time and date at job start Tue Mar 31 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35560 * 125.82775 * 2 1 4 4 N 1.35406 * 107.16108 * 180.15706 * 3 2 1 5 5 H 0.97001 * 126.43492 * 179.84287 * 4 3 2 6 6 C 1.36668 * 107.12104 * 359.58257 * 4 3 2 7 7 C 1.47409 * 125.86468 * 180.28427 * 6 4 3 8 8 O 1.21603 * 119.99922 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99684 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99336 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46738 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49572 * 55.00261 * 11 10 9 13 13 C 1.53042 * 109.49697 * 175.06334 * 11 10 9 14 14 C 1.53043 * 109.53647 * 181.31950 * 13 11 10 15 15 C 1.53191 * 109.31097 * 298.63208 * 14 13 11 16 16 N 1.46925 * 108.77425 * 54.64173 * 15 14 13 17 17 C 1.36939 * 120.63659 * 126.38837 * 16 15 14 18 18 H 1.07994 * 120.00631 * 207.67857 * 17 16 15 19 19 C 1.38816 * 119.99357 * 27.67195 * 17 16 15 20 20 N 1.31613 * 120.00514 * 17.37588 * 19 17 16 21 21 Si 1.86806 * 119.99543 * 197.37373 * 19 17 16 22 22 H 1.48498 * 109.47266 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47052 * 120.00252 * 21 19 17 24 24 H 1.48501 * 109.46851 * 240.00277 * 21 19 17 25 25 C 1.46937 * 118.76229 * 306.40560 * 16 15 14 26 26 N 1.31622 * 108.27058 * 0.26489 * 6 4 3 27 27 H 1.08991 * 109.47376 * 270.33733 * 1 2 3 28 28 H 1.09005 * 109.46871 * 30.33970 * 1 2 3 29 29 H 1.09000 * 109.47159 * 150.33227 * 1 2 3 30 30 H 1.08008 * 126.42067 * 0.03729 * 3 2 1 31 31 H 0.96992 * 120.00127 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47319 * 299.99773 * 10 9 7 33 33 H 1.08997 * 109.46927 * 60.00761 * 10 9 7 34 34 H 1.08998 * 109.45925 * 301.33946 * 13 11 10 35 35 H 1.09000 * 109.45506 * 61.31383 * 13 11 10 36 36 H 1.08999 * 109.50173 * 58.58889 * 14 13 11 37 37 H 1.09001 * 109.49687 * 178.68546 * 14 13 11 38 38 H 1.09000 * 109.58611 * 174.42174 * 15 14 13 39 39 H 1.08999 * 109.59314 * 294.70801 * 15 14 13 40 40 H 0.96994 * 120.00221 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.56313 * 293.78857 * 25 16 15 42 42 H 1.09010 * 109.61164 * 173.35660 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 -0.0035 5 1 4.3789 1.2207 -0.0066 6 6 3.5465 -0.7004 0.0039 7 6 4.7174 -1.5959 0.0092 8 8 5.8401 -1.1288 0.0076 9 7 4.5435 -2.9324 0.0169 10 6 5.7073 -3.8223 0.0228 11 6 5.2361 -5.2780 0.0304 12 1 4.5641 -5.4472 -0.8110 13 6 6.4463 -6.2072 -0.0876 14 6 5.9735 -7.6626 -0.1133 15 6 5.2448 -7.9816 1.1959 16 7 4.1681 -7.0007 1.3890 17 6 2.8807 -7.4121 1.6094 18 1 2.0545 -6.7815 1.3158 19 6 2.6376 -8.6397 2.2101 20 7 3.5980 -9.2509 2.8705 21 14 0.9471 -9.4241 2.0810 22 1 0.0511 -8.5421 1.2910 23 1 1.0633 -10.7423 1.4072 24 1 0.3834 -9.6118 3.4420 25 6 4.4983 -5.5698 1.3408 26 7 2.2860 -1.0793 0.0058 27 1 -0.3633 0.0060 1.0275 28 1 -0.3633 0.8870 -0.5191 29 1 -0.3633 -0.8929 -0.5087 30 1 1.9712 2.1277 0.0006 31 1 3.6480 -3.3050 0.0186 32 1 6.3086 -3.6401 -0.8680 33 1 6.3074 -3.6298 0.9121 34 1 6.9866 -5.9847 -1.0078 35 1 7.1058 -6.0548 0.7667 36 1 5.2943 -7.8098 -0.9529 37 1 6.8341 -8.3229 -0.2208 38 1 4.8204 -8.9842 1.1430 39 1 5.9467 -7.9254 2.0280 40 1 3.4282 -10.1088 3.2899 41 1 5.1383 -5.3143 2.1852 42 1 3.5817 -4.9812 1.3830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023641439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:33 Heat of formation + Delta-G solvation = 27.996430 kcal Electronic energy + Delta-G solvation = -23246.162762 eV Core-core repulsion = 19841.087658 eV Total energy + Delta-G solvation = -3405.075104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.43220 -39.44744 -37.74367 -34.93994 -33.45219 -32.99885 -31.57116 -30.41617 -30.19633 -27.43279 -25.61209 -25.22894 -23.29007 -22.05030 -20.98506 -20.58927 -20.37210 -19.22966 -18.52370 -16.76239 -16.42906 -15.95581 -15.80433 -14.96677 -14.78321 -14.31261 -14.09438 -13.99501 -13.60504 -13.40987 -13.22357 -12.95941 -12.76512 -12.41107 -12.33150 -12.23337 -12.15534 -11.27765 -10.99514 -10.70903 -10.46651 -10.45578 -10.35356 -10.30711 -10.17754 -10.14255 -9.88216 -9.57004 -9.39965 -9.06708 -8.58928 -8.43673 -6.64909 -5.76047 -3.18182 1.21185 2.38489 2.46435 3.32107 3.39539 3.44156 3.47596 3.50137 4.13990 4.51483 4.71694 4.86892 4.98363 5.09932 5.30834 5.45023 5.48286 5.51782 5.54986 5.63410 5.72292 5.79769 5.82585 5.91982 6.00842 6.24484 6.31563 6.38133 6.39362 6.45793 6.62705 6.71503 6.80080 6.87547 6.91501 6.98619 7.38666 7.42440 7.70056 7.72285 7.83331 8.10485 8.47482 9.24172 9.87546 10.43946 11.32399 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004028 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.664601 B = 6949.563033 C = 8576.535868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.001 3.999 3 C -0.029 4.029 4 N -0.526 5.526 5 H 0.429 0.571 6 C 0.151 3.849 7 C 0.603 3.397 8 O -0.550 6.550 9 N -0.694 5.694 10 C 0.127 3.873 11 C -0.118 4.118 12 H 0.075 0.925 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.152 3.848 26 N -0.437 5.437 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.185 0.815 31 H 0.416 0.584 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.019 0.981 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 18.318 -7.305 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.134 4.134 3 C -0.168 4.168 4 N -0.127 5.127 5 H 0.269 0.731 6 C -0.111 4.111 7 C 0.387 3.613 8 O -0.428 6.428 9 N -0.345 5.345 10 C 0.004 3.996 11 C -0.139 4.139 12 H 0.094 0.906 13 C -0.137 4.137 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.026 3.974 26 N -0.160 5.160 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.202 0.798 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.305 17.593 -7.200 19.011 hybrid contribution -0.599 0.565 0.035 0.824 sum -0.294 18.158 -7.165 19.523 Atomic orbital electron populations 1.20077 0.86998 1.02996 1.02634 1.20940 0.97093 0.87913 1.07416 1.22711 0.83038 1.00991 1.10019 1.42883 1.09121 1.07568 1.53152 0.73138 1.22710 0.93874 0.82297 1.12176 1.16456 0.85368 0.82253 0.77238 1.90821 1.23751 1.76226 1.51980 1.45772 1.12040 1.04482 1.72169 1.21590 0.86948 0.88977 1.02090 1.21972 0.98720 0.91157 1.02056 0.90617 1.21339 0.96100 0.95862 1.00410 1.22172 0.99436 0.94621 1.01858 1.20797 0.88909 0.95337 0.90671 1.44049 1.05507 0.98904 1.82867 1.19244 0.83258 1.02796 1.32814 0.91541 1.25022 0.97326 0.99978 0.97305 1.70048 1.32286 1.16937 1.35440 0.86249 0.84099 0.79271 0.77343 1.20177 1.21609 1.21774 1.20920 0.96731 0.87450 0.92342 1.70166 0.99160 1.30938 1.15758 0.91058 0.91205 0.90710 0.79761 0.74685 0.91528 0.91130 0.93401 0.92438 0.92703 0.93177 0.89521 0.96477 0.93738 0.96349 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 2 C 0.00 0.01 7.07 -83.00 -0.59 -0.58 16 3 C -0.03 -0.25 11.91 -16.93 -0.20 -0.45 16 4 N -0.53 -5.29 6.14 -10.78 -0.07 -5.36 16 5 H 0.43 3.30 8.96 -40.82 -0.37 2.94 16 6 C 0.15 2.05 7.95 -154.51 -1.23 0.82 16 7 C 0.60 9.08 7.81 -12.53 -0.10 8.98 16 8 O -0.55 -9.24 17.09 5.28 0.09 -9.15 16 9 N -0.69 -10.20 5.33 -61.39 -0.33 -10.53 16 10 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 11 C -0.12 -1.97 2.37 -90.50 -0.21 -2.19 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 14 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 15 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 16 N -0.59 -14.69 3.00 -172.31 -0.52 -15.20 16 17 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 18 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 21 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.15 3.13 5.60 -3.71 -0.02 3.11 16 26 N -0.44 -6.15 10.90 -7.50 -0.08 -6.23 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.19 0.80 8.06 -52.48 -0.42 0.38 16 31 H 0.42 6.14 7.38 -40.82 -0.30 5.84 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 1.08 7.14 -51.92 -0.37 0.71 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -32.68 345.29 -9.05 -41.73 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.40 Total: 4.77 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.55 Total: 3.71 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.37 Total: -62.95 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.68 -9.05 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023641439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.724 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds