Wall clock time and date at job start Tue Mar 31 2020 04:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35560 * 125.82775 * 2 1 4 4 N 1.35406 * 107.16108 * 180.15706 * 3 2 1 5 5 H 0.97001 * 126.43492 * 179.84287 * 4 3 2 6 6 C 1.36668 * 107.12104 * 359.58257 * 4 3 2 7 7 C 1.47409 * 125.86468 * 180.28427 * 6 4 3 8 8 O 1.21603 * 119.99922 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99684 * 179.97438 * 7 6 4 10 10 C 1.46506 * 119.99336 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46738 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.49572 * 55.00261 * 11 10 9 13 13 C 1.53042 * 109.49697 * 175.06334 * 11 10 9 14 14 C 1.53043 * 109.53647 * 181.31950 * 13 11 10 15 15 C 1.53191 * 109.31097 * 298.63208 * 14 13 11 16 16 N 1.46925 * 108.77425 * 54.64173 * 15 14 13 17 17 C 1.36939 * 120.63659 * 126.38837 * 16 15 14 18 18 H 1.07994 * 120.00631 * 207.67857 * 17 16 15 19 19 C 1.38816 * 119.99357 * 27.67195 * 17 16 15 20 20 N 1.31613 * 120.00514 * 17.37588 * 19 17 16 21 21 Si 1.86806 * 119.99543 * 197.37373 * 19 17 16 22 22 H 1.48498 * 109.47266 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47052 * 120.00252 * 21 19 17 24 24 H 1.48501 * 109.46851 * 240.00277 * 21 19 17 25 25 C 1.46937 * 118.76229 * 306.40560 * 16 15 14 26 26 N 1.31622 * 108.27058 * 0.26489 * 6 4 3 27 27 H 1.08991 * 109.47376 * 270.33733 * 1 2 3 28 28 H 1.09005 * 109.46871 * 30.33970 * 1 2 3 29 29 H 1.09000 * 109.47159 * 150.33227 * 1 2 3 30 30 H 1.08008 * 126.42067 * 0.03729 * 3 2 1 31 31 H 0.96992 * 120.00127 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47319 * 299.99773 * 10 9 7 33 33 H 1.08997 * 109.46927 * 60.00761 * 10 9 7 34 34 H 1.08998 * 109.45925 * 301.33946 * 13 11 10 35 35 H 1.09000 * 109.45506 * 61.31383 * 13 11 10 36 36 H 1.08999 * 109.50173 * 58.58889 * 14 13 11 37 37 H 1.09001 * 109.49687 * 178.68546 * 14 13 11 38 38 H 1.09000 * 109.58611 * 174.42174 * 15 14 13 39 39 H 1.08999 * 109.59314 * 294.70801 * 15 14 13 40 40 H 0.96994 * 120.00221 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.56313 * 293.78857 * 25 16 15 42 42 H 1.09010 * 109.61164 * 173.35660 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 -0.0035 5 1 4.3789 1.2207 -0.0066 6 6 3.5465 -0.7004 0.0039 7 6 4.7174 -1.5959 0.0092 8 8 5.8401 -1.1288 0.0076 9 7 4.5435 -2.9324 0.0169 10 6 5.7073 -3.8223 0.0228 11 6 5.2361 -5.2780 0.0304 12 1 4.5641 -5.4472 -0.8110 13 6 6.4463 -6.2072 -0.0876 14 6 5.9735 -7.6626 -0.1133 15 6 5.2448 -7.9816 1.1959 16 7 4.1681 -7.0007 1.3890 17 6 2.8807 -7.4121 1.6094 18 1 2.0545 -6.7815 1.3158 19 6 2.6376 -8.6397 2.2101 20 7 3.5980 -9.2509 2.8705 21 14 0.9471 -9.4241 2.0810 22 1 0.0511 -8.5421 1.2910 23 1 1.0633 -10.7423 1.4072 24 1 0.3834 -9.6118 3.4420 25 6 4.4983 -5.5698 1.3408 26 7 2.2860 -1.0793 0.0058 27 1 -0.3633 0.0060 1.0275 28 1 -0.3633 0.8870 -0.5191 29 1 -0.3633 -0.8929 -0.5087 30 1 1.9712 2.1277 0.0006 31 1 3.6480 -3.3050 0.0186 32 1 6.3086 -3.6401 -0.8680 33 1 6.3074 -3.6298 0.9121 34 1 6.9866 -5.9847 -1.0078 35 1 7.1058 -6.0548 0.7667 36 1 5.2943 -7.8098 -0.9529 37 1 6.8341 -8.3229 -0.2208 38 1 4.8204 -8.9842 1.1430 39 1 5.9467 -7.9254 2.0280 40 1 3.4282 -10.1088 3.2899 41 1 5.1383 -5.3143 2.1852 42 1 3.5817 -4.9812 1.3830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023641439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:32 Heat of formation + Delta-G solvation = 5.573009 kcal Electronic energy + Delta-G solvation = -23247.135115 eV Core-core repulsion = 19841.087658 eV Total energy + Delta-G solvation = -3406.047457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.27448 -40.64380 -39.29691 -36.37054 -34.78714 -34.17725 -32.62799 -32.28427 -31.55643 -28.32710 -27.25461 -26.74468 -24.39294 -23.76581 -22.46673 -21.63413 -21.23095 -20.71297 -19.58354 -18.63090 -17.53015 -17.03022 -16.92725 -16.77599 -16.13631 -15.70349 -15.27324 -15.14788 -14.97173 -14.95429 -14.50958 -14.02551 -13.97540 -13.76157 -13.70063 -13.49260 -13.04183 -13.00577 -12.89166 -12.52518 -12.24216 -11.94815 -11.82088 -11.65114 -11.53662 -11.30063 -11.19234 -11.18791 -11.08144 -10.53283 -10.24159 -9.39133 -8.67383 -7.86292 -5.31478 0.28739 1.46532 1.48502 1.53141 1.55942 1.59330 2.30049 2.51876 2.53426 3.19882 3.28279 3.58818 3.93731 3.97937 4.00320 4.07617 4.11902 4.39348 4.41944 4.56242 4.59266 4.74660 4.84943 4.87169 4.89759 4.96133 4.99555 5.01093 5.11743 5.13428 5.19180 5.31706 5.36139 5.44004 5.58204 5.66230 5.68219 5.80026 6.17143 6.30424 6.40279 6.78667 7.00677 7.16247 7.87364 8.38636 9.19989 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014917 B = 0.004028 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.664601 B = 6949.563033 C = 8576.535868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.032 4.032 3 C 0.006 3.994 4 N -0.515 5.515 5 H 0.440 0.560 6 C 0.113 3.887 7 C 0.604 3.396 8 O -0.573 6.573 9 N -0.696 5.696 10 C 0.137 3.863 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.095 4.095 14 C -0.130 4.130 15 C 0.172 3.828 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.152 3.848 26 N -0.465 5.465 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.235 0.765 31 H 0.415 0.585 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.052 0.948 39 H -0.006 1.006 40 H 0.249 0.751 41 H 0.008 0.992 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.720 20.694 -8.734 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.166 4.166 3 C -0.134 4.134 4 N -0.118 5.118 5 H 0.282 0.718 6 C -0.147 4.147 7 C 0.389 3.611 8 O -0.453 6.453 9 N -0.346 5.346 10 C 0.014 3.986 11 C -0.122 4.122 12 H 0.093 0.907 13 C -0.133 4.133 14 C -0.169 4.169 15 C 0.047 3.953 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.026 3.974 26 N -0.190 5.190 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.251 0.749 31 H 0.251 0.749 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.012 0.988 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.146 19.987 -8.647 21.778 hybrid contribution -0.509 -0.060 0.518 0.729 sum -0.655 19.927 -8.129 21.532 Atomic orbital electron populations 1.20149 0.85347 1.03802 1.03089 1.21564 0.98458 0.88052 1.08537 1.23501 0.81715 1.02477 1.05704 1.42947 1.10306 1.06546 1.51962 0.71842 1.22329 0.93246 0.83509 1.15620 1.16631 0.85672 0.82296 0.76467 1.90792 1.24702 1.76556 1.53276 1.45761 1.11854 1.04700 1.72297 1.21449 0.86979 0.87507 1.02675 1.21729 0.98497 0.92701 0.99252 0.90708 1.21334 0.95955 0.93718 1.02324 1.22004 0.99555 0.96989 0.98392 1.20647 0.88390 0.93664 0.92620 1.44314 1.05056 1.00736 1.83141 1.19557 0.84545 1.02987 1.32089 0.91594 1.25765 1.00763 1.00597 0.97415 1.70199 1.34201 1.17090 1.36667 0.85246 0.80192 0.78237 0.77033 1.19044 1.21579 1.22006 1.21016 0.96951 0.85160 0.94258 1.70089 0.99843 1.32930 1.16107 0.90765 0.88113 0.92191 0.74853 0.74862 0.89863 0.91549 0.89778 0.92315 0.92912 0.91004 0.92993 0.98806 0.94165 0.97408 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 71.24 0.74 -0.21 16 2 C -0.03 -0.65 7.07 41.75 0.30 -0.35 16 3 C 0.01 0.08 11.91 83.52 0.99 1.08 16 4 N -0.51 -9.28 6.14 -188.01 -1.16 -10.44 16 5 H 0.44 5.80 8.96 -92.71 -0.83 4.97 16 6 C 0.11 2.97 7.95 136.28 1.08 4.06 16 7 C 0.60 17.99 7.81 86.66 0.68 18.67 16 8 O -0.57 -18.94 17.09 -4.04 -0.07 -19.01 16 9 N -0.70 -20.26 5.33 -466.38 -2.48 -22.74 16 10 C 0.14 3.88 5.07 86.38 0.44 4.32 16 11 C -0.10 -3.27 2.37 -10.72 -0.03 -3.30 16 12 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 13 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 14 C -0.13 -4.78 6.08 30.67 0.19 -4.59 16 15 C 0.17 8.40 5.31 86.36 0.46 8.86 16 16 N -0.61 -30.97 3.00 -699.07 -2.09 -33.06 16 17 C -0.26 -14.62 9.58 84.03 0.81 -13.81 16 18 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 19 C -0.05 -2.84 4.91 84.86 0.42 -2.43 16 20 N -0.94 -56.18 11.19 21.65 0.24 -55.94 16 21 Si 0.96 45.49 29.59 68.60 2.03 47.51 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 C 0.15 6.33 5.60 86.36 0.48 6.81 16 26 N -0.47 -12.86 10.90 -177.63 -1.94 -14.79 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.24 0.72 8.06 -2.91 -0.02 0.69 16 31 H 0.41 12.34 7.38 -92.71 -0.68 11.66 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.05 2.06 7.14 -2.38 -0.02 2.04 16 Total: -1.00 -73.28 345.29 0.77 -72.51 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.48 Total: 19.63 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 6.71 Total: 16.33 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -7.43 Total: -136.97 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.07 Total: -19.01 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -73.28 0.77 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023641439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.082 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds