Wall clock time and date at job start Tue Mar 31 2020 04:03:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35363 * 126.38042 * 2 1
4 4 C 1.41500 * 105.49921 * 180.14313 * 3 2 1
5 5 C 1.47712 * 126.52121 * 179.84957 * 4 3 2
6 6 O 1.21567 * 119.99630 * 359.70168 * 5 4 3
7 7 N 1.34777 * 120.00371 * 179.71508 * 5 4 3
8 8 C 1.46501 * 119.99951 * 179.97438 * 7 5 4
9 9 C 1.53002 * 109.46730 * 179.97438 * 8 7 5
10 10 H 1.08994 * 109.70657 * 60.12815 * 9 8 7
11 11 C 1.53628 * 109.66034 * 180.72284 * 9 8 7
12 12 C 1.53042 * 109.23861 * 174.54754 * 11 9 8
13 13 C 1.53038 * 109.54073 * 298.50790 * 12 11 9
14 14 C 1.53195 * 109.31005 * 61.36634 * 13 12 11
15 15 N 1.46921 * 109.58611 * 299.77166 * 9 8 7
16 16 C 1.36938 * 120.63489 * 6.62965 * 15 9 8
17 17 H 1.08007 * 119.99703 * 328.56278 * 16 15 9
18 18 C 1.38811 * 120.00173 * 148.83495 * 16 15 9
19 19 N 1.31617 * 119.99711 * 162.69722 * 18 16 15
20 20 Si 1.86799 * 120.00135 * 342.70015 * 18 16 15
21 21 H 1.48497 * 109.46966 * 88.89762 * 20 18 16
22 22 H 1.48496 * 109.47173 * 208.89955 * 20 18 16
23 23 H 1.48494 * 109.47207 * 328.90157 * 20 18 16
24 24 N 1.31813 * 106.96481 * 359.58073 * 4 3 2
25 25 N 1.28469 * 110.07161 * 0.26589 * 24 4 3
26 26 H 0.96998 * 124.88657 * 180.02562 * 25 24 4
27 27 H 1.09005 * 109.47137 * 270.29685 * 1 2 3
28 28 H 1.08999 * 109.47262 * 30.29819 * 1 2 3
29 29 H 1.09003 * 109.47003 * 150.29863 * 1 2 3
30 30 H 1.07997 * 127.25559 * 359.97438 * 3 2 1
31 31 H 0.97001 * 119.99582 * 359.97438 * 7 5 4
32 32 H 1.08998 * 109.47253 * 59.99706 * 8 7 5
33 33 H 1.09001 * 109.46853 * 299.99512 * 8 7 5
34 34 H 1.08994 * 109.63689 * 54.55625 * 11 9 8
35 35 H 1.09000 * 109.45780 * 294.42770 * 11 9 8
36 36 H 1.09005 * 109.45764 * 178.48394 * 12 11 9
37 37 H 1.09007 * 109.44805 * 58.52610 * 12 11 9
38 38 H 1.08999 * 109.49684 * 301.41823 * 13 12 11
39 39 H 1.08998 * 109.52394 * 181.33349 * 13 12 11
40 40 H 1.09001 * 109.58526 * 185.58033 * 14 13 12
41 41 H 1.08999 * 109.70612 * 65.22410 * 14 13 12
42 42 H 0.97005 * 120.00128 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3100 1.0898 0.0000
4 6 3.6320 0.5855 -0.0034
5 6 4.8764 1.3812 -0.0078
6 8 4.8213 2.5956 -0.0143
7 7 6.0730 0.7610 -0.0050
8 6 7.3072 1.5504 -0.0099
9 6 8.5140 0.6099 -0.0046
10 1 8.4896 -0.0244 -0.8907
11 6 9.8109 1.4333 0.0084
12 6 11.0066 0.4886 0.1509
13 6 10.9047 -0.2697 1.4763
14 6 9.6226 -1.1082 1.4828
15 7 8.4803 -0.2279 1.2019
16 6 7.4022 -0.1931 2.0456
17 1 6.8374 0.7200 2.1626
18 6 7.0389 -1.3298 2.7547
19 7 6.2444 -1.2279 3.7990
20 14 7.6775 -3.0039 2.2267
21 1 8.9743 -3.2733 2.8982
22 1 6.6958 -4.0509 2.6077
23 1 7.8702 -3.0184 0.7544
24 7 3.5420 -0.7296 0.0041
25 7 2.3081 -1.0871 0.0061
26 1 1.9966 -2.0057 0.0116
27 1 -0.3634 0.0053 1.0277
28 1 -0.3634 0.8873 -0.5184
29 1 -0.3633 -0.8927 -0.5092
30 1 2.0057 2.1260 -0.0004
31 1 6.1170 -0.2080 0.0004
32 1 7.3368 2.1840 0.8765
33 1 7.3360 2.1740 -0.9035
34 1 9.7948 2.1288 0.8474
35 1 9.8967 1.9904 -0.9245
36 1 11.9304 1.0670 0.1335
37 1 11.0078 -0.2224 -0.6753
38 1 10.8782 0.4419 2.3015
39 1 11.7685 -0.9250 1.5884
40 1 9.4944 -1.5722 2.4608
41 1 9.6851 -1.8813 0.7170
42 1 5.9907 -2.0221 4.2948
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001024339519.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:03:53
Heat of formation + Delta-G solvation = 57.617913 kcal
Electronic energy + Delta-G solvation = -24285.156142 eV
Core-core repulsion = 20881.365522 eV
Total energy + Delta-G solvation = -3403.790620 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.33657 -38.95791 -37.74445 -34.16939 -32.97707 -32.61870 -31.62455 -30.73621
-30.53832 -26.99996 -26.21281 -24.84449 -22.93035 -22.61782 -20.97929 -20.63311
-19.62570 -19.02217 -17.40876 -16.80087 -16.06302 -15.64230 -15.42150 -15.08719
-14.83403 -13.76309 -13.69712 -13.66266 -13.64167 -13.34297 -13.18202 -13.01234
-12.93570 -12.45930 -12.22417 -12.01721 -11.89975 -11.58577 -11.24838 -10.77380
-10.60889 -10.47697 -10.39972 -10.14990 -9.90551 -9.61559 -9.44780 -9.32335
-9.05156 -8.70045 -8.61705 -8.11864 -6.87577 -5.90482 -3.31496 2.03879
2.39597 3.10983 3.31913 3.47554 3.49537 3.88277 4.12651 4.54067
4.78246 4.85273 4.88732 5.09029 5.30034 5.39033 5.39917 5.45887
5.55875 5.71291 5.74629 5.81081 5.87175 5.95761 6.01629 6.11349
6.16199 6.24564 6.28181 6.43302 6.47995 6.51534 6.61576 6.68582
6.74009 6.80755 7.03430 7.21155 7.27636 8.00376 8.11265 8.39957
8.46588 8.96148 8.98377 9.74561 10.12077 11.24323
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017506 B = 0.005636 C = 0.004604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.112999 B = 4967.026251 C = 6080.312053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.001 3.999
3 C -0.181 4.181
4 C 0.002 3.998
5 C 0.598 3.402
6 O -0.558 6.558
7 N -0.679 5.679
8 C 0.134 3.866
9 C 0.163 3.837
10 H 0.037 0.963
11 C -0.128 4.128
12 C -0.108 4.108
13 C -0.135 4.135
14 C 0.125 3.875
15 N -0.604 5.604
16 C -0.261 4.261
17 H 0.093 0.907
18 C 0.032 3.968
19 N -0.903 5.903
20 Si 0.882 3.118
21 H -0.290 1.290
22 H -0.307 1.307
23 H -0.272 1.272
24 N -0.244 5.244
25 N -0.385 5.385
26 H 0.441 0.559
27 H 0.076 0.924
28 H 0.083 0.917
29 H 0.067 0.933
30 H 0.159 0.841
31 H 0.417 0.583
32 H 0.071 0.929
33 H 0.060 0.940
34 H 0.066 0.934
35 H 0.056 0.944
36 H 0.050 0.950
37 H 0.053 0.947
38 H 0.063 0.937
39 H 0.050 0.950
40 H 0.072 0.928
41 H 0.023 0.977
42 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.526 0.290 -9.508 10.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.124 4.124
3 C -0.209 4.209
4 C -0.159 4.159
5 C 0.382 3.618
6 O -0.436 6.436
7 N -0.329 5.329
8 C 0.010 3.990
9 C 0.056 3.944
10 H 0.054 0.946
11 C -0.167 4.167
12 C -0.146 4.146
13 C -0.175 4.175
14 C 0.000 4.000
15 N -0.329 5.329
16 C -0.389 4.389
17 H 0.111 0.889
18 C -0.168 4.168
19 N -0.546 5.546
20 Si 0.713 3.287
21 H -0.218 1.218
22 H -0.236 1.236
23 H -0.197 1.197
24 N -0.080 5.080
25 N -0.099 5.099
26 H 0.285 0.715
27 H 0.095 0.905
28 H 0.102 0.898
29 H 0.086 0.914
30 H 0.176 0.824
31 H 0.255 0.745
32 H 0.090 0.910
33 H 0.078 0.922
34 H 0.085 0.915
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.072 0.928
38 H 0.082 0.918
39 H 0.069 0.931
40 H 0.090 0.910
41 H 0.041 0.959
42 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -3.971 0.152 -9.374 10.182
hybrid contribution -0.238 -1.443 0.070 1.464
sum -4.209 -1.291 -9.304 10.293
Atomic orbital electron populations
1.20295 0.86960 1.03477 1.03172 1.21378 0.95137 0.87454 1.08478
1.21463 0.90708 0.99422 1.09336 1.22016 0.95328 0.89624 1.08943
1.16818 0.81938 0.86172 0.76847 1.90713 1.87122 1.13047 1.52717
1.45804 1.04197 1.11750 1.71146 1.21297 0.82823 0.93650 1.01185
1.20844 0.92056 0.91519 0.89985 0.94557 1.22006 0.95501 0.98125
1.01110 1.21369 0.97239 0.98148 0.97826 1.22002 0.98313 0.99579
0.97561 1.21372 0.86818 0.92342 0.99476 1.44422 1.16948 1.48097
1.23481 1.18973 1.05296 0.96967 1.17653 0.88928 1.25309 0.96900
0.97316 0.97268 1.69813 1.38031 1.28890 1.17835 0.87000 0.76632
0.85687 0.79331 1.21765 1.23568 1.19676 1.73697 1.00899 1.15314
1.18053 1.43310 1.03150 1.09288 1.54145 0.71535 0.90488 0.89784
0.91443 0.82370 0.74512 0.91031 0.92223 0.91544 0.92557 0.93090
0.92796 0.91785 0.93131 0.90982 0.95944 0.92979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.66 10.44 36.01 0.38 -0.28 16
2 C 0.00 0.01 7.23 -82.21 -0.59 -0.58 16
3 C -0.18 -2.98 10.73 -39.37 -0.42 -3.40 16
4 C 0.00 0.05 7.13 -82.76 -0.59 -0.54 16
5 C 0.60 12.98 7.82 -12.39 -0.10 12.89 16
6 O -0.56 -13.02 16.93 5.31 0.09 -12.93 16
7 N -0.68 -14.34 3.84 -61.29 -0.24 -14.58 16
8 C 0.13 2.63 4.44 -4.04 -0.02 2.61 16
9 C 0.16 3.08 3.03 -67.37 -0.20 2.88 16
10 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
11 C -0.13 -2.05 5.40 -26.38 -0.14 -2.19 16
12 C -0.11 -1.65 5.88 -26.69 -0.16 -1.81 16
13 C -0.14 -2.36 6.08 -26.61 -0.16 -2.52 16
14 C 0.13 2.66 4.19 -3.71 -0.02 2.64 16
15 N -0.60 -13.64 2.71 -164.52 -0.45 -14.09 16
16 C -0.26 -6.90 7.42 -15.06 -0.11 -7.01 16
17 H 0.09 2.71 6.07 -52.48 -0.32 2.39 16
18 C 0.03 0.89 5.27 -17.43 -0.09 0.79 16
19 N -0.90 -27.27 13.97 55.49 0.78 -26.50 16
20 Si 0.88 22.06 24.32 -169.99 -4.13 17.92 16
21 H -0.29 -7.08 6.51 56.52 0.37 -6.71 16
22 H -0.31 -7.92 7.11 56.52 0.40 -7.52 16
23 H -0.27 -6.63 6.75 56.52 0.38 -6.25 16
24 N -0.24 -4.58 11.92 33.42 0.40 -4.18 16
25 N -0.38 -5.46 6.83 33.50 0.23 -5.23 16
26 H 0.44 4.53 8.96 -190.44 -1.71 2.83 16
27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16
31 H 0.42 9.23 7.12 -40.82 -0.29 8.94 16
32 H 0.07 1.55 7.42 -51.93 -0.39 1.16 16
33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.07 1.70 4.64 -51.93 -0.24 1.45 16
41 H 0.02 0.48 7.05 -51.93 -0.37 0.11 16
42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
LS Contribution 333.13 15.07 5.02 5.02
Total: -1.00 -33.43 333.13 -8.10 -41.54
By element:
Atomic # 1 Polarization: 17.13 SS G_CDS: -7.57 Total: 9.56 kcal
Atomic # 6 Polarization: 5.71 SS G_CDS: -2.23 Total: 3.48 kcal
Atomic # 7 Polarization: -65.30 SS G_CDS: 0.72 Total: -64.58 kcal
Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -4.13 Total: 17.92 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -33.43 -8.10 -41.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024339519.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.154 kcal
(2) G-P(sol) polarization free energy of solvation -33.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.722 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.618 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds