Wall clock time and date at job start Tue Mar 31 2020 04:03:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.35363 * 126.38042 * 2 1
4 4 C 1.41500 * 105.49921 * 180.14313 * 3 2 1
5 5 C 1.47712 * 126.52121 * 179.84957 * 4 3 2
6 6 O 1.21567 * 119.99630 * 359.70168 * 5 4 3
7 7 N 1.34777 * 120.00371 * 179.71508 * 5 4 3
8 8 C 1.46501 * 119.99951 * 179.97438 * 7 5 4
9 9 C 1.53002 * 109.46730 * 179.97438 * 8 7 5
10 10 H 1.08994 * 109.70657 * 60.12815 * 9 8 7
11 11 C 1.53628 * 109.66034 * 180.72284 * 9 8 7
12 12 C 1.53042 * 109.23861 * 174.54754 * 11 9 8
13 13 C 1.53038 * 109.54073 * 298.50790 * 12 11 9
14 14 C 1.53195 * 109.31005 * 61.36634 * 13 12 11
15 15 N 1.46921 * 109.58611 * 299.77166 * 9 8 7
16 16 C 1.36938 * 120.63489 * 6.62965 * 15 9 8
17 17 H 1.08007 * 119.99703 * 328.56278 * 16 15 9
18 18 C 1.38811 * 120.00173 * 148.83495 * 16 15 9
19 19 N 1.31617 * 119.99711 * 162.69722 * 18 16 15
20 20 Si 1.86799 * 120.00135 * 342.70015 * 18 16 15
21 21 H 1.48497 * 109.46966 * 88.89762 * 20 18 16
22 22 H 1.48496 * 109.47173 * 208.89955 * 20 18 16
23 23 H 1.48494 * 109.47207 * 328.90157 * 20 18 16
24 24 N 1.31813 * 106.96481 * 359.58073 * 4 3 2
25 25 N 1.28469 * 110.07161 * 0.26589 * 24 4 3
26 26 H 0.96998 * 124.88657 * 180.02562 * 25 24 4
27 27 H 1.09005 * 109.47137 * 270.29685 * 1 2 3
28 28 H 1.08999 * 109.47262 * 30.29819 * 1 2 3
29 29 H 1.09003 * 109.47003 * 150.29863 * 1 2 3
30 30 H 1.07997 * 127.25559 * 359.97438 * 3 2 1
31 31 H 0.97001 * 119.99582 * 359.97438 * 7 5 4
32 32 H 1.08998 * 109.47253 * 59.99706 * 8 7 5
33 33 H 1.09001 * 109.46853 * 299.99512 * 8 7 5
34 34 H 1.08994 * 109.63689 * 54.55625 * 11 9 8
35 35 H 1.09000 * 109.45780 * 294.42770 * 11 9 8
36 36 H 1.09005 * 109.45764 * 178.48394 * 12 11 9
37 37 H 1.09007 * 109.44805 * 58.52610 * 12 11 9
38 38 H 1.08999 * 109.49684 * 301.41823 * 13 12 11
39 39 H 1.08998 * 109.52394 * 181.33349 * 13 12 11
40 40 H 1.09001 * 109.58526 * 185.58033 * 14 13 12
41 41 H 1.08999 * 109.70612 * 65.22410 * 14 13 12
42 42 H 0.97005 * 120.00128 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3100 1.0898 0.0000
4 6 3.6320 0.5855 -0.0034
5 6 4.8764 1.3812 -0.0078
6 8 4.8213 2.5956 -0.0143
7 7 6.0730 0.7610 -0.0050
8 6 7.3072 1.5504 -0.0099
9 6 8.5140 0.6099 -0.0046
10 1 8.4896 -0.0244 -0.8907
11 6 9.8109 1.4333 0.0084
12 6 11.0066 0.4886 0.1509
13 6 10.9047 -0.2697 1.4763
14 6 9.6226 -1.1082 1.4828
15 7 8.4803 -0.2279 1.2019
16 6 7.4022 -0.1931 2.0456
17 1 6.8374 0.7200 2.1626
18 6 7.0389 -1.3298 2.7547
19 7 6.2444 -1.2279 3.7990
20 14 7.6775 -3.0039 2.2267
21 1 8.9743 -3.2733 2.8982
22 1 6.6958 -4.0509 2.6077
23 1 7.8702 -3.0184 0.7544
24 7 3.5420 -0.7296 0.0041
25 7 2.3081 -1.0871 0.0061
26 1 1.9966 -2.0057 0.0116
27 1 -0.3634 0.0053 1.0277
28 1 -0.3634 0.8873 -0.5184
29 1 -0.3633 -0.8927 -0.5092
30 1 2.0057 2.1260 -0.0004
31 1 6.1170 -0.2080 0.0004
32 1 7.3368 2.1840 0.8765
33 1 7.3360 2.1740 -0.9035
34 1 9.7948 2.1288 0.8474
35 1 9.8967 1.9904 -0.9245
36 1 11.9304 1.0670 0.1335
37 1 11.0078 -0.2224 -0.6753
38 1 10.8782 0.4419 2.3015
39 1 11.7685 -0.9250 1.5884
40 1 9.4944 -1.5722 2.4608
41 1 9.6851 -1.8813 0.7170
42 1 5.9907 -2.0221 4.2948
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001024339519.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:03:52
Heat of formation + Delta-G solvation = 32.741083 kcal
Electronic energy + Delta-G solvation = -24286.234882 eV
Core-core repulsion = 20881.365522 eV
Total energy + Delta-G solvation = -3404.869361 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.60414 -40.61754 -39.37020 -35.78954 -34.85408 -33.71500 -32.95600 -32.56209
-32.06463 -28.13220 -27.67829 -26.59683 -24.46837 -24.27257 -22.24053 -22.11504
-21.21350 -20.61113 -18.59580 -18.59457 -17.75459 -17.27216 -16.87984 -16.72652
-16.53494 -15.35201 -15.29014 -15.16923 -14.91059 -14.79281 -14.76184 -14.30780
-14.02300 -13.75299 -13.68241 -13.54645 -13.21227 -13.04817 -12.92751 -12.54345
-12.28733 -11.95970 -11.78668 -11.69853 -11.55801 -11.35744 -11.20214 -11.00026
-10.60688 -10.42001 -9.88842 -9.82258 -8.77356 -8.07026 -5.43115 0.60834
1.17170 1.31018 1.41199 1.49357 1.96906 2.35660 2.46235 2.55508
3.12002 3.32551 3.52282 3.85015 3.91847 4.08680 4.13498 4.19477
4.33208 4.42604 4.50149 4.52284 4.64017 4.65585 4.75364 4.81390
4.87845 4.95214 5.05740 5.07472 5.12281 5.17649 5.26725 5.31991
5.32746 5.40479 5.57799 5.64986 5.96692 6.18541 6.26658 6.60749
6.94976 6.98775 7.28668 7.69139 8.09398 9.12066
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.017506 B = 0.005636 C = 0.004604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.112999 B = 4967.026251 C = 6080.312053
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.031 3.969
3 C -0.209 4.209
4 C -0.033 4.033
5 C 0.591 3.409
6 O -0.585 6.585
7 N -0.681 5.681
8 C 0.135 3.865
9 C 0.161 3.839
10 H 0.052 0.948
11 C -0.122 4.122
12 C -0.103 4.103
13 C -0.130 4.130
14 C 0.118 3.882
15 N -0.617 5.617
16 C -0.227 4.227
17 H 0.055 0.945
18 C -0.026 4.026
19 N -0.956 5.956
20 Si 0.943 3.057
21 H -0.281 1.281
22 H -0.321 1.321
23 H -0.259 1.259
24 N -0.277 5.277
25 N -0.370 5.370
26 H 0.458 0.542
27 H 0.089 0.911
28 H 0.100 0.900
29 H 0.096 0.904
30 H 0.165 0.835
31 H 0.411 0.589
32 H 0.041 0.959
33 H 0.084 0.916
34 H 0.052 0.948
35 H 0.089 0.911
36 H 0.080 0.920
37 H 0.067 0.933
38 H 0.049 0.951
39 H 0.076 0.924
40 H 0.045 0.955
41 H 0.033 0.967
42 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.029 -0.508 -11.658 12.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.095 4.095
3 C -0.237 4.237
4 C -0.193 4.193
5 C 0.376 3.624
6 O -0.465 6.465
7 N -0.329 5.329
8 C 0.012 3.988
9 C 0.055 3.945
10 H 0.069 0.931
11 C -0.162 4.162
12 C -0.140 4.140
13 C -0.169 4.169
14 C -0.006 4.006
15 N -0.343 5.343
16 C -0.357 4.357
17 H 0.072 0.928
18 C -0.220 4.220
19 N -0.602 5.602
20 Si 0.773 3.227
21 H -0.208 1.208
22 H -0.250 1.250
23 H -0.183 1.183
24 N -0.114 5.114
25 N -0.087 5.087
26 H 0.305 0.695
27 H 0.108 0.892
28 H 0.119 0.881
29 H 0.115 0.885
30 H 0.183 0.817
31 H 0.248 0.752
32 H 0.060 0.940
33 H 0.102 0.898
34 H 0.071 0.929
35 H 0.108 0.892
36 H 0.099 0.901
37 H 0.086 0.914
38 H 0.068 0.932
39 H 0.095 0.905
40 H 0.063 0.937
41 H 0.050 0.950
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -3.419 -0.653 -11.569 12.081
hybrid contribution -0.458 -1.126 0.714 1.410
sum -3.877 -1.779 -10.854 11.662
Atomic orbital electron populations
1.20536 0.82690 1.05797 1.04641 1.22060 0.97216 0.85770 1.04493
1.21724 0.89946 1.00926 1.11098 1.21950 0.95650 0.90352 1.11371
1.17226 0.82819 0.86197 0.76156 1.90665 1.87667 1.14089 1.54121
1.45858 1.04756 1.11402 1.70927 1.21376 0.82878 0.93736 1.00845
1.21080 0.93303 0.91353 0.88731 0.93066 1.21971 0.94010 0.97864
1.02326 1.21373 0.97870 0.98194 0.96606 1.21929 0.96936 0.99354
0.98688 1.21441 0.88069 0.92943 0.98195 1.44552 1.16497 1.48885
1.24370 1.18706 1.05178 0.95129 1.16661 0.92759 1.25838 0.98036
1.00554 0.97610 1.69962 1.41159 1.29282 1.19834 0.86011 0.75927
0.81292 0.79452 1.20786 1.25034 1.18349 1.73581 1.03277 1.15009
1.19490 1.43422 1.02180 1.10658 1.52477 0.69468 0.89212 0.88109
0.88527 0.81697 0.75219 0.94011 0.89825 0.92933 0.89244 0.90101
0.91448 0.93245 0.90504 0.93722 0.94960 0.93575
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.01 10.44 71.24 0.74 -0.27 16
2 C 0.03 0.77 7.23 41.40 0.30 1.07 16
3 C -0.21 -6.91 10.73 22.41 0.24 -6.67 16
4 C -0.03 -1.36 7.13 42.46 0.30 -1.06 16
5 C 0.59 26.88 7.82 86.75 0.68 27.56 16
6 O -0.58 -28.60 16.93 -3.93 -0.07 -28.67 16
7 N -0.68 -29.84 3.84 -466.10 -1.79 -31.64 16
8 C 0.14 5.36 4.44 86.38 0.38 5.75 16
9 C 0.16 5.89 3.03 45.12 0.14 6.03 16
10 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
11 C -0.12 -3.58 5.40 30.82 0.17 -3.41 16
12 C -0.10 -2.71 5.88 30.62 0.18 -2.53 16
13 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16
14 C 0.12 4.83 4.19 86.36 0.36 5.19 16
15 N -0.62 -27.70 2.71 -674.41 -1.83 -29.53 16
16 C -0.23 -12.42 7.42 84.03 0.62 -11.79 16
17 H 0.05 3.38 6.07 -2.91 -0.02 3.36 16
18 C -0.03 -1.48 5.27 84.86 0.45 -1.03 16
19 N -0.96 -60.36 13.97 21.65 0.30 -60.06 16
20 Si 0.94 46.51 24.32 68.60 1.67 48.18 16
21 H -0.28 -13.28 6.51 99.48 0.65 -12.63 16
22 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16
23 H -0.26 -12.06 6.75 99.48 0.67 -11.38 16
24 N -0.28 -10.58 11.92 -48.17 -0.57 -11.15 16
25 N -0.37 -10.18 6.83 -47.93 -0.33 -10.51 16
26 H 0.46 8.67 8.96 -219.99 -1.97 6.70 16
27 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16
28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16
30 H 0.17 5.02 8.06 -2.91 -0.02 5.00 16
31 H 0.41 18.83 7.12 -92.71 -0.66 18.17 16
32 H 0.04 1.89 7.42 -2.39 -0.02 1.88 16
33 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16
34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16
36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16
37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16
38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
40 H 0.04 2.07 4.64 -2.39 -0.01 2.06 16
41 H 0.03 1.27 7.05 -2.39 -0.02 1.26 16
42 H 0.26 15.54 8.31 -92.70 -0.77 14.76 16
Total: -1.00 -77.27 333.13 0.45 -76.81
By element:
Atomic # 1 Polarization: 33.39 SS G_CDS: -1.68 Total: 31.72 kcal
Atomic # 6 Polarization: 10.10 SS G_CDS: 4.75 Total: 14.85 kcal
Atomic # 7 Polarization: -138.67 SS G_CDS: -4.22 Total: -142.89 kcal
Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.67 kcal
Atomic # 14 Polarization: 46.51 SS G_CDS: 1.67 Total: 48.18 kcal
Total: -77.27 0.45 -76.81 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024339519.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.554 kcal
(2) G-P(sol) polarization free energy of solvation -77.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.741 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds