Wall clock time and date at job start Tue Mar 31 2020 03:49:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30450 * 125.98838 * 2 1
4 4 N 1.39938 * 108.89326 * 179.97438 * 3 2 1
5 5 H 0.97001 * 125.74925 * 179.97438 * 4 3 2
6 6 C 1.34255 * 108.49407 * 359.75426 * 4 3 2
7 7 C 1.38040 * 107.41753 * 0.39110 * 6 4 3
8 8 C 1.47424 * 126.41801 * 179.87090 * 7 6 4
9 9 O 1.21605 * 120.00294 * 179.68916 * 8 7 6
10 10 N 1.34784 * 119.99957 * 359.68843 * 8 7 6
11 11 C 1.46493 * 120.00454 * 180.02562 * 10 8 7
12 12 C 1.53000 * 109.47389 * 180.02562 * 11 10 8
13 13 H 1.08993 * 109.70027 * 300.09385 * 12 11 10
14 14 C 1.52764 * 109.50929 * 179.97438 * 12 11 10
15 15 C 1.53042 * 109.38150 * 185.70346 * 14 12 11
16 16 C 1.53039 * 109.53368 * 61.24243 * 15 14 12
17 17 C 1.53190 * 109.31401 * 298.63133 * 16 15 14
18 18 N 1.46921 * 108.77469 * 54.63928 * 17 16 15
19 19 C 1.36937 * 120.63137 * 126.37127 * 18 17 16
20 20 H 1.08004 * 119.99759 * 218.59523 * 19 18 17
21 21 C 1.38815 * 120.00238 * 38.59335 * 19 18 17
22 22 N 1.31619 * 119.99983 * 215.45716 * 21 19 18
23 23 Si 1.86798 * 119.99585 * 35.45531 * 21 19 18
24 24 H 1.48501 * 109.46945 * 84.70707 * 23 21 19
25 25 H 1.48502 * 109.46943 * 204.70030 * 23 21 19
26 26 H 1.48497 * 109.47299 * 324.70485 * 23 21 19
27 27 H 1.08999 * 109.47086 * 270.04327 * 1 2 3
28 28 H 1.09000 * 109.47023 * 30.03780 * 1 2 3
29 29 H 1.09000 * 109.47030 * 150.03692 * 1 2 3
30 30 H 1.08000 * 126.29345 * 180.24020 * 6 4 3
31 31 H 0.97008 * 119.99400 * 0.02562 * 10 8 7
32 32 H 1.09001 * 109.46914 * 59.99356 * 11 10 8
33 33 H 1.09010 * 109.46890 * 300.00437 * 11 10 8
34 34 H 1.09007 * 109.56108 * 65.67042 * 14 12 11
35 35 H 1.09001 * 109.38679 * 305.63379 * 14 12 11
36 36 H 1.08993 * 109.46062 * 301.22206 * 15 14 12
37 37 H 1.09004 * 109.44563 * 181.25372 * 15 14 12
38 38 H 1.09007 * 109.49173 * 178.68031 * 16 15 14
39 39 H 1.08999 * 109.49967 * 58.58987 * 16 15 14
40 40 H 1.08999 * 109.58695 * 294.85142 * 17 16 15
41 41 H 1.09001 * 109.70501 * 174.49746 * 17 16 15
42 42 H 0.96995 * 119.99715 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2736 1.0555 0.0000
4 7 3.6111 0.6442 0.0006
5 1 4.3842 1.2300 0.0004
6 6 3.6439 -0.6980 0.0064
7 6 2.3373 -1.1432 0.0005
8 6 1.8915 -2.5485 0.0011
9 8 0.7039 -2.8096 0.0012
10 7 2.8004 -3.5438 0.0016
11 6 2.3575 -4.9402 0.0016
12 6 3.5783 -5.8624 0.0027
13 1 4.1823 -5.6736 -0.8847
14 6 3.1174 -7.3189 0.0034
15 6 4.3337 -8.2364 0.1480
16 6 5.0359 -7.9496 1.4772
17 6 5.5219 -6.4969 1.4903
18 7 4.3819 -5.6143 1.2075
19 6 4.0709 -4.5834 2.0535
20 1 3.0374 -4.3472 2.2596
21 6 5.0839 -3.8421 2.6462
22 7 4.9359 -3.3882 3.8727
23 14 6.6571 -3.4890 1.7029
24 1 6.4639 -2.2889 0.8498
25 1 7.7640 -3.2417 2.6615
26 1 6.9939 -4.6553 0.8477
27 1 -0.3633 0.0008 1.0277
28 1 -0.3633 0.8897 -0.5144
29 1 -0.3633 -0.8903 -0.5133
30 1 4.5297 -1.3158 0.0120
31 1 3.7478 -3.3354 0.0019
32 1 1.7581 -5.1312 -0.8886
33 1 1.7575 -5.1310 0.8914
34 1 2.6043 -7.5397 -0.9327
35 1 2.4367 -7.4826 0.8388
36 1 5.0253 -8.0550 -0.6746
37 1 4.0083 -9.2765 0.1263
38 1 5.8884 -8.6195 1.5903
39 1 4.3375 -8.1070 2.2991
40 1 6.2877 -6.3608 0.7267
41 1 5.9359 -6.2566 2.4697
42 1 5.6436 -2.8699 4.2867
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001024586516.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:05
Heat of formation + Delta-G solvation = 52.538583 kcal
Electronic energy + Delta-G solvation = -24548.440856 eV
Core-core repulsion = 21144.429979 eV
Total energy + Delta-G solvation = -3404.010877 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.09248 -38.85550 -37.67607 -34.20592 -33.06418 -32.66150 -31.23995 -30.74632
-29.68308 -27.72765 -26.08373 -24.67448 -22.53726 -22.47393 -20.88747 -19.94349
-19.56938 -19.13689 -18.07289 -16.62075 -15.85766 -15.50281 -15.01541 -14.95792
-14.70279 -14.08269 -13.78563 -13.60301 -13.52281 -13.20939 -13.11513 -12.67309
-12.55789 -12.54778 -12.23098 -11.92420 -11.74045 -11.61678 -11.29508 -10.84677
-10.70172 -10.66570 -10.50344 -10.20875 -9.91016 -9.71969 -9.58873 -9.29429
-9.16006 -8.58993 -8.48704 -8.10123 -6.83639 -6.17403 -3.44514 1.82786
2.47328 2.91386 3.14556 3.35003 3.38369 3.93414 4.12902 4.43271
4.77427 4.81383 4.96725 5.15871 5.34801 5.42934 5.45279 5.52647
5.71742 5.77670 5.81034 5.93603 5.95169 6.02655 6.08209 6.18737
6.24488 6.26699 6.31302 6.45376 6.49785 6.51434 6.62309 6.75656
6.82095 6.84946 7.04864 7.24061 7.30775 7.75280 7.90759 8.34331
8.36701 8.89699 9.00990 9.61378 10.09623 10.97577
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.016709 B = 0.006236 C = 0.005010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.330183 B = 4488.757926 C = 5587.264224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.131 3.869
3 N -0.309 5.309
4 N -0.466 5.466
5 H 0.440 0.560
6 C 0.110 3.890
7 C -0.276 4.276
8 C 0.590 3.410
9 O -0.563 6.563
10 N -0.692 5.692
11 C 0.139 3.861
12 C 0.157 3.843
13 H 0.033 0.967
14 C -0.127 4.127
15 C -0.108 4.108
16 C -0.138 4.138
17 C 0.144 3.856
18 N -0.596 5.596
19 C -0.271 4.271
20 H 0.082 0.918
21 C 0.051 3.949
22 N -0.871 5.871
23 Si 0.824 3.176
24 H -0.292 1.292
25 H -0.296 1.296
26 H -0.257 1.257
27 H 0.078 0.922
28 H 0.066 0.934
29 H 0.096 0.904
30 H 0.183 0.817
31 H 0.404 0.596
32 H 0.057 0.943
33 H 0.070 0.930
34 H 0.055 0.945
35 H 0.065 0.935
36 H 0.052 0.948
37 H 0.049 0.951
38 H 0.049 0.951
39 H 0.062 0.938
40 H 0.023 0.977
41 H 0.065 0.935
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.346 -0.018 -9.214 9.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.037 4.037
3 N -0.133 5.133
4 N -0.171 5.171
5 H 0.284 0.716
6 C -0.042 4.042
7 C -0.291 4.291
8 C 0.377 3.623
9 O -0.444 6.444
10 N -0.342 5.342
11 C 0.015 3.985
12 C 0.050 3.950
13 H 0.050 0.950
14 C -0.167 4.167
15 C -0.146 4.146
16 C -0.177 4.177
17 C 0.019 3.981
18 N -0.321 5.321
19 C -0.399 4.399
20 H 0.100 0.900
21 C -0.152 4.152
22 N -0.509 5.509
23 Si 0.650 3.350
24 H -0.219 1.219
25 H -0.223 1.223
26 H -0.181 1.181
27 H 0.097 0.903
28 H 0.085 0.915
29 H 0.115 0.885
30 H 0.200 0.800
31 H 0.240 0.760
32 H 0.075 0.925
33 H 0.088 0.912
34 H 0.073 0.927
35 H 0.084 0.916
36 H 0.071 0.929
37 H 0.068 0.932
38 H 0.067 0.933
39 H 0.080 0.920
40 H 0.041 0.959
41 H 0.084 0.916
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -1.110 1.141 -9.042 9.181
hybrid contribution 2.297 -0.157 -0.200 2.311
sum 1.187 0.984 -9.243 9.370
Atomic orbital electron populations
1.20310 0.85853 1.03644 1.03510 1.22438 0.97235 0.88853 0.95152
1.77052 0.86326 1.22616 1.27285 1.46005 1.07609 1.05484 1.57974
0.71554 1.23291 0.99524 0.85425 0.95982 1.20354 0.91795 0.95051
1.21868 1.17126 0.85580 0.83480 0.76096 1.90663 1.16468 1.84446
1.52836 1.45709 1.09855 1.05488 1.73099 1.21223 0.96147 0.80148
1.00990 1.20759 0.91601 0.92330 0.90283 0.94953 1.21842 0.97715
0.96094 1.01040 1.21362 0.97263 0.98039 0.97895 1.22051 0.99573
0.98789 0.97319 1.21304 0.89580 0.88039 0.99217 1.44354 1.32782
1.31804 1.23179 1.18721 0.93857 1.07610 1.19716 0.90020 1.25515
0.96540 0.97488 0.95649 1.70106 1.34019 1.36174 1.10598 0.87671
0.85938 0.79459 0.81904 1.21941 1.22254 1.18122 0.90298 0.91511
0.88544 0.79993 0.76016 0.92523 0.91213 0.92656 0.91647 0.92887
0.93234 0.93259 0.91954 0.95869 0.91643 0.92740
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.10 9.92 36.01 0.36 -0.74 16
2 C 0.13 2.27 7.26 -82.02 -0.60 1.67 16
3 N -0.31 -5.11 12.63 33.90 0.43 -4.68 16
4 N -0.47 -6.68 7.29 30.85 0.22 -6.46 16
5 H 0.44 4.61 8.96 -182.72 -1.64 2.97 16
6 C 0.11 1.76 11.52 -16.56 -0.19 1.57 16
7 C -0.28 -5.02 6.13 -105.07 -0.64 -5.67 16
8 C 0.59 11.73 7.81 -12.52 -0.10 11.63 16
9 O -0.56 -12.21 14.92 5.27 0.08 -12.13 16
10 N -0.69 -13.16 3.97 -61.38 -0.24 -13.41 16
11 C 0.14 2.54 4.44 -4.05 -0.02 2.52 16
12 C 0.16 2.77 2.99 -67.82 -0.20 2.57 16
13 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
14 C -0.13 -1.95 5.34 -26.83 -0.14 -2.09 16
15 C -0.11 -1.57 5.89 -26.69 -0.16 -1.73 16
16 C -0.14 -2.28 6.08 -26.61 -0.16 -2.44 16
17 C 0.14 2.85 4.55 -3.71 -0.02 2.83 16
18 N -0.60 -12.45 2.52 -165.03 -0.42 -12.86 16
19 C -0.27 -6.62 6.86 -15.06 -0.10 -6.73 16
20 H 0.08 2.26 6.46 -52.48 -0.34 1.92 16
21 C 0.05 1.30 4.79 -17.43 -0.08 1.21 16
22 N -0.87 -24.40 13.97 55.49 0.78 -23.62 16
23 Si 0.82 18.48 27.27 -169.99 -4.64 13.85 16
24 H -0.29 -6.12 6.81 56.52 0.38 -5.73 16
25 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16
26 H -0.26 -5.57 5.15 56.52 0.29 -5.28 16
27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.10 1.50 6.55 -51.93 -0.34 1.16 16
30 H 0.18 2.70 7.17 -52.49 -0.38 2.33 16
31 H 0.40 7.66 6.34 -40.82 -0.26 7.40 16
32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.07 1.44 7.39 -51.92 -0.38 1.05 16
34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
40 H 0.02 0.46 6.68 -51.93 -0.35 0.11 16
41 H 0.07 1.43 6.81 -51.93 -0.35 1.08 16
42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16
LS Contribution 331.30 15.07 4.99 4.99
Total: -1.00 -30.02 331.30 -8.38 -38.40
By element:
Atomic # 1 Polarization: 18.86 SS G_CDS: -7.53 Total: 11.33 kcal
Atomic # 6 Polarization: 6.66 SS G_CDS: -2.06 Total: 4.60 kcal
Atomic # 7 Polarization: -61.80 SS G_CDS: 0.77 Total: -61.04 kcal
Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal
Atomic # 14 Polarization: 18.48 SS G_CDS: -4.64 Total: 13.85 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -30.02 -8.38 -38.40 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024586516.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.935 kcal
(2) G-P(sol) polarization free energy of solvation -30.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds