Wall clock time and date at job start Tue Mar 31 2020 03:49:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30450 * 125.98838 * 2 1
4 4 N 1.39938 * 108.89326 * 179.97438 * 3 2 1
5 5 H 0.97001 * 125.74925 * 179.97438 * 4 3 2
6 6 C 1.34255 * 108.49407 * 359.75426 * 4 3 2
7 7 C 1.38040 * 107.41753 * 0.39110 * 6 4 3
8 8 C 1.47424 * 126.41801 * 179.87090 * 7 6 4
9 9 O 1.21605 * 120.00294 * 179.68916 * 8 7 6
10 10 N 1.34784 * 119.99957 * 359.68843 * 8 7 6
11 11 C 1.46493 * 120.00454 * 180.02562 * 10 8 7
12 12 C 1.53000 * 109.47389 * 180.02562 * 11 10 8
13 13 H 1.08993 * 109.70027 * 300.09385 * 12 11 10
14 14 C 1.52764 * 109.50929 * 179.97438 * 12 11 10
15 15 C 1.53042 * 109.38150 * 185.70346 * 14 12 11
16 16 C 1.53039 * 109.53368 * 61.24243 * 15 14 12
17 17 C 1.53190 * 109.31401 * 298.63133 * 16 15 14
18 18 N 1.46921 * 108.77469 * 54.63928 * 17 16 15
19 19 C 1.36937 * 120.63137 * 126.37127 * 18 17 16
20 20 H 1.08004 * 119.99759 * 218.59523 * 19 18 17
21 21 C 1.38815 * 120.00238 * 38.59335 * 19 18 17
22 22 N 1.31619 * 119.99983 * 215.45716 * 21 19 18
23 23 Si 1.86798 * 119.99585 * 35.45531 * 21 19 18
24 24 H 1.48501 * 109.46945 * 84.70707 * 23 21 19
25 25 H 1.48502 * 109.46943 * 204.70030 * 23 21 19
26 26 H 1.48497 * 109.47299 * 324.70485 * 23 21 19
27 27 H 1.08999 * 109.47086 * 270.04327 * 1 2 3
28 28 H 1.09000 * 109.47023 * 30.03780 * 1 2 3
29 29 H 1.09000 * 109.47030 * 150.03692 * 1 2 3
30 30 H 1.08000 * 126.29345 * 180.24020 * 6 4 3
31 31 H 0.97008 * 119.99400 * 0.02562 * 10 8 7
32 32 H 1.09001 * 109.46914 * 59.99356 * 11 10 8
33 33 H 1.09010 * 109.46890 * 300.00437 * 11 10 8
34 34 H 1.09007 * 109.56108 * 65.67042 * 14 12 11
35 35 H 1.09001 * 109.38679 * 305.63379 * 14 12 11
36 36 H 1.08993 * 109.46062 * 301.22206 * 15 14 12
37 37 H 1.09004 * 109.44563 * 181.25372 * 15 14 12
38 38 H 1.09007 * 109.49173 * 178.68031 * 16 15 14
39 39 H 1.08999 * 109.49967 * 58.58987 * 16 15 14
40 40 H 1.08999 * 109.58695 * 294.85142 * 17 16 15
41 41 H 1.09001 * 109.70501 * 174.49746 * 17 16 15
42 42 H 0.96995 * 119.99715 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2736 1.0555 0.0000
4 7 3.6111 0.6442 0.0006
5 1 4.3842 1.2300 0.0004
6 6 3.6439 -0.6980 0.0064
7 6 2.3373 -1.1432 0.0005
8 6 1.8915 -2.5485 0.0011
9 8 0.7039 -2.8096 0.0012
10 7 2.8004 -3.5438 0.0016
11 6 2.3575 -4.9402 0.0016
12 6 3.5783 -5.8624 0.0027
13 1 4.1823 -5.6736 -0.8847
14 6 3.1174 -7.3189 0.0034
15 6 4.3337 -8.2364 0.1480
16 6 5.0359 -7.9496 1.4772
17 6 5.5219 -6.4969 1.4903
18 7 4.3819 -5.6143 1.2075
19 6 4.0709 -4.5834 2.0535
20 1 3.0374 -4.3472 2.2596
21 6 5.0839 -3.8421 2.6462
22 7 4.9359 -3.3882 3.8727
23 14 6.6571 -3.4890 1.7029
24 1 6.4639 -2.2889 0.8498
25 1 7.7640 -3.2417 2.6615
26 1 6.9939 -4.6553 0.8477
27 1 -0.3633 0.0008 1.0277
28 1 -0.3633 0.8897 -0.5144
29 1 -0.3633 -0.8903 -0.5133
30 1 4.5297 -1.3158 0.0120
31 1 3.7478 -3.3354 0.0019
32 1 1.7581 -5.1312 -0.8886
33 1 1.7575 -5.1310 0.8914
34 1 2.6043 -7.5397 -0.9327
35 1 2.4367 -7.4826 0.8388
36 1 5.0253 -8.0550 -0.6746
37 1 4.0083 -9.2765 0.1263
38 1 5.8884 -8.6195 1.5903
39 1 4.3375 -8.1070 2.2991
40 1 6.2877 -6.3608 0.7267
41 1 5.9359 -6.2566 2.4697
42 1 5.6436 -2.8699 4.2867
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001024586516.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:49:04
Heat of formation + Delta-G solvation = 32.247788 kcal
Electronic energy + Delta-G solvation = -24549.320731 eV
Core-core repulsion = 21144.429979 eV
Total energy + Delta-G solvation = -3404.890751 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 292.164 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.39133 -40.36811 -39.18221 -35.69327 -34.81683 -33.93084 -32.72820 -32.40550
-31.03673 -28.95222 -27.63215 -26.29034 -24.06189 -23.89453 -22.30773 -21.37284
-20.95185 -20.54826 -19.45075 -18.32570 -17.39052 -17.06595 -16.57897 -16.45292
-16.15288 -15.43843 -15.21615 -15.07612 -14.89766 -14.71714 -14.65420 -14.27579
-13.91759 -13.77911 -13.71889 -13.43634 -13.13464 -12.97310 -12.74140 -12.57650
-12.26342 -12.02370 -12.00820 -11.59298 -11.46675 -11.18802 -11.15374 -10.70961
-10.52607 -10.39802 -10.00371 -9.59554 -8.57849 -8.14498 -5.38370 0.51429
1.10911 1.36708 1.50248 1.58974 1.76356 2.44063 2.55729 2.65888
3.00867 3.45850 3.52036 3.73312 3.99638 4.17535 4.19876 4.25179
4.35944 4.42222 4.48345 4.55724 4.62797 4.76769 4.79064 4.84057
4.93580 4.99089 5.02001 5.09737 5.14910 5.23556 5.34122 5.39019
5.40706 5.49077 5.68461 5.76113 6.00208 6.19184 6.38094 6.47810
6.84306 7.07042 7.47764 7.74725 8.23667 9.05105
Molecular weight = 292.16amu
Principal moments of inertia in cm(-1)
A = 0.016709 B = 0.006236 C = 0.005010
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1675.330183 B = 4488.757926 C = 5587.264224
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C 0.119 3.881
3 N -0.316 5.316
4 N -0.448 5.448
5 H 0.458 0.542
6 C 0.122 3.878
7 C -0.308 4.308
8 C 0.585 3.415
9 O -0.590 6.590
10 N -0.690 5.690
11 C 0.142 3.858
12 C 0.156 3.844
13 H 0.053 0.947
14 C -0.124 4.124
15 C -0.102 4.102
16 C -0.133 4.133
17 C 0.140 3.860
18 N -0.606 5.606
19 C -0.245 4.245
20 H 0.038 0.962
21 C 0.002 3.998
22 N -0.929 5.929
23 Si 0.885 3.115
24 H -0.264 1.264
25 H -0.317 1.317
26 H -0.240 1.240
27 H 0.079 0.921
28 H 0.091 0.909
29 H 0.084 0.916
30 H 0.197 0.803
31 H 0.404 0.596
32 H 0.077 0.923
33 H 0.036 0.964
34 H 0.086 0.914
35 H 0.047 0.953
36 H 0.067 0.933
37 H 0.074 0.926
38 H 0.073 0.927
39 H 0.043 0.957
40 H 0.034 0.966
41 H 0.035 0.965
42 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.032 -0.698 -11.813 11.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.049 4.049
3 N -0.140 5.140
4 N -0.155 5.155
5 H 0.306 0.694
6 C -0.032 4.032
7 C -0.323 4.323
8 C 0.373 3.627
9 O -0.473 6.473
10 N -0.339 5.339
11 C 0.018 3.982
12 C 0.051 3.949
13 H 0.071 0.929
14 C -0.163 4.163
15 C -0.140 4.140
16 C -0.172 4.172
17 C 0.015 3.985
18 N -0.332 5.332
19 C -0.375 4.375
20 H 0.055 0.945
21 C -0.196 4.196
22 N -0.571 5.571
23 Si 0.711 3.289
24 H -0.190 1.190
25 H -0.245 1.245
26 H -0.164 1.164
27 H 0.097 0.903
28 H 0.110 0.890
29 H 0.103 0.897
30 H 0.214 0.786
31 H 0.240 0.760
32 H 0.095 0.905
33 H 0.054 0.946
34 H 0.104 0.896
35 H 0.066 0.934
36 H 0.086 0.914
37 H 0.093 0.907
38 H 0.091 0.909
39 H 0.062 0.938
40 H 0.052 0.948
41 H 0.054 0.946
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 0.291 0.462 -11.700 11.713
hybrid contribution 1.824 0.000 0.645 1.935
sum 2.115 0.462 -11.055 11.265
Atomic orbital electron populations
1.20319 0.84725 1.04261 1.03684 1.22784 0.98308 0.88682 0.95103
1.77016 0.87073 1.22450 1.27469 1.46039 1.07740 1.05293 1.56391
0.69380 1.23409 0.99120 0.86059 0.94625 1.20398 0.93194 0.94460
1.24249 1.17436 0.85341 0.84370 0.75543 1.90634 1.17482 1.85001
1.54192 1.45695 1.09725 1.05706 1.72758 1.21228 0.96495 0.80174
1.00274 1.20942 0.90861 0.93772 0.89297 0.92923 1.21822 0.98168
0.94368 1.01983 1.21354 0.96717 0.99157 0.96769 1.21970 1.00241
0.96787 0.98212 1.21330 0.89363 0.89893 0.97875 1.44436 1.33474
1.31204 1.24070 1.18365 0.91822 1.08064 1.19222 0.94488 1.25948
0.99971 0.97886 0.95841 1.70237 1.35541 1.38730 1.12613 0.86725
0.81007 0.80820 0.80361 1.18970 1.24489 1.16419 0.90284 0.89043
0.89701 0.78613 0.75962 0.90502 0.94595 0.89573 0.93415 0.91392
0.90727 0.90869 0.93847 0.94774 0.94619 0.93294
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.09 9.92 71.24 0.71 -1.38 16
2 C 0.12 4.05 7.26 43.52 0.32 4.36 16
3 N -0.32 -10.03 12.63 -46.67 -0.59 -10.62 16
4 N -0.45 -11.98 7.29 -56.32 -0.41 -12.39 16
5 H 0.46 8.43 8.96 -213.42 -1.91 6.52 16
6 C 0.12 3.71 11.52 84.28 0.97 4.68 16
7 C -0.31 -11.14 6.13 -20.15 -0.12 -11.27 16
8 C 0.58 23.56 7.81 86.66 0.68 24.24 16
9 O -0.59 -26.27 14.92 -4.05 -0.06 -26.33 16
10 N -0.69 -26.19 3.97 -466.37 -1.85 -28.04 16
11 C 0.14 5.16 4.44 86.38 0.38 5.54 16
12 C 0.16 5.23 2.99 44.83 0.13 5.36 16
13 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
14 C -0.12 -3.45 5.34 30.53 0.16 -3.29 16
15 C -0.10 -2.57 5.89 30.62 0.18 -2.39 16
16 C -0.13 -4.07 6.08 30.67 0.19 -3.88 16
17 C 0.14 5.32 4.55 86.36 0.39 5.71 16
18 N -0.61 -24.82 2.52 -676.04 -1.70 -26.52 16
19 C -0.25 -12.23 6.86 84.03 0.58 -11.66 16
20 H 0.04 2.17 6.46 -2.91 -0.02 2.16 16
21 C 0.00 0.10 4.79 84.86 0.41 0.51 16
22 N -0.93 -54.05 13.97 21.65 0.30 -53.75 16
23 Si 0.88 37.86 27.27 68.60 1.87 39.73 16
24 H -0.26 -9.96 6.81 99.48 0.68 -9.28 16
25 H -0.32 -14.68 7.11 99.48 0.71 -13.97 16
26 H -0.24 -9.54 5.15 99.48 0.51 -9.02 16
27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16
28 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
29 H 0.08 2.68 6.55 -2.39 -0.02 2.66 16
30 H 0.20 5.35 7.17 -2.91 -0.02 5.33 16
31 H 0.40 14.97 6.34 -92.70 -0.59 14.39 16
32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
33 H 0.04 1.54 7.39 -2.38 -0.02 1.52 16
34 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16
35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
37 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16
38 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16
39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
40 H 0.03 1.24 6.68 -2.39 -0.02 1.22 16
41 H 0.04 1.55 6.81 -2.39 -0.02 1.53 16
42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16
Total: -1.00 -67.27 331.30 0.86 -66.41
By element:
Atomic # 1 Polarization: 36.63 SS G_CDS: -1.67 Total: 34.96 kcal
Atomic # 6 Polarization: 11.57 SS G_CDS: 4.97 Total: 16.55 kcal
Atomic # 7 Polarization: -127.06 SS G_CDS: -4.25 Total: -131.31 kcal
Atomic # 8 Polarization: -26.27 SS G_CDS: -0.06 Total: -26.33 kcal
Atomic # 14 Polarization: 37.86 SS G_CDS: 1.87 Total: 39.73 kcal
Total: -67.27 0.86 -66.41 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001024586516.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.656 kcal
(2) G-P(sol) polarization free energy of solvation -67.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.248 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds