Wall clock time and date at job start Tue Mar 31 2020 03:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30841 * 125.90142 * 2 1 4 4 N 1.40076 * 108.20708 * 180.25611 * 3 2 1 5 5 C 1.46503 * 126.03819 * 179.70043 * 4 3 2 6 6 C 1.34953 * 107.92773 * 359.72091 * 4 3 2 7 7 C 1.50700 * 126.12782 * 179.97438 * 6 4 3 8 8 C 1.35315 * 107.74086 * 359.97438 * 6 4 3 9 9 C 1.50702 * 126.03498 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.47477 * 90.00018 * 9 8 6 11 11 O 1.21281 * 119.99681 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00304 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00168 * 180.02562 * 12 10 9 14 14 C 1.53495 * 114.20561 * 155.00314 * 13 12 10 15 15 N 1.47064 * 87.98647 * 87.71568 * 14 13 12 16 16 C 1.36929 * 136.05710 * 207.07951 * 15 14 13 17 17 H 1.08003 * 120.00152 * 6.50021 * 16 15 14 18 18 C 1.38818 * 120.00175 * 186.49548 * 16 15 14 19 19 N 1.31615 * 119.99847 * 6.43003 * 18 16 15 20 20 Si 1.86802 * 119.99925 * 186.42380 * 18 16 15 21 21 H 1.48502 * 109.46990 * 265.01960 * 20 18 16 22 22 H 1.48491 * 109.47236 * 25.02406 * 20 18 16 23 23 H 1.48506 * 109.46777 * 145.02360 * 20 18 16 24 24 C 1.47067 * 87.88549 * 27.33957 * 15 14 13 25 25 H 1.08994 * 109.47404 * 270.21060 * 1 2 3 26 26 H 1.08998 * 109.46855 * 30.21436 * 1 2 3 27 27 H 1.09001 * 109.46778 * 150.20547 * 1 2 3 28 28 H 1.09002 * 109.46972 * 270.02502 * 5 4 3 29 29 H 1.08995 * 109.46978 * 30.02688 * 5 4 3 30 30 H 1.09003 * 109.47281 * 150.02275 * 5 4 3 31 31 H 1.08994 * 109.47327 * 270.02777 * 7 6 4 32 32 H 1.08997 * 109.46886 * 30.03270 * 7 6 4 33 33 H 1.09003 * 109.46912 * 150.02690 * 7 6 4 34 34 H 1.09003 * 109.47290 * 329.99533 * 9 8 6 35 35 H 1.09002 * 109.46734 * 209.99902 * 9 8 6 36 36 H 0.97000 * 119.99413 * 359.97438 * 12 10 9 37 37 H 1.08998 * 113.27803 * 21.92842 * 13 12 10 38 38 H 1.08996 * 113.46596 * 332.93466 * 14 13 12 39 39 H 1.09007 * 113.51449 * 202.50716 * 14 13 12 40 40 H 0.97003 * 120.00226 * 179.97438 * 19 18 16 41 41 H 1.09005 * 113.46771 * 87.43754 * 24 15 14 42 42 H 1.09002 * 113.46911 * 217.87594 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0059 5 6 4.7899 1.5008 -0.0141 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5989 -0.0082 8 6 2.3271 -1.1330 0.0047 9 6 1.8600 -2.5657 0.0108 10 6 1.7119 -3.0399 1.4335 11 8 1.9608 -2.2882 2.3522 12 7 1.3020 -4.2989 1.6851 13 6 1.1575 -4.7597 3.0682 14 6 0.1596 -5.9123 3.2466 15 7 1.2651 -6.8429 2.9731 16 6 1.3859 -8.1067 2.4602 17 1 0.5220 -8.6073 2.0485 18 6 2.6189 -8.7445 2.4692 19 7 3.6425 -8.1893 3.0826 20 14 2.8250 -10.3909 1.6111 21 1 2.6474 -11.4881 2.5959 22 1 1.8078 -10.5201 0.5371 23 1 4.1841 -10.4732 1.0182 24 6 2.1830 -5.8212 3.4989 25 1 -0.3634 0.0038 1.0276 26 1 -0.3633 0.8881 -0.5172 27 1 -0.3633 -0.8918 -0.5107 28 1 5.0772 1.7136 -1.0439 29 1 4.5591 2.4342 0.4991 30 1 5.6121 0.9992 0.4962 31 1 5.1240 -1.8136 -1.0370 32 1 5.6538 -1.0902 0.5005 33 1 4.6103 -2.5321 0.5083 34 1 2.5906 -3.1884 -0.5056 35 1 0.8984 -2.6364 -0.4977 36 1 1.1019 -4.8997 0.9503 37 1 1.0329 -3.9459 3.7826 38 1 -0.6218 -5.9313 2.4870 39 1 -0.2352 -5.9929 4.2595 40 1 4.5040 -8.6352 3.0893 41 1 2.3223 -5.8772 4.5786 42 1 3.1254 -5.7627 2.9543 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030755334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:01 Heat of formation + Delta-G solvation = 68.993199 kcal Electronic energy + Delta-G solvation = -23414.370831 eV Core-core repulsion = 20011.073480 eV Total energy + Delta-G solvation = -3403.297351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35193 -40.82555 -39.15034 -35.19761 -34.84772 -33.99907 -33.54670 -30.72781 -30.21680 -29.33998 -27.20638 -26.35883 -25.87154 -24.83648 -22.06160 -20.89190 -20.49595 -20.28586 -18.70806 -18.01058 -17.39414 -16.89800 -16.71187 -16.45320 -16.08714 -15.60427 -15.19258 -14.80037 -14.63689 -14.48515 -14.40560 -14.13851 -13.92255 -13.82403 -13.40856 -13.32412 -13.23793 -13.03004 -12.78466 -12.76303 -12.71245 -12.52254 -12.38403 -12.04681 -11.75429 -11.40537 -11.23994 -10.94323 -10.75333 -9.94781 -9.79176 -9.18531 -8.92432 -7.89200 -5.22257 0.91947 1.49537 1.50381 1.60065 1.63971 1.72684 1.82013 2.49940 2.51209 3.33592 3.48787 3.59327 3.74932 3.86600 4.03622 4.13198 4.26733 4.33861 4.39310 4.42457 4.55738 4.57806 4.61919 4.65067 4.70416 4.73374 4.83595 4.86838 4.96151 5.01252 5.06567 5.17629 5.18785 5.24566 5.30846 5.49794 5.79936 5.81141 5.91870 6.18598 6.80001 6.81017 6.91545 7.46240 7.62233 8.62486 9.29380 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.003573 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.743174 B = 7834.415451 C = 8415.765713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.075 3.925 3 N -0.338 5.338 4 N -0.382 5.382 5 C 0.094 3.906 6 C 0.091 3.909 7 C -0.091 4.091 8 C -0.239 4.239 9 C -0.050 4.050 10 C 0.514 3.486 11 O -0.583 6.583 12 N -0.690 5.690 13 C 0.111 3.889 14 C 0.114 3.886 15 N -0.631 5.631 16 C -0.226 4.226 17 H 0.092 0.908 18 C -0.066 4.066 19 N -0.955 5.955 20 Si 0.979 3.021 21 H -0.292 1.292 22 H -0.261 1.261 23 H -0.297 1.297 24 C 0.145 3.855 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.411 0.589 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.247 0.753 41 H 0.019 0.981 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 15.927 -10.570 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.164 5.164 5 C -0.046 4.046 6 C -0.037 4.037 7 C -0.149 4.149 8 C -0.250 4.250 9 C -0.091 4.091 10 C 0.303 3.697 11 O -0.462 6.462 12 N -0.340 5.340 13 C 0.004 3.996 14 C -0.011 4.011 15 N -0.357 5.357 16 C -0.354 4.354 17 H 0.109 0.891 18 C -0.259 4.259 19 N -0.604 5.604 20 Si 0.807 3.193 21 H -0.220 1.220 22 H -0.185 1.185 23 H -0.224 1.224 24 C 0.018 3.982 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.103 17.557 -10.033 20.252 hybrid contribution 0.542 -2.124 0.105 2.194 sum -0.561 15.434 -9.927 18.359 Atomic orbital electron populations 1.20260 0.85250 1.04391 1.03076 1.22607 0.98034 0.90216 0.98161 1.77164 0.87343 1.23490 1.28115 1.48542 1.05803 1.04595 1.57498 1.22121 0.83208 0.94695 1.04610 1.21271 0.97740 0.84984 0.99725 1.20539 0.92290 0.97536 1.04534 1.19285 0.91798 0.95224 1.18738 1.19903 1.05346 0.91843 0.91973 1.21274 0.75202 0.80699 0.92561 1.90648 1.51497 1.55871 1.48216 1.45458 1.67646 1.13191 1.07742 1.22207 0.97748 0.94900 0.84745 1.22872 0.92234 0.86494 0.99530 1.46098 1.04179 1.14160 1.71285 1.19386 0.95227 0.90448 1.30320 0.89081 1.25661 0.96166 1.02174 1.01914 1.70059 1.01374 1.40856 1.48092 0.85061 0.76969 0.79088 0.78189 1.21967 1.18540 1.22353 1.22444 0.94582 0.85944 0.95240 0.91082 0.90165 0.88522 0.89052 0.89253 0.87768 0.87804 0.89642 0.91015 0.86863 0.85563 0.75314 0.88295 0.91363 0.92711 0.94445 0.96369 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.26 71.24 0.73 -0.76 16 2 C 0.08 2.11 7.22 43.10 0.31 2.42 16 3 N -0.34 -10.16 12.58 -47.38 -0.60 -10.76 16 4 N -0.38 -9.78 4.01 -356.02 -1.43 -11.21 16 5 C 0.09 1.44 11.27 127.77 1.44 2.88 16 6 C 0.09 2.35 6.93 41.40 0.29 2.63 16 7 C -0.09 -1.77 9.72 71.24 0.69 -1.08 16 8 C -0.24 -6.53 4.59 -20.14 -0.09 -6.62 16 9 C -0.05 -1.18 5.61 29.10 0.16 -1.02 16 10 C 0.51 16.40 7.82 87.66 0.69 17.09 16 11 O -0.58 -23.47 15.63 -3.03 -0.05 -23.52 16 12 N -0.69 -22.39 5.40 -441.53 -2.39 -24.78 16 13 C 0.11 4.19 4.61 45.55 0.21 4.40 16 14 C 0.11 4.32 8.44 83.18 0.70 5.02 16 15 N -0.63 -30.89 3.76 -738.02 -2.78 -33.66 16 16 C -0.23 -12.07 10.73 84.04 0.90 -11.17 16 17 H 0.09 4.57 7.84 -2.91 -0.02 4.54 16 18 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 19 N -0.96 -57.33 11.81 21.65 0.26 -57.07 16 20 Si 0.98 44.26 29.56 68.60 2.03 46.29 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 24 C 0.15 6.98 7.06 83.27 0.59 7.57 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.55 7.25 -2.39 -0.02 1.53 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.17 7.05 -2.39 -0.02 1.15 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.37 7.08 -2.39 -0.02 1.35 16 33 H 0.07 1.66 7.77 -2.39 -0.02 1.64 16 34 H 0.11 2.29 7.77 -2.39 -0.02 2.27 16 35 H 0.13 2.20 7.25 -2.39 -0.02 2.19 16 36 H 0.41 12.17 8.76 -92.71 -0.81 11.36 16 37 H 0.10 3.69 7.45 -2.39 -0.02 3.67 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.03 1.57 7.57 -2.39 -0.02 1.55 16 Total: -1.00 -77.64 353.08 2.35 -75.29 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.22 Total: 21.25 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 7.09 Total: 18.18 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -6.93 Total: -137.49 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.64 2.35 -75.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030755334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.280 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds