Wall clock time and date at job start Tue Mar 31 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00121 * 2 1 4 4 H 1.08999 * 109.86543 * 358.99325 * 3 2 1 5 5 O 1.43737 * 109.87899 * 237.83135 * 3 2 1 6 6 C 1.44376 * 106.97417 * 267.08509 * 5 3 2 7 7 C 1.55220 * 103.57165 * 320.01173 * 6 5 3 8 8 C 1.54097 * 109.87876 * 119.99460 * 3 2 1 9 9 H 1.08998 * 110.49027 * 358.59226 * 8 3 2 10 10 C 1.50702 * 110.49267 * 236.06954 * 8 3 2 11 11 O 1.21286 * 119.99734 * 1.85056 * 10 8 3 12 12 N 1.34768 * 120.00137 * 181.84511 * 10 8 3 13 13 C 1.47873 * 126.94929 * 0.03053 * 12 10 8 14 14 C 1.56017 * 105.10611 * 181.99864 * 13 12 10 15 15 H 1.09004 * 116.24435 * 158.83833 * 14 13 12 16 16 C 1.57085 * 99.60739 * 32.80533 * 14 13 12 17 17 C 1.49291 * 126.94314 * 180.02562 * 12 10 8 18 18 H 1.09000 * 116.78967 * 16.30189 * 17 12 10 19 19 C 1.56024 * 104.09172 * 246.70009 * 17 12 10 20 20 N 1.47871 * 105.10280 * 288.76746 * 19 17 12 21 21 C 1.36936 * 126.94437 * 182.02548 * 20 19 17 22 22 H 1.07996 * 119.99987 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00161 * 359.96908 * 21 20 19 24 24 N 1.31626 * 119.99798 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00289 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47197 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47453 * 120.00190 * 25 23 21 28 28 H 1.48501 * 109.47432 * 240.00404 * 25 23 21 29 29 H 1.07998 * 120.00210 * 359.97438 * 1 2 3 30 30 H 1.08003 * 119.99721 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.00149 * 179.97438 * 2 1 3 32 32 H 1.09006 * 110.61930 * 78.44522 * 6 5 3 33 33 H 1.09007 * 110.61715 * 201.27839 * 6 5 3 34 34 H 1.08997 * 110.89309 * 278.75375 * 7 6 5 35 35 H 1.08997 * 111.02696 * 155.06866 * 7 6 5 36 36 H 1.08998 * 110.31267 * 63.08982 * 13 12 10 37 37 H 1.08996 * 110.31185 * 300.90973 * 13 12 10 38 38 H 1.09007 * 112.36613 * 64.27171 * 16 14 13 39 39 H 1.08995 * 112.36792 * 191.71326 * 16 14 13 40 40 H 1.09006 * 110.31578 * 47.67339 * 19 17 12 41 41 H 1.08999 * 110.31642 * 169.85787 * 19 17 12 42 42 H 0.96994 * 119.99594 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0180 5 8 2.9312 1.3685 -1.1442 6 6 4.2185 0.8669 -0.7253 7 6 4.3958 1.4617 0.6975 8 6 2.9529 1.3966 1.2551 9 1 2.8246 0.5121 1.8790 10 6 2.6334 2.6439 2.0383 11 8 1.7516 3.3868 1.6622 12 7 3.3276 2.9337 3.1565 13 6 4.4265 2.1425 3.7507 14 6 4.8225 2.9090 5.0506 15 1 5.3491 2.3305 5.8098 16 6 3.4171 3.4822 5.4554 17 6 3.1424 4.1185 4.0457 18 1 2.2114 4.6745 3.9359 19 6 4.4593 4.9362 3.8681 20 7 5.5015 4.1418 4.5531 21 6 6.8224 4.4708 4.7017 22 1 7.4895 3.8031 5.2265 23 6 7.3041 5.6626 4.1776 24 7 6.4909 6.4766 3.5384 25 14 9.1061 6.1111 4.3796 26 1 9.8027 5.0358 5.1304 27 1 9.7311 6.2645 3.0413 28 1 9.2174 7.3893 5.1274 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9354 0.0004 32 1 4.2119 -0.2224 -0.6860 33 1 5.0042 1.2209 -1.3930 34 1 4.7470 2.4923 0.6470 35 1 5.0717 0.8505 1.2954 36 1 5.2730 2.0967 3.0656 37 1 4.0808 1.1379 3.9940 38 1 2.7036 2.6958 5.7017 39 1 3.4864 4.2327 6.2429 40 1 4.6990 5.0426 2.8100 41 1 4.3622 5.9162 4.3353 42 1 6.8274 7.3095 3.1725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032638049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:52 Heat of formation + Delta-G solvation = 3.123324 kcal Electronic energy + Delta-G solvation = -24595.148459 eV Core-core repulsion = 21156.702025 eV Total energy + Delta-G solvation = -3438.446434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58165 -39.35998 -37.48567 -33.83750 -33.69106 -32.49422 -31.16284 -29.08866 -28.62651 -28.38191 -25.27521 -24.20582 -23.14262 -22.06260 -20.45004 -19.87163 -19.83747 -18.49033 -17.40780 -16.56239 -16.46305 -15.84057 -15.75065 -15.19160 -14.61803 -14.38158 -13.97975 -13.81249 -13.46860 -13.15864 -13.03346 -12.27285 -12.14168 -11.99148 -11.82149 -11.73474 -11.46091 -11.37411 -11.22946 -11.04499 -10.94015 -10.87859 -10.79354 -10.63271 -10.27324 -10.08947 -9.73191 -9.68685 -9.61880 -9.33537 -8.74889 -8.05352 -6.97219 -5.80770 -3.15709 2.09044 2.95449 3.29220 3.34299 3.39240 3.42630 4.03114 4.37934 4.50434 4.57656 4.67901 4.98019 5.06602 5.06926 5.14061 5.17063 5.27200 5.31830 5.44945 5.51715 5.58888 5.68881 5.69755 5.73234 5.75384 5.86589 5.99396 6.08771 6.13700 6.24234 6.36366 6.44393 6.45103 6.54721 6.64179 6.65797 6.87299 7.38552 7.44638 7.68194 8.03268 8.06789 8.51499 9.06045 9.67020 10.35790 11.31269 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021610 B = 0.004679 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.388298 B = 5982.581295 C = 6577.383227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C 0.112 3.888 4 H 0.121 0.879 5 O -0.363 6.363 6 C 0.046 3.954 7 C -0.142 4.142 8 C -0.130 4.130 9 H 0.105 0.895 10 C 0.537 3.463 11 O -0.552 6.552 12 N -0.602 5.602 13 C 0.082 3.918 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.097 3.903 18 H 0.114 0.886 19 C 0.175 3.825 20 N -0.596 5.596 21 C -0.233 4.233 22 H 0.081 0.919 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -13.696 -2.152 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.054 3.946 4 H 0.138 0.862 5 O -0.282 6.282 6 C -0.031 4.031 7 C -0.180 4.180 8 C -0.151 4.151 9 H 0.123 0.877 10 C 0.325 3.675 11 O -0.431 6.431 12 N -0.334 5.334 13 C -0.043 4.043 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.192 4.192 17 C -0.005 4.005 18 H 0.131 0.869 19 C 0.050 3.950 20 N -0.321 5.321 21 C -0.361 4.361 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.316 -13.026 -2.708 15.183 hybrid contribution 1.121 0.085 0.272 1.157 sum -6.194 -12.941 -2.436 14.553 Atomic orbital electron populations 1.23898 0.95812 1.02136 0.98985 1.23316 0.96459 0.98399 1.01055 1.21899 0.92318 0.96601 0.83807 0.86172 1.88964 1.21466 1.84853 1.32892 1.23616 0.86486 0.97967 0.95009 1.23195 0.94631 1.03789 0.96403 1.22586 0.96957 0.98000 0.97605 0.87694 1.19718 0.81202 0.86658 0.79894 1.90642 1.32802 1.51436 1.68252 1.49125 1.34761 1.25488 1.24053 1.23375 0.89145 0.93604 0.98218 1.23161 0.91597 0.89655 0.92442 0.87592 1.24172 0.98167 1.00348 0.96485 1.24340 1.00643 0.87721 0.87839 0.86857 1.21925 0.82924 0.92719 0.97473 1.45234 1.05567 1.17531 1.63728 1.19085 0.83087 1.02853 1.31041 0.90101 1.24821 0.98092 0.97062 1.00196 1.69929 1.33421 1.12014 1.41106 0.86053 0.84286 0.78108 0.77310 1.20458 1.21763 1.21713 0.88077 0.88234 0.87336 0.92198 0.88643 0.89431 0.89267 0.90789 0.92959 0.91691 0.89747 0.93459 0.92617 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 14.32 29.02 0.42 -1.41 16 2 C -0.17 -2.04 8.87 -36.02 -0.32 -2.35 16 3 C 0.11 1.61 3.45 -27.31 -0.09 1.51 16 4 H 0.12 2.01 6.11 -51.93 -0.32 1.69 16 5 O -0.36 -5.52 11.18 -35.23 -0.39 -5.91 16 6 C 0.05 0.55 7.66 38.33 0.29 0.85 16 7 C -0.14 -1.89 5.34 -24.59 -0.13 -2.03 16 8 C -0.13 -1.84 2.56 -90.24 -0.23 -2.07 16 9 H 0.11 1.26 7.69 -51.93 -0.40 0.86 16 10 C 0.54 9.68 7.13 -10.99 -0.08 9.60 16 11 O -0.55 -11.66 15.62 5.55 0.09 -11.57 16 12 N -0.60 -10.77 2.95 -156.78 -0.46 -11.23 16 13 C 0.08 1.32 5.54 -1.67 -0.01 1.31 16 14 C 0.14 2.50 5.53 -62.56 -0.35 2.15 16 15 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 16 C -0.15 -2.50 6.81 -22.30 -0.15 -2.65 16 17 C 0.10 1.85 5.23 -62.55 -0.33 1.52 16 18 H 0.11 2.12 8.08 -51.93 -0.42 1.70 16 19 C 0.17 4.12 4.76 -1.67 -0.01 4.11 16 20 N -0.60 -13.91 3.02 -156.34 -0.47 -14.39 16 21 C -0.23 -6.04 10.37 -15.06 -0.16 -6.19 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 24 N -0.92 -26.40 10.56 55.49 0.59 -25.82 16 25 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H 0.10 1.11 7.85 -52.49 -0.41 0.70 16 30 H 0.10 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.11 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.43 7.86 -51.93 -0.41 1.02 16 35 H 0.09 1.01 7.60 -51.93 -0.39 0.62 16 36 H 0.07 1.28 6.81 -51.93 -0.35 0.93 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 41 H 0.06 1.46 7.46 -51.93 -0.39 1.07 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -31.25 335.51 -8.28 -39.53 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.42 Total: 3.87 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.24 Total: 4.13 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.35 Total: -51.43 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.31 Total: -17.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.25 -8.28 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032638049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.650 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds