Wall clock time and date at job start Tue Mar 31 2020 04:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35362 * 127.24413 * 2 1 4 4 N 1.35040 * 107.22631 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.88307 * 180.02562 * 4 3 2 6 6 N 1.28464 * 110.22974 * 359.72117 * 4 3 2 7 7 C 1.31810 * 110.07227 * 0.45827 * 6 4 3 8 8 C 1.47714 * 126.51372 * 179.81592 * 7 6 4 9 9 O 1.21575 * 119.99407 * 185.96951 * 8 7 6 10 10 N 1.34770 * 120.00447 * 5.70218 * 8 7 6 11 11 C 1.46936 * 120.62810 * 6.94406 * 10 8 7 12 12 C 1.53622 * 108.53954 * 126.37370 * 11 10 8 13 13 C 1.53038 * 109.24471 * 54.85757 * 12 11 10 14 14 H 1.09001 * 109.45642 * 178.48907 * 13 12 11 15 15 N 1.46495 * 109.46151 * 58.53036 * 13 12 11 16 16 C 1.36933 * 120.00476 * 84.93024 * 15 13 12 17 17 H 1.08004 * 119.99636 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00343 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00171 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47452 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46869 * 120.00191 * 20 18 16 23 23 H 1.48496 * 109.47271 * 239.99802 * 20 18 16 24 24 C 1.53042 * 109.53683 * 298.50684 * 13 12 11 25 25 H 1.08999 * 109.49861 * 301.41480 * 24 13 12 26 26 C 1.52998 * 109.49800 * 181.31506 * 24 13 12 27 27 C 1.46921 * 120.63456 * 187.22820 * 10 8 7 28 28 H 1.08998 * 109.47050 * 270.02362 * 1 2 3 29 29 H 1.08994 * 109.47260 * 30.02525 * 1 2 3 30 30 H 1.08998 * 109.46975 * 150.03077 * 1 2 3 31 31 H 1.08001 * 126.39010 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.58218 * 246.20493 * 11 10 8 33 33 H 1.09000 * 109.58639 * 6.62896 * 11 10 8 34 34 H 1.08997 * 109.63291 * 294.86017 * 12 11 10 35 35 H 1.08999 * 109.42757 * 174.72459 * 12 11 10 36 36 H 0.97006 * 120.00156 * 264.93310 * 15 13 12 37 37 H 0.96998 * 120.00016 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.47448 * 300.16480 * 26 24 13 39 39 H 1.09003 * 109.46698 * 60.16733 * 26 24 13 40 40 H 1.08999 * 109.47174 * 180.15943 * 26 24 13 41 41 H 1.08999 * 109.58693 * 353.37041 * 27 10 8 42 42 H 1.09003 * 109.58956 * 113.79130 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 0.0006 5 1 4.3887 1.1730 0.0011 6 7 3.5998 -0.6693 0.0068 7 6 2.3635 -1.1263 0.0007 8 6 1.9507 -2.5446 0.0010 9 8 0.7760 -2.8357 -0.1146 10 7 2.8767 -3.5160 0.1238 11 6 4.2787 -3.1819 0.4099 12 6 4.7270 -3.9744 1.6472 13 6 4.4721 -5.4648 1.4112 14 1 4.8137 -6.0331 2.2764 15 7 5.2040 -5.9026 0.2201 16 6 6.5174 -6.2763 0.3222 17 1 7.0138 -6.2479 1.2810 18 6 7.2107 -6.6916 -0.8063 19 7 6.6059 -6.7257 -1.9748 20 14 9.0022 -7.2020 -0.6667 21 1 9.4445 -7.0750 0.7452 22 1 9.1507 -8.6126 -1.1065 23 1 9.8354 -6.3248 -1.5277 24 6 2.9742 -5.7014 1.2049 25 1 2.4268 -5.3532 2.0808 26 6 2.7165 -7.1958 1.0017 27 6 2.5049 -4.9288 -0.0319 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5133 31 1 2.0220 2.1138 -0.0004 32 1 4.9000 -3.4506 -0.4444 33 1 4.3669 -2.1134 0.6069 34 1 4.1632 -3.6424 2.5189 35 1 5.7910 -3.8098 1.8173 36 1 4.7582 -5.9277 -0.6411 37 1 7.0905 -7.0155 -2.7634 38 1 3.2653 -7.5435 0.1265 39 1 3.0505 -7.7451 1.8819 40 1 1.6499 -7.3635 0.8520 41 1 1.4223 -5.0134 -0.1265 42 1 2.9845 -5.3371 -0.9215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036028316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:00 Heat of formation + Delta-G solvation = 58.957685 kcal Electronic energy + Delta-G solvation = -24332.304845 eV Core-core repulsion = 20928.572321 eV Total energy + Delta-G solvation = -3403.732523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.73038 -39.63100 -37.50527 -34.24410 -33.06415 -32.85445 -31.33820 -31.10751 -29.07163 -27.21524 -26.37990 -25.12284 -23.52453 -22.86597 -21.58817 -20.75416 -19.35311 -18.41703 -17.81883 -17.23889 -16.57244 -15.86957 -15.51557 -14.81068 -14.35127 -14.25818 -13.91035 -13.76699 -13.25078 -13.18861 -13.14758 -12.94402 -12.75680 -12.46049 -12.34239 -11.94575 -11.47535 -11.28501 -11.13215 -10.90626 -10.79238 -10.68960 -10.40223 -10.11722 -10.00908 -9.75290 -9.60553 -9.48320 -9.35578 -8.91908 -8.83087 -8.06783 -6.90917 -5.74311 -3.01937 1.63262 2.05938 2.77672 3.42573 3.43803 3.49875 3.51769 3.60489 4.46837 4.61442 4.69109 5.04840 5.20633 5.36853 5.43770 5.47196 5.49020 5.71618 5.72483 5.76196 5.83686 5.93061 6.00910 6.03256 6.12924 6.16501 6.24242 6.35762 6.42256 6.51724 6.58190 6.61344 6.73973 6.81623 6.87281 6.97330 7.04376 7.17159 7.73421 7.74640 7.93095 8.44451 8.49821 9.55955 10.14046 10.49279 11.48405 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004587 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.404225 B = 6102.090258 C = 6953.522203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.149 4.149 3 C -0.023 4.023 4 N -0.388 5.388 5 H 0.445 0.555 6 N -0.249 5.249 7 C -0.003 4.003 8 C 0.596 3.404 9 O -0.546 6.546 10 N -0.586 5.586 11 C 0.094 3.906 12 C -0.148 4.148 13 C 0.178 3.822 14 H 0.049 0.951 15 N -0.718 5.718 16 C -0.234 4.234 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.108 4.108 25 H 0.065 0.935 26 C -0.137 4.137 27 C 0.119 3.881 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.384 0.616 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 15.080 5.522 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C -0.167 4.167 4 N -0.101 5.101 5 H 0.289 0.711 6 N -0.085 5.085 7 C -0.163 4.163 8 C 0.383 3.617 9 O -0.423 6.423 10 N -0.317 5.317 11 C -0.028 4.028 12 C -0.189 4.189 13 C 0.067 3.933 14 H 0.067 0.933 15 N -0.360 5.360 16 C -0.365 4.365 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.735 3.265 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.221 1.221 24 C -0.128 4.128 25 H 0.084 0.916 26 C -0.195 4.195 27 C -0.003 4.003 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.198 0.802 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.219 0.781 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.658 14.484 5.507 17.751 hybrid contribution 0.853 0.390 -0.261 0.974 sum -7.805 14.875 5.246 17.598 Atomic orbital electron populations 1.20177 0.88188 1.03133 1.02226 1.20376 0.97541 0.90458 1.07533 1.22669 0.84343 1.00379 1.09287 1.43471 1.08477 1.04857 1.53256 0.71095 1.73598 1.22653 0.93099 1.19116 1.21989 0.89286 0.95303 1.09771 1.16976 0.85103 0.82623 0.77037 1.90711 1.17012 1.82469 1.52144 1.47979 1.09637 1.06140 1.67942 1.22498 0.79695 1.01599 0.99058 1.22584 1.01023 0.99173 0.96120 1.20235 0.89369 0.91927 0.91742 0.93321 1.42472 1.09916 1.78417 1.05243 1.19272 0.87459 1.35782 0.93986 0.91257 1.24686 0.98019 1.02613 0.95544 1.69660 1.35866 1.54175 0.98432 0.86178 0.85443 0.77860 0.77066 1.20678 1.22027 1.22066 1.21694 0.97781 0.95842 0.97445 0.91622 1.21665 1.00098 0.94664 1.03039 1.21691 1.00971 0.79006 0.98629 0.91655 0.92154 0.89668 0.80152 0.90203 0.87053 0.93672 0.91044 0.78111 0.93657 0.91056 0.92873 0.93760 0.89714 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.99 36.01 0.36 -0.52 16 2 C -0.15 -1.88 6.25 -104.41 -0.65 -2.53 16 3 C -0.02 -0.20 11.97 -17.17 -0.21 -0.41 16 4 N -0.39 -3.76 6.83 30.47 0.21 -3.55 16 5 H 0.44 2.54 8.96 -190.44 -1.71 0.84 16 6 N -0.25 -3.50 8.69 33.42 0.29 -3.21 16 7 C 0.00 -0.04 6.84 -82.77 -0.57 -0.61 16 8 C 0.60 10.76 7.69 -12.39 -0.10 10.66 16 9 O -0.55 -10.62 14.51 5.30 0.08 -10.55 16 10 N -0.59 -10.60 2.97 -173.66 -0.52 -11.11 16 11 C 0.09 1.71 5.89 -3.48 -0.02 1.69 16 12 C -0.15 -2.68 5.79 -26.39 -0.15 -2.83 16 13 C 0.18 3.49 2.53 -67.89 -0.17 3.32 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 N -0.72 -17.09 3.63 -53.39 -0.19 -17.28 16 16 C -0.23 -6.24 9.93 -15.06 -0.15 -6.39 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 20 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C -0.11 -1.87 2.67 -90.50 -0.24 -2.11 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 C -0.14 -2.29 9.06 37.16 0.34 -1.95 16 27 C 0.12 2.15 5.43 -3.71 -0.02 2.13 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.14 6.62 -51.93 -0.34 0.79 16 31 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.08 1.69 7.74 -51.93 -0.40 1.29 16 33 H 0.11 1.88 4.14 -73.61 -0.31 1.57 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.38 9.79 5.92 -40.82 -0.24 9.54 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.50 7.00 -51.93 -0.36 1.13 16 42 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -32.37 333.90 -8.52 -40.89 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.45 Total: 9.56 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.67 Total: 0.00 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.51 Total: -62.03 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.37 -8.52 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.850 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds