Wall clock time and date at job start Tue Mar 31 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35362 * 127.24413 * 2 1 4 4 N 1.35040 * 107.22631 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.88307 * 180.02562 * 4 3 2 6 6 N 1.28464 * 110.22974 * 359.72117 * 4 3 2 7 7 C 1.31810 * 110.07227 * 0.45827 * 6 4 3 8 8 C 1.47714 * 126.51372 * 179.81592 * 7 6 4 9 9 O 1.21575 * 119.99407 * 185.96951 * 8 7 6 10 10 N 1.34770 * 120.00447 * 5.70218 * 8 7 6 11 11 C 1.46936 * 120.62810 * 6.94406 * 10 8 7 12 12 C 1.53622 * 108.53954 * 126.37370 * 11 10 8 13 13 C 1.53038 * 109.24471 * 54.85757 * 12 11 10 14 14 H 1.09001 * 109.45642 * 178.48907 * 13 12 11 15 15 N 1.46495 * 109.46151 * 58.53036 * 13 12 11 16 16 C 1.36933 * 120.00476 * 84.93024 * 15 13 12 17 17 H 1.08004 * 119.99636 * 359.97438 * 16 15 13 18 18 C 1.38810 * 120.00343 * 179.97438 * 16 15 13 19 19 N 1.31614 * 120.00171 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99832 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47452 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46869 * 120.00191 * 20 18 16 23 23 H 1.48496 * 109.47271 * 239.99802 * 20 18 16 24 24 C 1.53042 * 109.53683 * 298.50684 * 13 12 11 25 25 H 1.08999 * 109.49861 * 301.41480 * 24 13 12 26 26 C 1.52998 * 109.49800 * 181.31506 * 24 13 12 27 27 C 1.46921 * 120.63456 * 187.22820 * 10 8 7 28 28 H 1.08998 * 109.47050 * 270.02362 * 1 2 3 29 29 H 1.08994 * 109.47260 * 30.02525 * 1 2 3 30 30 H 1.08998 * 109.46975 * 150.03077 * 1 2 3 31 31 H 1.08001 * 126.39010 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.58218 * 246.20493 * 11 10 8 33 33 H 1.09000 * 109.58639 * 6.62896 * 11 10 8 34 34 H 1.08997 * 109.63291 * 294.86017 * 12 11 10 35 35 H 1.08999 * 109.42757 * 174.72459 * 12 11 10 36 36 H 0.97006 * 120.00156 * 264.93310 * 15 13 12 37 37 H 0.96998 * 120.00016 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.47448 * 300.16480 * 26 24 13 39 39 H 1.09003 * 109.46698 * 60.16733 * 26 24 13 40 40 H 1.08999 * 109.47174 * 180.15943 * 26 24 13 41 41 H 1.08999 * 109.58693 * 353.37041 * 27 10 8 42 42 H 1.09003 * 109.58956 * 113.79130 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 0.0006 5 1 4.3887 1.1730 0.0011 6 7 3.5998 -0.6693 0.0068 7 6 2.3635 -1.1263 0.0007 8 6 1.9507 -2.5446 0.0010 9 8 0.7760 -2.8357 -0.1146 10 7 2.8767 -3.5160 0.1238 11 6 4.2787 -3.1819 0.4099 12 6 4.7270 -3.9744 1.6472 13 6 4.4721 -5.4648 1.4112 14 1 4.8137 -6.0331 2.2764 15 7 5.2040 -5.9026 0.2201 16 6 6.5174 -6.2763 0.3222 17 1 7.0138 -6.2479 1.2810 18 6 7.2107 -6.6916 -0.8063 19 7 6.6059 -6.7257 -1.9748 20 14 9.0022 -7.2020 -0.6667 21 1 9.4445 -7.0750 0.7452 22 1 9.1507 -8.6126 -1.1065 23 1 9.8354 -6.3248 -1.5277 24 6 2.9742 -5.7014 1.2049 25 1 2.4268 -5.3532 2.0808 26 6 2.7165 -7.1958 1.0017 27 6 2.5049 -4.9288 -0.0319 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5133 31 1 2.0220 2.1138 -0.0004 32 1 4.9000 -3.4506 -0.4444 33 1 4.3669 -2.1134 0.6069 34 1 4.1632 -3.6424 2.5189 35 1 5.7910 -3.8098 1.8173 36 1 4.7582 -5.9277 -0.6411 37 1 7.0905 -7.0155 -2.7634 38 1 3.2653 -7.5435 0.1265 39 1 3.0505 -7.7451 1.8819 40 1 1.6499 -7.3635 0.8520 41 1 1.4223 -5.0134 -0.1265 42 1 2.9845 -5.3371 -0.9215 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036028316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:59 Heat of formation + Delta-G solvation = 37.490106 kcal Electronic energy + Delta-G solvation = -24333.235749 eV Core-core repulsion = 20928.572321 eV Total energy + Delta-G solvation = -3404.663427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.66342 -41.06526 -39.00991 -35.89468 -34.55232 -33.96197 -32.98793 -32.16883 -30.90077 -28.15430 -27.69490 -26.69909 -25.38792 -24.13165 -23.07006 -21.70501 -20.63998 -19.69800 -19.30494 -18.82494 -17.87285 -16.98648 -16.88277 -16.55067 -15.96668 -15.80701 -15.47969 -14.97762 -14.85663 -14.38994 -14.30871 -14.17595 -14.07542 -13.75373 -13.58487 -13.18262 -12.98686 -12.87733 -12.80590 -12.61141 -12.39092 -12.13555 -12.04943 -11.93266 -11.58210 -11.38098 -11.15981 -10.99197 -10.71423 -10.38725 -9.79305 -9.53219 -8.91061 -7.87907 -5.14191 0.51425 1.21810 1.48721 1.49509 1.58743 1.84632 2.26312 2.33360 2.60146 3.37700 3.46265 3.77014 3.89448 3.95260 4.10017 4.13204 4.14020 4.40535 4.45170 4.51545 4.57172 4.61423 4.67140 4.77219 4.88418 4.95283 4.98559 5.06045 5.11694 5.13801 5.23454 5.25818 5.30785 5.34832 5.49635 5.60218 5.60814 5.68731 6.22636 6.33824 6.43452 6.88271 7.15724 7.40984 8.17295 8.41606 9.35879 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019961 B = 0.004587 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.404225 B = 6102.090258 C = 6953.522203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.174 4.174 3 C 0.013 3.987 4 N -0.368 5.368 5 H 0.463 0.537 6 N -0.276 5.276 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.591 5.591 11 C 0.106 3.894 12 C -0.140 4.140 13 C 0.172 3.828 14 H 0.048 0.952 15 N -0.724 5.724 16 C -0.226 4.226 17 H 0.075 0.925 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.299 1.299 23 H -0.298 1.298 24 C -0.098 4.098 25 H 0.085 0.915 26 C -0.130 4.130 27 C 0.123 3.877 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.234 0.766 32 H 0.042 0.958 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 17.643 7.158 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.185 4.185 3 C -0.132 4.132 4 N -0.083 5.083 5 H 0.312 0.688 6 N -0.114 5.114 7 C -0.198 4.198 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.322 5.322 11 C -0.017 4.017 12 C -0.180 4.180 13 C 0.063 3.937 14 H 0.066 0.934 15 N -0.365 5.365 16 C -0.358 4.358 17 H 0.093 0.907 18 C -0.266 4.266 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.226 1.226 23 H -0.226 1.226 24 C -0.117 4.117 25 H 0.103 0.897 26 C -0.188 4.188 27 C 0.001 3.999 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.251 0.749 32 H 0.060 0.940 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.876 17.064 7.196 20.537 hybrid contribution 0.860 -0.269 -0.740 1.166 sum -8.016 16.795 6.456 19.698 Atomic orbital electron populations 1.20143 0.87539 1.03115 1.02488 1.20714 0.98420 0.90489 1.08848 1.23346 0.82874 1.01694 1.05331 1.43562 1.09957 1.03733 1.51048 0.68835 1.73352 1.22301 0.95310 1.20404 1.21802 0.90785 0.94560 1.12630 1.17415 0.84730 0.83804 0.76138 1.90682 1.17787 1.83188 1.53014 1.48012 1.09651 1.06145 1.68355 1.22352 0.79204 1.02748 0.97418 1.22465 1.00887 0.97767 0.96921 1.20448 0.90436 0.92797 0.89994 0.93366 1.42579 1.09350 1.78434 1.06093 1.19628 0.88551 1.33706 0.93923 0.90688 1.25398 1.01757 1.03997 0.95429 1.69821 1.37192 1.56204 0.98968 0.85185 0.81067 0.76725 0.77471 1.19079 1.22636 1.22597 1.21619 0.96196 0.96242 0.97681 0.89716 1.21593 1.01186 0.94088 1.01915 1.21568 1.00800 0.79535 0.98026 0.91251 0.89032 0.92770 0.74921 0.93984 0.85242 0.91400 0.91806 0.79380 0.94409 0.94134 0.92064 0.91471 0.89371 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.99 71.24 0.71 -0.81 16 2 C -0.17 -4.00 6.25 -19.72 -0.12 -4.12 16 3 C 0.01 0.18 11.97 83.54 1.00 1.18 16 4 N -0.37 -5.93 6.83 -57.51 -0.39 -6.32 16 5 H 0.46 3.58 8.96 -220.00 -1.97 1.61 16 6 N -0.28 -7.37 8.69 -48.18 -0.42 -7.79 16 7 C -0.04 -1.20 6.84 42.46 0.29 -0.91 16 8 C 0.59 21.59 7.69 86.75 0.67 22.26 16 9 O -0.57 -22.55 14.51 -3.95 -0.06 -22.60 16 10 N -0.59 -21.78 2.97 -821.60 -2.44 -24.22 16 11 C 0.11 3.88 5.89 86.51 0.51 4.39 16 12 C -0.14 -4.98 5.79 30.82 0.18 -4.80 16 13 C 0.17 6.75 2.53 45.02 0.11 6.86 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 N -0.72 -35.29 3.63 -322.82 -1.17 -36.47 16 16 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 20 Si 0.96 46.12 29.55 68.60 2.03 48.15 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 24 C -0.10 -3.36 2.67 -10.72 -0.03 -3.39 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 C -0.13 -4.31 9.06 71.98 0.65 -3.66 16 27 C 0.12 4.58 5.43 86.36 0.47 5.05 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.44 6.62 -2.39 -0.02 1.42 16 31 H 0.23 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.04 1.85 7.74 -2.39 -0.02 1.84 16 33 H 0.13 4.33 4.14 -30.44 -0.13 4.20 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 36 H 0.37 19.90 5.92 -92.70 -0.55 19.35 16 37 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 3.19 7.00 -2.39 -0.02 3.17 16 42 H 0.05 2.13 6.64 -2.39 -0.02 2.11 16 Total: -1.00 -72.90 333.90 1.99 -70.91 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -1.58 Total: 30.43 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.74 Total: 6.95 kcal Atomic # 7 Polarization: -129.69 SS G_CDS: -4.14 Total: -133.83 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.90 1.99 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.399 kcal (2) G-P(sol) polarization free energy of solvation -72.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds