Wall clock time and date at job start Tue Mar 31 2020 04:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35372 * 127.24525 * 2 1 4 4 N 1.35031 * 107.22640 * 179.97438 * 3 2 1 5 5 H 0.96999 * 124.88163 * 180.02562 * 4 3 2 6 6 N 1.28470 * 110.23360 * 359.74623 * 4 3 2 7 7 C 1.31816 * 110.07035 * 0.41931 * 6 4 3 8 8 C 1.47704 * 126.51442 * 179.85850 * 7 6 4 9 9 O 1.21580 * 119.99544 * 173.30402 * 8 7 6 10 10 N 1.34779 * 120.00402 * 353.30092 * 8 7 6 11 11 C 1.46920 * 120.63059 * 353.03386 * 10 8 7 12 12 C 1.53192 * 108.77645 * 233.58588 * 11 10 8 13 13 C 1.53033 * 109.33944 * 305.35062 * 12 11 10 14 14 H 1.08996 * 109.46139 * 181.40526 * 13 12 11 15 15 N 1.46506 * 109.45699 * 301.36074 * 13 12 11 16 16 C 1.36941 * 119.99636 * 275.00128 * 15 13 12 17 17 H 1.07999 * 120.00076 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99685 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00038 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47238 * 59.99362 * 20 18 16 22 22 H 1.48501 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47089 * 299.99521 * 20 18 16 24 24 C 1.53104 * 109.50491 * 61.34322 * 13 12 11 25 25 H 1.08997 * 109.51305 * 58.63623 * 24 13 12 26 26 C 1.53009 * 109.48687 * 178.70219 * 24 13 12 27 27 C 1.46921 * 120.62972 * 173.01018 * 10 8 7 28 28 H 1.09000 * 109.47031 * 270.02438 * 1 2 3 29 29 H 1.08993 * 109.47281 * 30.02679 * 1 2 3 30 30 H 1.09000 * 109.47111 * 150.02831 * 1 2 3 31 31 H 1.07999 * 126.38718 * 359.95704 * 3 2 1 32 32 H 1.08997 * 109.59052 * 113.79473 * 11 10 8 33 33 H 1.09006 * 109.58382 * 353.37365 * 11 10 8 34 34 H 1.09005 * 109.49727 * 65.31305 * 12 11 10 35 35 H 1.08994 * 109.49966 * 185.37686 * 12 11 10 36 36 H 0.96995 * 119.99970 * 95.00257 * 15 13 12 37 37 H 0.97001 * 119.99537 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.46508 * 179.85845 * 26 24 13 39 39 H 1.08995 * 109.47052 * 299.85681 * 26 24 13 40 40 H 1.08999 * 109.47228 * 59.85994 * 26 24 13 41 41 H 1.09006 * 109.58728 * 246.19899 * 27 10 8 42 42 H 1.08999 * 109.58874 * 6.48372 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6154 0.0006 5 1 4.3887 1.1731 0.0011 6 7 3.5999 -0.6693 0.0063 7 6 2.3635 -1.1263 0.0007 8 6 1.9507 -2.5445 0.0014 9 8 0.7761 -2.8356 0.1186 10 7 2.8761 -3.5159 -0.1278 11 6 4.2761 -3.1816 -0.4222 12 6 4.7217 -3.9692 -1.6583 13 6 4.4674 -5.4605 -1.4278 14 1 4.8067 -6.0252 -2.2961 15 7 5.2025 -5.9032 -0.2403 16 6 6.5153 -6.2777 -0.3480 17 1 7.0086 -6.2471 -1.3083 18 6 7.2117 -6.6976 0.7770 19 7 6.6104 -6.7353 1.9472 20 14 9.0023 -7.2091 0.6300 21 1 9.8027 -6.0680 0.1177 22 1 9.5133 -7.6118 1.9650 23 1 9.1146 -8.3538 -0.3093 24 6 2.9694 -5.6971 -1.2175 25 1 2.4193 -5.3457 -2.0904 26 6 2.7117 -7.1923 -1.0193 27 6 2.5040 -4.9291 0.0236 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 2.0220 2.1139 -0.0007 32 1 4.9027 -3.4508 0.4281 33 1 4.3630 -2.1129 -0.6188 34 1 4.1554 -3.6336 -2.5271 35 1 5.7851 -3.8039 -1.8312 36 1 4.7594 -5.9310 0.6220 37 1 7.0972 -7.0283 2.7333 38 1 1.6455 -7.3600 -0.8671 39 1 3.0430 -7.7383 -1.9025 40 1 3.2629 -7.5435 -0.1470 41 1 2.9861 -5.3410 0.9102 42 1 1.4219 -5.0134 0.1236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036028322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:07 Heat of formation + Delta-G solvation = 37.412490 kcal Electronic energy + Delta-G solvation = -24332.817248 eV Core-core repulsion = 20928.150455 eV Total energy + Delta-G solvation = -3404.666793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.66300 -41.06942 -39.01033 -35.89181 -34.54917 -33.96493 -32.99920 -32.17152 -30.91132 -28.15454 -27.69638 -26.70120 -25.37913 -24.13312 -23.06732 -21.70382 -20.63761 -19.69397 -19.30037 -18.82559 -17.87393 -17.00686 -16.86666 -16.55099 -15.95514 -15.81162 -15.48995 -14.98227 -14.85546 -14.40631 -14.28485 -14.17686 -14.07778 -13.74588 -13.58972 -13.18742 -12.99656 -12.83602 -12.76548 -12.60594 -12.38944 -12.16066 -12.11549 -11.93002 -11.57682 -11.39231 -11.16046 -10.99009 -10.71968 -10.38072 -9.79692 -9.52947 -8.90830 -7.87276 -5.13709 0.51467 1.21834 1.49373 1.51257 1.57114 1.84677 2.25809 2.33395 2.60648 3.37665 3.46430 3.77031 3.89472 3.95373 4.09916 4.13185 4.13741 4.41195 4.44881 4.51346 4.57200 4.61420 4.67083 4.76955 4.88497 4.94981 4.98461 5.06043 5.11536 5.13880 5.23162 5.25808 5.30677 5.34424 5.49517 5.59233 5.60358 5.68686 6.22564 6.34026 6.43344 6.87914 7.15529 7.41295 8.17681 8.42138 9.36032 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.004586 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.195059 B = 6104.496728 C = 6955.437606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.175 4.175 3 C 0.013 3.987 4 N -0.368 5.368 5 H 0.463 0.537 6 N -0.276 5.276 7 C -0.039 4.039 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.591 5.591 11 C 0.107 3.893 12 C -0.140 4.140 13 C 0.172 3.828 14 H 0.048 0.952 15 N -0.723 5.723 16 C -0.229 4.229 17 H 0.075 0.925 18 C -0.073 4.073 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.280 1.280 22 H -0.301 1.301 23 H -0.281 1.281 24 C -0.098 4.098 25 H 0.085 0.915 26 C -0.130 4.130 27 C 0.123 3.877 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.235 0.765 32 H 0.042 0.958 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 17.653 -7.071 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.185 4.185 3 C -0.132 4.132 4 N -0.083 5.083 5 H 0.312 0.688 6 N -0.114 5.114 7 C -0.198 4.198 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.322 5.322 11 C -0.016 4.016 12 C -0.181 4.181 13 C 0.063 3.937 14 H 0.066 0.934 15 N -0.364 5.364 16 C -0.361 4.361 17 H 0.093 0.907 18 C -0.265 4.265 19 N -0.621 5.621 20 Si 0.796 3.204 21 H -0.206 1.206 22 H -0.228 1.228 23 H -0.207 1.207 24 C -0.117 4.117 25 H 0.103 0.897 26 C -0.188 4.188 27 C 0.001 3.999 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.251 0.749 32 H 0.060 0.940 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.850 17.071 -7.079 20.491 hybrid contribution 0.861 -0.271 0.726 1.158 sum -7.989 16.801 -6.353 19.658 Atomic orbital electron populations 1.20108 0.87519 1.03024 1.02329 1.20716 0.98415 0.90495 1.08872 1.23346 0.82869 1.01693 1.05319 1.43559 1.09960 1.03730 1.51041 0.68833 1.73380 1.22311 0.95308 1.20381 1.21804 0.90790 0.94555 1.12633 1.17412 0.84720 0.83806 0.76166 1.90690 1.17767 1.83211 1.52993 1.48000 1.09759 1.06126 1.68273 1.22232 0.79297 1.02675 0.97404 1.22394 1.00902 0.97828 0.96958 1.20457 0.90395 0.92740 0.90068 0.93356 1.42563 1.09383 1.78329 1.06171 1.19556 0.88645 1.33958 0.93963 0.90739 1.25404 1.01790 1.03900 0.95414 1.69813 1.37346 1.55960 0.99010 0.85321 0.81073 0.78171 0.75834 1.20623 1.22769 1.20710 1.21628 0.96207 0.96262 0.97637 0.89719 1.21594 1.01181 0.94084 1.01919 1.21564 1.00805 0.79528 0.98022 0.91640 0.88838 0.92863 0.74901 0.94000 0.85358 0.91426 0.91792 0.79380 0.94401 0.91467 0.92074 0.94135 0.93140 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.88 71.24 0.70 -0.76 16 2 C -0.17 -4.01 6.25 -19.72 -0.12 -4.13 16 3 C 0.01 0.18 11.97 83.54 1.00 1.18 16 4 N -0.37 -5.93 6.83 -57.51 -0.39 -6.32 16 5 H 0.46 3.59 8.96 -219.99 -1.97 1.62 16 6 N -0.28 -7.39 8.71 -48.18 -0.42 -7.81 16 7 C -0.04 -1.20 6.83 42.45 0.29 -0.91 16 8 C 0.59 21.62 7.69 86.74 0.67 22.29 16 9 O -0.57 -22.58 14.63 -3.97 -0.06 -22.64 16 10 N -0.59 -21.82 2.97 -822.48 -2.44 -24.26 16 11 C 0.11 3.93 5.85 86.36 0.51 4.44 16 12 C -0.14 -5.00 5.78 30.67 0.18 -4.83 16 13 C 0.17 6.77 2.54 45.04 0.11 6.88 16 14 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 15 N -0.72 -35.36 3.64 -322.71 -1.17 -36.53 16 16 C -0.23 -12.40 9.93 84.03 0.83 -11.56 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 19 N -0.97 -59.29 13.06 21.65 0.28 -59.00 16 20 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 C -0.10 -3.37 2.67 -10.69 -0.03 -3.39 16 25 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 26 C -0.13 -4.32 9.06 71.99 0.65 -3.66 16 27 C 0.12 4.59 5.43 86.36 0.47 5.06 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 31 H 0.23 0.66 8.06 -2.91 -0.02 0.63 16 32 H 0.04 1.85 7.74 -2.39 -0.02 1.83 16 33 H 0.13 4.30 4.17 -25.75 -0.11 4.19 16 34 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.37 19.93 5.93 -92.71 -0.55 19.38 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.59 7.53 -2.39 -0.02 1.57 16 41 H 0.05 2.13 6.64 -2.38 -0.02 2.11 16 42 H 0.09 3.19 7.00 -2.39 -0.02 3.18 16 Total: -1.00 -72.86 334.17 1.98 -70.88 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -1.57 Total: 30.67 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.73 Total: 6.91 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -4.15 Total: -133.93 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.86 1.98 -70.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036028322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.288 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds