Wall clock time and date at job start Tue Mar 31 2020 03:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00184 * 2 1 4 4 O 1.21280 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99577 * 359.97438 * 3 2 1 6 6 H 1.08994 * 110.66813 * 56.79079 * 5 3 2 7 7 C 1.55004 * 110.75077 * 293.36470 * 5 3 2 8 8 C 1.55816 * 102.79057 * 241.68111 * 7 5 3 9 9 H 1.09003 * 115.38554 * 158.83897 * 8 7 5 10 10 O 1.46535 * 101.24476 * 32.41741 * 8 7 5 11 11 C 1.46534 * 99.68009 * 305.84053 * 10 8 7 12 12 H 1.09005 * 116.25652 * 180.02562 * 11 10 8 13 13 C 1.55816 * 101.24624 * 305.83942 * 11 10 8 14 14 H 1.08997 * 118.19990 * 173.58937 * 13 11 10 15 15 C 1.53007 * 117.23858 * 330.28432 * 13 11 10 16 16 C 1.52997 * 60.86752 * 89.21411 * 15 13 11 17 17 H 1.08999 * 120.22836 * 113.05941 * 16 15 13 18 18 C 1.46502 * 119.99792 * 179.97438 * 2 1 3 19 19 C 1.53499 * 114.20657 * 300.00459 * 18 2 1 20 20 N 1.47061 * 87.98586 * 87.52056 * 19 18 2 21 21 C 1.36942 * 136.05807 * 207.08109 * 20 19 18 22 22 H 1.07994 * 119.99475 * 6.59606 * 21 20 19 23 23 C 1.38809 * 119.99937 * 186.58710 * 21 20 19 24 24 N 1.31617 * 120.00069 * 6.44924 * 23 21 20 25 25 Si 1.86799 * 119.99919 * 186.44336 * 23 21 20 26 26 H 1.48498 * 109.47071 * 265.02255 * 25 23 21 27 27 H 1.48501 * 109.47365 * 145.02124 * 25 23 21 28 28 H 1.48502 * 109.47155 * 25.02245 * 25 23 21 29 29 C 1.47066 * 87.88706 * 27.34157 * 20 19 18 30 30 H 1.08995 * 109.47380 * 270.00574 * 1 2 3 31 31 H 1.09003 * 109.46743 * 30.00660 * 1 2 3 32 32 H 1.09005 * 109.46897 * 149.99893 * 1 2 3 33 33 H 1.09002 * 110.74824 * 0.02562 * 7 5 3 34 34 H 1.09007 * 110.74684 * 123.35285 * 7 5 3 35 35 H 1.08998 * 117.40703 * 196.95628 * 15 13 11 36 36 H 1.08997 * 117.40930 * 341.47278 * 15 13 11 37 37 H 1.09007 * 113.41340 * 166.80489 * 18 2 1 38 38 H 1.08994 * 113.46612 * 332.73683 * 19 18 2 39 39 H 1.09002 * 113.51533 * 202.31023 * 19 18 2 40 40 H 0.97004 * 120.00128 * 179.97438 * 24 23 21 41 41 H 1.09005 * 113.46934 * 87.43643 * 29 20 19 42 42 H 1.09002 * 113.46882 * 217.87781 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.7090 2.5263 0.8524 7 6 0.6135 2.6601 -1.3316 8 6 1.2559 3.9502 -1.9238 9 1 1.1360 4.0806 -2.9993 10 8 2.6321 3.8349 -1.4340 11 6 2.3713 3.6789 -0.0005 12 1 3.2466 3.5677 0.6396 13 6 1.4896 4.9312 0.2859 14 1 1.0442 5.0321 1.2756 15 6 1.7288 6.1692 -0.5808 16 6 0.7177 5.1191 -1.0451 17 1 -0.3441 5.3615 -1.0891 18 6 2.1975 -1.2688 0.0006 19 6 1.9058 -2.1633 1.2134 20 7 0.7741 -2.7256 0.4611 21 6 -0.4282 -3.3020 0.7731 22 1 -0.7652 -3.3266 1.7988 23 6 -1.2138 -3.8546 -0.2291 24 7 -0.7497 -3.9391 -1.4578 25 14 -2.9296 -4.4784 0.1663 26 1 -2.8753 -5.9370 0.4394 27 1 -3.8272 -4.2242 -0.9892 28 1 -3.4505 -3.7698 1.3629 29 6 1.5047 -2.4023 -0.7736 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7735 1.8095 -1.9942 34 1 -0.4498 2.8094 -1.1435 35 1 1.3354 7.1190 -0.2185 36 1 2.6739 6.2289 -1.1205 37 1 3.2575 -1.1571 -0.2278 38 1 1.6037 -1.6068 2.1005 39 1 2.6936 -2.8882 1.4186 40 1 -1.2986 -4.3255 -2.1581 41 1 2.1873 -3.1899 -1.0930 42 1 0.8609 -2.0494 -1.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043384876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:39 Heat of formation + Delta-G solvation = 49.235471 kcal Electronic energy + Delta-G solvation = -24507.479618 eV Core-core repulsion = 21071.032757 eV Total energy + Delta-G solvation = -3436.446861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71323 -39.54154 -37.61401 -34.48003 -34.12912 -32.39912 -31.64347 -29.51371 -27.92993 -26.18850 -24.77307 -24.59247 -23.34118 -22.32852 -20.66111 -20.30336 -19.61715 -18.18441 -17.28496 -16.89260 -16.63066 -15.93731 -15.61294 -14.87924 -14.81699 -14.35567 -14.04643 -13.72657 -13.51158 -12.86219 -12.66463 -12.62193 -12.48575 -12.44879 -11.88171 -11.76389 -11.50111 -11.35364 -11.33169 -11.23821 -11.00031 -10.91464 -10.66535 -10.38305 -10.14444 -10.04561 -9.89608 -9.83351 -9.45930 -9.34597 -8.84231 -7.96036 -6.95230 -5.86157 -3.17345 2.95595 3.22328 3.32662 3.38718 3.40389 3.44758 3.71829 4.36838 4.38935 4.39850 4.44634 4.67599 4.69609 4.87122 5.02590 5.06358 5.20651 5.26696 5.36896 5.40815 5.47821 5.52327 5.57310 5.67530 5.71836 5.80638 5.87425 5.97263 6.04829 6.12677 6.18239 6.21319 6.42950 6.47136 6.55246 6.67758 6.91336 7.10954 7.27553 7.45123 7.87055 7.98139 8.58862 8.95655 9.61719 10.57081 11.31873 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.004152 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.790956 B = 6742.914090 C = 7289.115478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.574 5.574 3 C 0.521 3.479 4 O -0.547 6.547 5 C -0.131 4.131 6 H 0.106 0.894 7 C -0.132 4.132 8 C 0.089 3.911 9 H 0.133 0.867 10 O -0.361 6.361 11 C 0.119 3.881 12 H 0.138 0.862 13 C -0.199 4.199 14 H 0.123 0.877 15 C -0.135 4.135 16 C -0.195 4.195 17 H 0.122 0.878 18 C 0.082 3.918 19 C 0.104 3.896 20 N -0.605 5.605 21 C -0.217 4.217 22 H 0.080 0.920 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.152 3.848 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.254 0.746 41 H 0.041 0.959 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 17.772 1.148 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.305 5.305 3 C 0.309 3.691 4 O -0.425 6.425 5 C -0.152 4.152 6 H 0.124 0.876 7 C -0.170 4.170 8 C 0.031 3.969 9 H 0.150 0.850 10 O -0.279 6.279 11 C 0.061 3.939 12 H 0.155 0.845 13 C -0.218 4.218 14 H 0.141 0.859 15 C -0.172 4.172 16 C -0.213 4.213 17 H 0.140 0.860 18 C -0.023 4.023 19 C -0.023 4.023 20 N -0.332 5.332 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.026 3.974 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.805 17.565 0.959 17.684 hybrid contribution -1.387 -0.756 0.448 1.642 sum 0.418 16.809 1.407 16.873 Atomic orbital electron populations 1.22009 0.78631 1.03918 1.02085 1.47302 1.07410 1.04644 1.71109 1.20195 0.87729 0.84815 0.76407 1.90652 1.13830 1.87369 1.50695 1.22874 0.98431 0.93591 1.00328 0.87558 1.23199 0.99868 0.98503 0.95397 1.24228 0.81726 0.92188 0.98788 0.84959 1.90146 1.24524 1.93362 1.19882 1.23963 0.96263 0.90017 0.83696 0.84494 1.24315 1.04111 0.97382 0.95945 0.85920 1.22794 1.00623 0.92435 1.01363 1.24344 0.98693 1.00453 0.97813 0.86003 1.22711 0.95756 0.83530 1.00310 1.22841 0.90951 0.93606 0.94934 1.45853 1.14004 1.71223 1.02103 1.18921 0.91089 1.30812 0.93654 0.90206 1.24796 0.98987 1.00582 0.95872 1.69849 1.36417 1.49666 1.00532 0.86159 0.84007 0.78763 0.77188 1.21653 1.21597 1.20532 1.22400 0.92384 0.90729 0.91887 0.93202 0.92540 0.87525 0.89616 0.89418 0.88142 0.88235 0.88318 0.94113 0.94101 0.93564 0.94125 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 9.18 59.85 0.55 1.85 16 2 N -0.57 -10.38 3.12 -173.55 -0.54 -10.92 16 3 C 0.52 9.00 6.88 -10.99 -0.08 8.93 16 4 O -0.55 -11.12 15.44 5.56 0.09 -11.04 16 5 C -0.13 -1.71 2.00 -89.21 -0.18 -1.89 16 6 H 0.11 1.22 7.95 -51.93 -0.41 0.80 16 7 C -0.13 -1.53 4.21 -24.17 -0.10 -1.63 16 8 C 0.09 0.98 5.66 -23.72 -0.13 0.84 16 9 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 10 O -0.36 -5.23 10.78 -35.23 -0.38 -5.61 16 11 C 0.12 1.52 4.54 -23.72 -0.11 1.41 16 12 H 0.14 1.83 7.80 -51.93 -0.41 1.43 16 13 C -0.20 -1.96 6.63 -88.05 -0.58 -2.54 16 14 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 15 C -0.14 -1.22 9.80 -26.73 -0.26 -1.48 16 16 C -0.19 -1.79 6.63 -88.06 -0.58 -2.38 16 17 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.08 1.63 4.68 -67.67 -0.32 1.31 16 19 C 0.10 2.16 8.31 -8.51 -0.07 2.09 16 20 N -0.61 -14.69 2.47 -184.62 -0.46 -15.15 16 21 C -0.22 -5.74 10.35 -15.06 -0.16 -5.89 16 22 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 23 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 24 N -0.92 -25.95 11.81 55.49 0.66 -25.30 16 25 Si 0.91 21.10 29.56 -169.99 -5.02 16.08 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.15 3.48 6.25 -8.37 -0.05 3.43 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.78 4.62 -51.93 -0.24 0.54 16 32 H 0.11 2.25 5.38 -51.93 -0.28 1.97 16 33 H 0.09 1.14 7.48 -51.93 -0.39 0.75 16 34 H 0.09 0.83 7.66 -51.93 -0.40 0.43 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.01 7.65 -51.93 -0.40 0.61 16 37 H 0.10 1.94 7.30 -51.93 -0.38 1.56 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.62 6.71 -51.93 -0.35 1.27 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -31.13 328.97 -9.05 -40.18 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.18 Total: 2.97 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -2.17 Total: 3.82 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.34 Total: -51.36 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.29 Total: -16.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.13 -9.05 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043384876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.419 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds