Wall clock time and date at job start Tue Mar 31 2020 03:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00184 * 2 1 4 4 O 1.21280 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99577 * 359.97438 * 3 2 1 6 6 H 1.08994 * 110.66813 * 56.79079 * 5 3 2 7 7 C 1.55004 * 110.75077 * 293.36470 * 5 3 2 8 8 C 1.55816 * 102.79057 * 241.68111 * 7 5 3 9 9 H 1.09003 * 115.38554 * 158.83897 * 8 7 5 10 10 O 1.46535 * 101.24476 * 32.41741 * 8 7 5 11 11 C 1.46534 * 99.68009 * 305.84053 * 10 8 7 12 12 H 1.09005 * 116.25652 * 180.02562 * 11 10 8 13 13 C 1.55816 * 101.24624 * 305.83942 * 11 10 8 14 14 H 1.08997 * 118.19990 * 173.58937 * 13 11 10 15 15 C 1.53007 * 117.23858 * 330.28432 * 13 11 10 16 16 C 1.52997 * 60.86752 * 89.21411 * 15 13 11 17 17 H 1.08999 * 120.22836 * 113.05941 * 16 15 13 18 18 C 1.46502 * 119.99792 * 179.97438 * 2 1 3 19 19 C 1.53499 * 114.20657 * 300.00459 * 18 2 1 20 20 N 1.47061 * 87.98586 * 87.52056 * 19 18 2 21 21 C 1.36942 * 136.05807 * 207.08109 * 20 19 18 22 22 H 1.07994 * 119.99475 * 6.59606 * 21 20 19 23 23 C 1.38809 * 119.99937 * 186.58710 * 21 20 19 24 24 N 1.31617 * 120.00069 * 6.44924 * 23 21 20 25 25 Si 1.86799 * 119.99919 * 186.44336 * 23 21 20 26 26 H 1.48498 * 109.47071 * 265.02255 * 25 23 21 27 27 H 1.48501 * 109.47365 * 145.02124 * 25 23 21 28 28 H 1.48502 * 109.47155 * 25.02245 * 25 23 21 29 29 C 1.47066 * 87.88706 * 27.34157 * 20 19 18 30 30 H 1.08995 * 109.47380 * 270.00574 * 1 2 3 31 31 H 1.09003 * 109.46743 * 30.00660 * 1 2 3 32 32 H 1.09005 * 109.46897 * 149.99893 * 1 2 3 33 33 H 1.09002 * 110.74824 * 0.02562 * 7 5 3 34 34 H 1.09007 * 110.74684 * 123.35285 * 7 5 3 35 35 H 1.08998 * 117.40703 * 196.95628 * 15 13 11 36 36 H 1.08997 * 117.40930 * 341.47278 * 15 13 11 37 37 H 1.09007 * 113.41340 * 166.80489 * 18 2 1 38 38 H 1.08994 * 113.46612 * 332.73683 * 19 18 2 39 39 H 1.09002 * 113.51533 * 202.31023 * 19 18 2 40 40 H 0.97004 * 120.00128 * 179.97438 * 24 23 21 41 41 H 1.09005 * 113.46934 * 87.43643 * 29 20 19 42 42 H 1.09002 * 113.46882 * 217.87781 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.7090 2.5263 0.8524 7 6 0.6135 2.6601 -1.3316 8 6 1.2559 3.9502 -1.9238 9 1 1.1360 4.0806 -2.9993 10 8 2.6321 3.8349 -1.4340 11 6 2.3713 3.6789 -0.0005 12 1 3.2466 3.5677 0.6396 13 6 1.4896 4.9312 0.2859 14 1 1.0442 5.0321 1.2756 15 6 1.7288 6.1692 -0.5808 16 6 0.7177 5.1191 -1.0451 17 1 -0.3441 5.3615 -1.0891 18 6 2.1975 -1.2688 0.0006 19 6 1.9058 -2.1633 1.2134 20 7 0.7741 -2.7256 0.4611 21 6 -0.4282 -3.3020 0.7731 22 1 -0.7652 -3.3266 1.7988 23 6 -1.2138 -3.8546 -0.2291 24 7 -0.7497 -3.9391 -1.4578 25 14 -2.9296 -4.4784 0.1663 26 1 -2.8753 -5.9370 0.4394 27 1 -3.8272 -4.2242 -0.9892 28 1 -3.4505 -3.7698 1.3629 29 6 1.5047 -2.4023 -0.7736 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5139 33 1 0.7735 1.8095 -1.9942 34 1 -0.4498 2.8094 -1.1435 35 1 1.3354 7.1190 -0.2185 36 1 2.6739 6.2289 -1.1205 37 1 3.2575 -1.1571 -0.2278 38 1 1.6037 -1.6068 2.1005 39 1 2.6936 -2.8882 1.4186 40 1 -1.2986 -4.3255 -2.1581 41 1 2.1873 -3.1899 -1.0930 42 1 0.8609 -2.0494 -1.5793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043384876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:38 Heat of formation + Delta-G solvation = 30.261438 kcal Electronic energy + Delta-G solvation = -24508.302394 eV Core-core repulsion = 21071.032757 eV Total energy + Delta-G solvation = -3437.269637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66765 -41.04081 -39.20799 -35.76003 -35.21717 -34.19957 -32.91721 -30.42719 -29.77853 -27.70283 -26.40146 -25.98454 -24.67912 -23.55860 -21.67099 -21.23552 -20.76653 -19.74169 -18.73608 -18.21466 -17.88368 -17.17597 -16.93652 -16.72147 -16.22880 -15.64105 -15.37043 -15.28088 -14.65593 -14.52940 -14.15164 -13.95742 -13.59085 -13.45912 -13.28116 -13.14170 -12.85659 -12.78572 -12.66689 -12.46576 -12.39177 -12.20276 -12.07427 -11.97289 -11.73777 -11.33633 -11.21517 -10.99799 -10.92048 -10.61246 -10.56473 -9.50755 -8.92986 -7.90556 -5.23073 1.48800 1.49971 1.58703 1.59076 1.95928 2.48199 2.65826 2.76530 3.30549 3.37333 3.45018 3.51871 3.60223 3.74426 3.82192 3.86661 3.97977 4.15299 4.23763 4.31776 4.38824 4.48130 4.54202 4.62673 4.66364 4.73201 4.80337 4.84079 4.87886 4.90008 4.93097 4.99893 5.05295 5.14828 5.16153 5.29682 5.35547 5.45373 5.56218 5.69949 5.87478 6.54357 6.90290 7.17394 7.59825 8.60032 9.27720 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.004152 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.790956 B = 6742.914090 C = 7289.115478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.579 5.579 3 C 0.518 3.482 4 O -0.582 6.582 5 C -0.124 4.124 6 H 0.132 0.868 7 C -0.129 4.129 8 C 0.081 3.919 9 H 0.146 0.854 10 O -0.396 6.396 11 C 0.109 3.891 12 H 0.121 0.879 13 C -0.198 4.198 14 H 0.144 0.856 15 C -0.133 4.133 16 C -0.182 4.182 17 H 0.149 0.851 18 C 0.101 3.899 19 C 0.108 3.892 20 N -0.622 5.622 21 C -0.222 4.222 22 H 0.084 0.916 23 C -0.056 4.056 24 N -0.951 5.951 25 Si 0.974 3.026 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.264 1.264 29 C 0.156 3.844 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 19.931 2.268 20.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.309 5.309 3 C 0.308 3.692 4 O -0.462 6.462 5 C -0.145 4.145 6 H 0.149 0.851 7 C -0.167 4.167 8 C 0.024 3.976 9 H 0.163 0.837 10 O -0.316 6.316 11 C 0.051 3.949 12 H 0.138 0.862 13 C -0.216 4.216 14 H 0.162 0.838 15 C -0.170 4.170 16 C -0.200 4.200 17 H 0.167 0.833 18 C -0.005 4.005 19 C -0.018 4.018 20 N -0.348 5.348 21 C -0.350 4.350 22 H 0.102 0.898 23 C -0.250 4.250 24 N -0.599 5.599 25 Si 0.802 3.198 26 H -0.222 1.222 27 H -0.220 1.220 28 H -0.189 1.189 29 C 0.029 3.971 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.027 19.747 2.105 19.859 hybrid contribution -0.718 -1.419 0.080 1.593 sum -0.691 18.327 2.185 18.470 Atomic orbital electron populations 1.21904 0.77814 1.03640 1.02137 1.47393 1.07847 1.04300 1.71312 1.20991 0.87560 0.85736 0.74904 1.90634 1.15611 1.87915 1.52082 1.22925 0.98592 0.90872 1.02157 0.85053 1.23221 1.01412 0.98118 0.93969 1.24480 0.80233 0.92872 0.99989 0.83676 1.90118 1.26882 1.93629 1.20950 1.23991 0.96259 0.91597 0.83058 0.86171 1.24270 1.03741 0.96378 0.97253 0.83821 1.22888 1.00055 0.93266 1.00787 1.24391 0.99880 0.99524 0.96240 0.83335 1.22402 0.95685 0.83800 0.98646 1.22905 0.89993 0.93671 0.95243 1.46017 1.14493 1.71061 1.03264 1.19227 0.91986 1.29984 0.93814 0.89813 1.25524 1.02427 1.01306 0.95711 1.70021 1.37569 1.50936 1.01365 0.85141 0.79746 0.77706 0.77196 1.22158 1.21999 1.18890 1.22283 0.91856 0.91610 0.91344 0.92837 0.89061 0.91512 0.91769 0.86365 0.85610 0.90004 0.88167 0.93243 0.93130 0.94240 0.95493 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.90 9.18 127.77 1.17 4.07 16 2 N -0.58 -20.67 3.12 -821.38 -2.56 -23.22 16 3 C 0.52 17.61 6.88 87.66 0.60 18.22 16 4 O -0.58 -23.89 15.44 -3.03 -0.05 -23.94 16 5 C -0.12 -3.01 2.00 -9.88 -0.02 -3.03 16 6 H 0.13 2.54 7.95 -2.39 -0.02 2.52 16 7 C -0.13 -2.69 4.21 32.25 0.14 -2.55 16 8 C 0.08 1.62 5.66 32.54 0.18 1.80 16 9 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 10 O -0.40 -11.27 10.78 -148.98 -1.61 -12.88 16 11 C 0.11 2.66 4.54 32.54 0.15 2.81 16 12 H 0.12 3.25 7.80 -2.38 -0.02 3.23 16 13 C -0.20 -3.28 6.63 -9.13 -0.06 -3.34 16 14 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 15 C -0.13 -2.00 9.80 30.60 0.30 -1.70 16 16 C -0.18 -2.68 6.63 -9.13 -0.06 -2.74 16 17 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 18 C 0.10 4.03 4.68 45.55 0.21 4.24 16 19 C 0.11 4.47 8.31 83.18 0.69 5.16 16 20 N -0.62 -30.44 2.47 -738.03 -1.82 -32.26 16 21 C -0.22 -11.72 10.35 84.03 0.87 -10.85 16 22 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 23 C -0.06 -3.01 5.50 84.86 0.47 -2.55 16 24 N -0.95 -54.90 11.81 21.65 0.26 -54.64 16 25 Si 0.97 43.38 29.56 68.60 2.03 45.40 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 29 C 0.16 7.34 6.25 83.27 0.52 7.86 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.33 4.62 -2.39 -0.01 2.32 16 32 H 0.07 2.83 5.38 -2.38 -0.01 2.82 16 33 H 0.06 1.63 7.48 -2.39 -0.02 1.61 16 34 H 0.12 1.73 7.66 -2.38 -0.02 1.72 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.54 7.65 -2.39 -0.02 1.52 16 37 H 0.10 4.00 7.30 -2.38 -0.02 3.99 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.04 2.18 6.71 -2.39 -0.02 2.17 16 Total: -1.00 -68.66 328.97 2.43 -66.23 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.02 Total: 17.91 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.16 Total: 17.40 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.13 Total: -110.13 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.65 Total: -36.82 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.66 2.43 -66.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043384876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.491 kcal (2) G-P(sol) polarization free energy of solvation -68.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds