Wall clock time and date at job start Tue Mar 31 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35362 * 126.38951 * 2 1 4 4 C 1.41499 * 105.50311 * 180.15616 * 3 2 1 5 5 C 1.47712 * 126.51918 * 179.90557 * 4 3 2 6 6 O 1.21574 * 120.00077 * 6.85462 * 5 4 3 7 7 N 1.34780 * 120.00306 * 186.86323 * 5 4 3 8 8 C 1.46920 * 120.62642 * 6.32761 * 7 5 4 9 9 C 1.53194 * 108.76532 * 126.41140 * 8 7 5 10 10 C 1.53041 * 109.31119 * 54.64979 * 9 8 7 11 11 H 1.09004 * 109.45999 * 58.63589 * 10 9 8 12 12 N 1.46505 * 109.45865 * 178.60269 * 10 9 8 13 13 C 1.36938 * 120.00103 * 275.03178 * 12 10 9 14 14 H 1.08001 * 120.00015 * 359.72207 * 13 12 10 15 15 C 1.38810 * 120.00126 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99895 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46912 * 59.99381 * 17 15 13 19 19 H 1.48501 * 109.47122 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46823 * 299.99573 * 17 15 13 21 21 C 1.53038 * 109.53069 * 298.61670 * 10 9 8 22 22 C 1.46926 * 120.62869 * 186.35360 * 7 5 4 23 23 H 1.09002 * 109.58310 * 113.79715 * 22 7 5 24 24 C 1.52999 * 109.70477 * 353.43883 * 22 7 5 25 25 N 1.31807 * 106.96411 * 359.63557 * 4 3 2 26 26 N 1.28462 * 110.07224 * 0.23081 * 25 4 3 27 27 H 0.97005 * 124.88314 * 180.02562 * 26 25 4 28 28 H 1.08995 * 109.47386 * 270.26521 * 1 2 3 29 29 H 1.08999 * 109.46631 * 30.26611 * 1 2 3 30 30 H 1.09006 * 109.47258 * 150.26135 * 1 2 3 31 31 H 1.08002 * 127.24811 * 0.03598 * 3 2 1 32 32 H 1.09006 * 109.58790 * 246.19970 * 8 7 5 33 33 H 1.08994 * 109.59265 * 6.48569 * 8 7 5 34 34 H 1.08998 * 109.50544 * 294.69226 * 9 8 7 35 35 H 1.09001 * 109.49097 * 174.59672 * 9 8 7 36 36 H 0.97001 * 119.99557 * 95.02941 * 12 10 9 37 37 H 0.96993 * 120.00104 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.50145 * 181.32565 * 21 10 9 39 39 H 1.09005 * 109.49667 * 301.38995 * 21 10 9 40 40 H 1.08992 * 109.47553 * 303.50909 * 24 22 7 41 41 H 1.09004 * 109.46755 * 63.51230 * 24 22 7 42 42 H 1.09005 * 109.46773 * 183.50456 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5852 -0.0037 5 6 4.8765 1.3809 -0.0071 6 8 4.8259 2.5891 0.1188 7 7 6.0682 0.7677 -0.1500 8 6 6.1397 -0.6706 -0.4412 9 6 7.0051 -0.8786 -1.6880 10 6 8.3663 -0.2119 -1.4762 11 1 8.8480 -0.6410 -0.5976 12 7 9.2086 -0.4374 -2.6535 13 6 9.9372 -1.5917 -2.7633 14 1 9.8944 -2.3338 -1.9798 15 6 10.7357 -1.8051 -3.8785 16 7 10.7921 -0.8982 -4.8307 17 14 11.7301 -3.3793 -4.0278 18 1 10.8130 -4.5472 -4.0143 19 1 12.4928 -3.3640 -5.3019 20 1 12.6746 -3.4782 -2.8862 21 6 8.1727 1.2919 -1.2683 22 6 7.3204 1.5247 -0.0169 23 1 7.8630 1.1813 0.8639 24 6 7.0092 3.0163 0.1216 25 7 3.5419 -0.7298 0.0024 26 7 2.3080 -1.0871 0.0046 27 1 1.9965 -2.0058 0.0093 28 1 -0.3634 0.0048 1.0276 29 1 -0.3632 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5098 31 1 2.0058 2.1259 0.0005 32 1 6.5862 -1.1930 0.4050 33 1 5.1367 -1.0573 -0.6213 34 1 6.5120 -0.4327 -2.5518 35 1 7.1454 -1.9458 -1.8594 36 1 9.2501 0.2310 -3.3553 37 1 11.3498 -1.0474 -5.6102 38 1 9.1441 1.7697 -1.1410 39 1 7.6690 1.7173 -2.1364 40 1 6.4183 3.3451 -0.7333 41 1 6.4462 3.1863 1.0394 42 1 7.9414 3.5801 0.1575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044498343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:27 Heat of formation + Delta-G solvation = 70.613926 kcal Electronic energy + Delta-G solvation = -23785.690047 eV Core-core repulsion = 20382.462976 eV Total energy + Delta-G solvation = -3403.227071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.86489 -40.02487 -37.22502 -34.45698 -33.43370 -32.54552 -31.85175 -31.43487 -29.17773 -27.36628 -26.95365 -24.61169 -23.78920 -22.74715 -21.52144 -21.18161 -19.91701 -18.62524 -17.97459 -17.06702 -16.34083 -16.08808 -15.66825 -14.82352 -14.75700 -14.11390 -14.08168 -13.68642 -13.62666 -13.51937 -13.30161 -13.10274 -13.00887 -12.61409 -12.40351 -12.05503 -11.97335 -11.56717 -11.40830 -10.88220 -10.85999 -10.70053 -10.56760 -10.22545 -10.10300 -9.77147 -9.64361 -9.48633 -9.13720 -9.04257 -8.82985 -8.26823 -6.92479 -5.73673 -3.02389 1.49370 1.94786 2.61934 3.20380 3.45005 3.48795 3.49802 3.50592 4.28815 4.42581 4.60605 4.66733 5.03155 5.08785 5.25708 5.35360 5.40244 5.43225 5.48124 5.52949 5.63965 5.69478 5.71014 5.82367 5.98480 6.05271 6.11730 6.21527 6.30359 6.41955 6.50044 6.55845 6.59162 6.63439 6.82343 6.88338 7.04074 7.16116 7.60593 7.71556 7.77676 8.37609 8.44886 9.55704 10.14346 10.49378 11.49010 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.003748 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.123304 B = 7468.269337 C = 8418.185668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.012 3.988 3 C -0.180 4.180 4 C -0.002 4.002 5 C 0.598 3.402 6 O -0.534 6.534 7 N -0.587 5.587 8 C 0.087 3.913 9 C -0.148 4.148 10 C 0.178 3.822 11 H 0.047 0.953 12 N -0.724 5.724 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.906 3.094 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.134 4.134 22 C 0.146 3.854 23 H 0.072 0.928 24 C -0.135 4.135 25 N -0.255 5.255 26 N -0.387 5.387 27 H 0.443 0.557 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.161 0.839 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 1.737 11.877 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.208 4.208 4 C -0.162 4.162 5 C 0.384 3.616 6 O -0.410 6.410 7 N -0.320 5.320 8 C -0.037 4.037 9 C -0.189 4.189 10 C 0.068 3.932 11 H 0.065 0.935 12 N -0.365 5.365 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.173 4.173 22 C 0.044 3.956 23 H 0.090 0.910 24 C -0.192 4.192 25 N -0.090 5.090 26 N -0.100 5.100 27 H 0.287 0.713 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.778 1.307 11.951 23.145 hybrid contribution 0.029 -0.725 -0.508 0.886 sum -19.749 0.582 11.443 22.832 Atomic orbital electron populations 1.20350 0.86650 1.03982 1.03302 1.21455 0.95331 0.87278 1.07357 1.21497 0.90473 0.99684 1.09113 1.22170 0.95496 0.89619 1.08964 1.17048 0.81480 0.86142 0.76945 1.90829 1.86049 1.12876 1.51262 1.48051 1.04956 1.10538 1.68408 1.22541 1.03856 0.79131 0.98130 1.22640 0.97882 1.02290 0.96098 1.20199 0.89877 0.91670 0.91503 0.93527 1.42431 1.51625 1.21850 1.20547 1.19201 1.18744 0.96000 1.02959 0.91254 1.24740 1.00794 0.98313 0.97167 1.69654 1.43691 1.34645 1.10197 0.86282 0.79997 0.83152 0.76840 1.21337 1.21748 1.21295 1.22290 0.99524 0.98564 0.96938 1.21347 0.83500 0.92549 0.98242 0.91048 1.22205 0.99838 0.93009 1.04187 1.73520 1.00624 1.15048 1.19838 1.43537 1.03291 1.09525 1.53663 0.71322 0.90335 0.89517 0.91112 0.82107 0.92028 0.86409 0.92514 0.90870 0.78295 0.93498 0.90629 0.91759 0.90997 0.91441 0.93769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.01 0.38 0.01 16 2 C 0.01 0.10 7.23 -82.21 -0.59 -0.50 16 3 C -0.18 -2.07 10.74 -39.37 -0.42 -2.49 16 4 C 0.00 -0.03 6.83 -82.77 -0.57 -0.59 16 5 C 0.60 9.66 7.61 -12.39 -0.09 9.57 16 6 O -0.53 -9.38 12.35 5.30 0.07 -9.32 16 7 N -0.59 -9.33 2.97 -166.37 -0.49 -9.83 16 8 C 0.09 1.34 6.13 -3.71 -0.02 1.32 16 9 C -0.15 -2.72 5.66 -26.61 -0.15 -2.87 16 10 C 0.18 3.60 2.73 -67.89 -0.19 3.41 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 N -0.72 -18.39 5.12 -53.38 -0.27 -18.66 16 13 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 17 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.13 -2.38 4.84 -26.61 -0.13 -2.51 16 22 C 0.15 2.30 3.49 -67.60 -0.24 2.07 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 24 C -0.14 -2.05 7.60 37.16 0.28 -1.77 16 25 N -0.25 -3.17 8.71 33.42 0.29 -2.88 16 26 N -0.39 -3.39 6.83 33.50 0.23 -3.16 16 27 H 0.44 2.22 8.96 -190.44 -1.71 0.52 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.12 1.74 4.14 -72.73 -0.30 1.44 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.38 10.44 7.80 -40.82 -0.32 10.12 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 41 H 0.07 1.05 6.76 -51.93 -0.35 0.70 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -33.41 336.72 -9.04 -42.45 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.64 Total: 8.24 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.99 Total: -1.63 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: 0.48 Total: -62.28 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.41 -9.04 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044498343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.064 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds