Wall clock time and date at job start Tue Mar 31 2020 04:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35362 * 126.38951 * 2 1 4 4 C 1.41499 * 105.50311 * 180.15616 * 3 2 1 5 5 C 1.47712 * 126.51918 * 179.90557 * 4 3 2 6 6 O 1.21574 * 120.00077 * 6.85462 * 5 4 3 7 7 N 1.34780 * 120.00306 * 186.86323 * 5 4 3 8 8 C 1.46920 * 120.62642 * 6.32761 * 7 5 4 9 9 C 1.53194 * 108.76532 * 126.41140 * 8 7 5 10 10 C 1.53041 * 109.31119 * 54.64979 * 9 8 7 11 11 H 1.09004 * 109.45999 * 58.63589 * 10 9 8 12 12 N 1.46505 * 109.45865 * 178.60269 * 10 9 8 13 13 C 1.36938 * 120.00103 * 275.03178 * 12 10 9 14 14 H 1.08001 * 120.00015 * 359.72207 * 13 12 10 15 15 C 1.38810 * 120.00126 * 180.02562 * 13 12 10 16 16 N 1.31622 * 119.99895 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46912 * 59.99381 * 17 15 13 19 19 H 1.48501 * 109.47122 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46823 * 299.99573 * 17 15 13 21 21 C 1.53038 * 109.53069 * 298.61670 * 10 9 8 22 22 C 1.46926 * 120.62869 * 186.35360 * 7 5 4 23 23 H 1.09002 * 109.58310 * 113.79715 * 22 7 5 24 24 C 1.52999 * 109.70477 * 353.43883 * 22 7 5 25 25 N 1.31807 * 106.96411 * 359.63557 * 4 3 2 26 26 N 1.28462 * 110.07224 * 0.23081 * 25 4 3 27 27 H 0.97005 * 124.88314 * 180.02562 * 26 25 4 28 28 H 1.08995 * 109.47386 * 270.26521 * 1 2 3 29 29 H 1.08999 * 109.46631 * 30.26611 * 1 2 3 30 30 H 1.09006 * 109.47258 * 150.26135 * 1 2 3 31 31 H 1.08002 * 127.24811 * 0.03598 * 3 2 1 32 32 H 1.09006 * 109.58790 * 246.19970 * 8 7 5 33 33 H 1.08994 * 109.59265 * 6.48569 * 8 7 5 34 34 H 1.08998 * 109.50544 * 294.69226 * 9 8 7 35 35 H 1.09001 * 109.49097 * 174.59672 * 9 8 7 36 36 H 0.97001 * 119.99557 * 95.02941 * 12 10 9 37 37 H 0.96993 * 120.00104 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.50145 * 181.32565 * 21 10 9 39 39 H 1.09005 * 109.49667 * 301.38995 * 21 10 9 40 40 H 1.08992 * 109.47553 * 303.50909 * 24 22 7 41 41 H 1.09004 * 109.46755 * 63.51230 * 24 22 7 42 42 H 1.09005 * 109.46773 * 183.50456 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5852 -0.0037 5 6 4.8765 1.3809 -0.0071 6 8 4.8259 2.5891 0.1188 7 7 6.0682 0.7677 -0.1500 8 6 6.1397 -0.6706 -0.4412 9 6 7.0051 -0.8786 -1.6880 10 6 8.3663 -0.2119 -1.4762 11 1 8.8480 -0.6410 -0.5976 12 7 9.2086 -0.4374 -2.6535 13 6 9.9372 -1.5917 -2.7633 14 1 9.8944 -2.3338 -1.9798 15 6 10.7357 -1.8051 -3.8785 16 7 10.7921 -0.8982 -4.8307 17 14 11.7301 -3.3793 -4.0278 18 1 10.8130 -4.5472 -4.0143 19 1 12.4928 -3.3640 -5.3019 20 1 12.6746 -3.4782 -2.8862 21 6 8.1727 1.2919 -1.2683 22 6 7.3204 1.5247 -0.0169 23 1 7.8630 1.1813 0.8639 24 6 7.0092 3.0163 0.1216 25 7 3.5419 -0.7298 0.0024 26 7 2.3080 -1.0871 0.0046 27 1 1.9965 -2.0058 0.0093 28 1 -0.3634 0.0048 1.0276 29 1 -0.3632 0.8876 -0.5180 30 1 -0.3634 -0.8924 -0.5098 31 1 2.0058 2.1259 0.0005 32 1 6.5862 -1.1930 0.4050 33 1 5.1367 -1.0573 -0.6213 34 1 6.5120 -0.4327 -2.5518 35 1 7.1454 -1.9458 -1.8594 36 1 9.2501 0.2310 -3.3553 37 1 11.3498 -1.0474 -5.6102 38 1 9.1441 1.7697 -1.1410 39 1 7.6690 1.7173 -2.1364 40 1 6.4183 3.3451 -0.7333 41 1 6.4462 3.1863 1.0394 42 1 7.9414 3.5801 0.1575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044498343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:26 Heat of formation + Delta-G solvation = 47.958963 kcal Electronic energy + Delta-G solvation = -23786.672440 eV Core-core repulsion = 20382.462976 eV Total energy + Delta-G solvation = -3404.209464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.70739 -41.30455 -38.68603 -36.18874 -34.51437 -33.70393 -33.34718 -32.46171 -30.97378 -28.42291 -27.95396 -26.12836 -25.29401 -24.27095 -22.65958 -22.14006 -21.46525 -19.87165 -19.07690 -18.79838 -17.46931 -17.06326 -16.91334 -16.70107 -16.03340 -15.50539 -15.41881 -15.19540 -14.82632 -14.70726 -14.58461 -14.02664 -13.89990 -13.68100 -13.49583 -13.40813 -13.10698 -12.98717 -12.85324 -12.71969 -12.61448 -12.22061 -12.10071 -12.03093 -11.77300 -11.38126 -11.31877 -10.80609 -10.39397 -10.30439 -9.88395 -9.57728 -9.00267 -7.92602 -5.21794 0.50400 1.14866 1.47597 1.50827 1.56801 1.78079 2.16502 2.35645 2.57258 3.31116 3.40579 3.72823 3.74121 3.86790 4.02200 4.11807 4.14813 4.29393 4.33963 4.45845 4.57884 4.61996 4.64826 4.73239 4.82744 4.87482 4.95359 5.01449 5.05480 5.09338 5.14825 5.16418 5.26037 5.40766 5.44431 5.49009 5.53369 5.73905 6.17262 6.28556 6.40905 6.86686 7.17368 7.34401 8.09605 8.33940 9.30964 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021237 B = 0.003748 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.123304 B = 7468.269337 C = 8418.185668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 C -0.205 4.205 4 C -0.033 4.033 5 C 0.593 3.407 6 O -0.555 6.555 7 N -0.592 5.592 8 C 0.098 3.902 9 C -0.136 4.136 10 C 0.173 3.827 11 H 0.049 0.951 12 N -0.737 5.737 13 C -0.238 4.238 14 H 0.078 0.922 15 C -0.078 4.078 16 N -0.973 5.973 17 Si 0.973 3.027 18 H -0.277 1.277 19 H -0.298 1.298 20 H -0.277 1.277 21 C -0.122 4.122 22 C 0.149 3.851 23 H 0.088 0.912 24 C -0.123 4.123 25 N -0.271 5.271 26 N -0.370 5.370 27 H 0.460 0.540 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.163 0.837 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 0.325 13.404 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.233 4.233 4 C -0.192 4.192 5 C 0.380 3.620 6 O -0.433 6.433 7 N -0.324 5.324 8 C -0.025 4.025 9 C -0.177 4.177 10 C 0.065 3.935 11 H 0.067 0.933 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.096 0.904 15 C -0.270 4.270 16 N -0.623 5.623 17 Si 0.802 3.198 18 H -0.203 1.203 19 H -0.224 1.224 20 H -0.203 1.203 21 C -0.161 4.161 22 C 0.046 3.954 23 H 0.106 0.894 24 C -0.180 4.180 25 N -0.108 5.108 26 N -0.086 5.086 27 H 0.308 0.692 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.181 0.819 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.201 0.799 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.681 -0.135 13.530 25.556 hybrid contribution 0.469 -0.280 -0.934 1.082 sum -21.212 -0.414 12.596 24.673 Atomic orbital electron populations 1.20542 0.83250 1.05501 1.04823 1.21970 0.97001 0.85959 1.04152 1.21699 0.90040 1.00885 1.10669 1.21979 0.95372 0.90375 1.11452 1.17385 0.82118 0.86200 0.76257 1.90806 1.86534 1.13820 1.52158 1.48094 1.05087 1.10596 1.68615 1.22474 1.03977 0.79220 0.96841 1.22426 0.97081 1.01085 0.97080 1.20417 0.89927 0.93508 0.89641 0.93293 1.42646 1.52386 1.20988 1.21625 1.19609 1.17991 0.96571 1.02767 0.90396 1.25574 1.02599 1.01632 0.97199 1.69827 1.44975 1.36743 1.10795 0.85212 0.78516 0.79543 0.76506 1.20304 1.22442 1.20314 1.22146 0.99849 0.96605 0.97544 1.21346 0.83470 0.93116 0.97472 0.89421 1.22053 1.00189 0.92678 1.03121 1.73303 1.02536 1.14330 1.20621 1.43607 1.02365 1.10733 1.51901 0.69182 0.88643 0.88744 0.88879 0.81913 0.90661 0.85211 0.94353 0.91816 0.79854 0.94136 0.90662 0.93272 0.92925 0.91675 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.44 71.24 0.74 0.33 16 2 C 0.04 0.52 7.23 41.40 0.30 0.82 16 3 C -0.20 -4.47 10.74 22.41 0.24 -4.23 16 4 C -0.03 -0.90 6.83 42.46 0.29 -0.61 16 5 C 0.59 19.14 7.61 86.75 0.66 19.80 16 6 O -0.56 -19.74 12.35 -3.95 -0.05 -19.79 16 7 N -0.59 -18.57 2.97 -798.55 -2.37 -20.94 16 8 C 0.10 2.94 6.13 86.36 0.53 3.47 16 9 C -0.14 -5.01 5.66 30.67 0.17 -4.83 16 10 C 0.17 7.05 2.73 45.02 0.12 7.17 16 11 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 12 N -0.74 -38.09 5.12 -322.80 -1.65 -39.74 16 13 C -0.24 -13.27 9.93 84.03 0.83 -12.44 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 15 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 17 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 C -0.12 -4.38 4.84 30.67 0.15 -4.23 16 22 C 0.15 4.61 3.49 44.97 0.16 4.76 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 C -0.12 -3.70 7.60 71.98 0.55 -3.16 16 25 N -0.27 -6.32 8.71 -48.18 -0.42 -6.74 16 26 N -0.37 -5.52 6.83 -47.93 -0.33 -5.85 16 27 H 0.46 3.15 8.96 -219.99 -1.97 1.18 16 28 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.11 8.14 -2.38 -0.02 0.09 16 31 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.13 3.68 4.14 -29.29 -0.12 3.56 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.37 20.81 7.80 -92.71 -0.72 20.09 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.37 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.78 6.75 -2.39 -0.02 1.77 16 41 H 0.06 2.00 6.76 -2.38 -0.02 1.98 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -73.11 336.72 0.94 -72.17 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -1.76 Total: 29.98 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.21 Total: 2.79 kcal Atomic # 7 Polarization: -129.09 SS G_CDS: -4.49 Total: -133.58 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.11 0.94 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044498343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.129 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds