Wall clock time and date at job start Tue Mar 31 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35358 * 127.24982 * 2 1 4 4 N 1.35035 * 107.23348 * 179.97438 * 3 2 1 5 5 H 0.96995 * 124.88988 * 180.02562 * 4 3 2 6 6 N 1.28476 * 110.22495 * 359.75006 * 4 3 2 7 7 C 1.31810 * 110.07388 * 0.41936 * 6 4 3 8 8 C 1.47703 * 126.51755 * 179.85568 * 7 6 4 9 9 O 1.21572 * 120.00236 * 173.82082 * 8 7 6 10 10 N 1.34779 * 120.00142 * 353.81972 * 8 7 6 11 11 C 1.46922 * 120.63190 * 174.69387 * 10 8 7 12 12 C 1.53197 * 108.89550 * 233.68437 * 11 10 8 13 13 C 1.53043 * 109.30945 * 305.29365 * 12 11 10 14 14 H 1.08998 * 109.45920 * 301.35870 * 13 12 11 15 15 N 1.46497 * 109.45833 * 181.38596 * 13 12 11 16 16 C 1.36938 * 120.00422 * 85.00106 * 15 13 12 17 17 H 1.08007 * 119.99403 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00180 * 179.97438 * 16 15 13 19 19 N 1.31612 * 120.00205 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99695 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47055 * 120.00131 * 20 18 16 23 23 H 1.48504 * 109.47130 * 239.99875 * 20 18 16 24 24 C 1.53040 * 109.53863 * 61.36686 * 13 12 11 25 25 C 1.47202 * 120.81150 * 354.84262 * 10 8 7 26 26 H 1.08997 * 109.65747 * 6.46070 * 25 10 8 27 27 C 1.52999 * 109.55865 * 246.15232 * 25 10 8 28 28 H 1.09006 * 109.46491 * 270.02160 * 1 2 3 29 29 H 1.09000 * 109.47236 * 30.01937 * 1 2 3 30 30 H 1.08996 * 109.47025 * 150.02227 * 1 2 3 31 31 H 1.08003 * 126.38688 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.58835 * 113.82343 * 11 10 8 33 33 H 1.09000 * 109.58641 * 353.53912 * 11 10 8 34 34 H 1.08996 * 109.49579 * 65.24261 * 12 11 10 35 35 H 1.09001 * 109.49661 * 185.31032 * 12 11 10 36 36 H 0.97002 * 119.99597 * 265.00135 * 15 13 12 37 37 H 0.97007 * 119.99932 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.50153 * 58.58318 * 24 13 12 39 39 H 1.08997 * 109.49884 * 178.65136 * 24 13 12 40 40 H 1.09004 * 109.47548 * 300.62674 * 27 25 10 41 41 H 1.09002 * 109.46968 * 60.63335 * 27 25 10 42 42 H 1.09000 * 109.46998 * 180.62960 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6152 0.0006 5 1 4.3887 1.1729 0.0011 6 7 3.5998 -0.6695 0.0062 7 6 2.3635 -1.1264 0.0005 8 6 1.9505 -2.5446 0.0011 9 8 0.7750 -2.8354 0.1088 10 7 2.8769 -3.5163 -0.1177 11 6 2.4970 -4.9309 -0.0027 12 6 3.3777 -5.5963 1.0597 13 6 4.8504 -5.3704 0.7101 14 1 5.0573 -5.7857 -0.2762 15 7 5.6957 -6.0336 1.7060 16 6 6.0025 -7.3611 1.5689 17 1 5.6209 -7.9193 0.7266 18 6 6.8038 -7.9894 2.5123 19 7 7.2683 -7.3093 3.5389 20 14 7.2217 -9.8004 2.3254 21 1 6.5795 -10.3325 1.0967 22 1 8.6945 -9.9607 2.2239 23 1 6.7228 -10.5481 3.5076 24 6 5.1508 -3.8698 0.7045 25 6 4.2902 -3.1848 -0.3619 26 1 4.4288 -2.1052 -0.3051 27 6 4.7006 -3.6822 -1.7494 28 1 -0.3632 0.0004 1.0278 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5135 31 1 2.0221 2.1137 0.0004 32 1 2.6431 -5.4276 -0.9618 33 1 1.4502 -5.0053 0.2916 34 1 3.1641 -5.1592 2.0350 35 1 3.1696 -6.6659 1.0868 36 1 6.0380 -5.5324 2.4626 37 1 7.8286 -7.7483 4.1980 38 1 4.9206 -3.4490 1.6832 39 1 6.2053 -3.7107 0.4790 40 1 4.5568 -4.7613 -1.8058 41 1 4.0872 -3.1937 -2.5065 42 1 5.7502 -3.4460 -1.9242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044599579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:41 Heat of formation + Delta-G solvation = 35.554397 kcal Electronic energy + Delta-G solvation = -24060.887441 eV Core-core repulsion = 20656.140075 eV Total energy + Delta-G solvation = -3404.747366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.67570 -41.10085 -38.90959 -36.31552 -34.00235 -33.94656 -33.17533 -32.32152 -30.90482 -28.67188 -27.98885 -26.15543 -25.44054 -23.72440 -23.23551 -21.86925 -21.17271 -19.80103 -19.20275 -18.62628 -17.98246 -16.97116 -16.76081 -16.73077 -15.84790 -15.67657 -15.44020 -15.16316 -14.77156 -14.48322 -14.35531 -14.25565 -13.93699 -13.82330 -13.73249 -13.21997 -13.05438 -12.91557 -12.88646 -12.64130 -12.46696 -12.14010 -12.03859 -11.91987 -11.77581 -11.66832 -11.16453 -10.89291 -10.60881 -10.40621 -9.80660 -9.60411 -9.00546 -7.93207 -5.21806 0.50144 1.21869 1.47516 1.48300 1.58190 1.81292 2.22315 2.33085 2.56857 3.33640 3.40239 3.73077 3.84785 3.93267 4.06016 4.13359 4.20500 4.29621 4.42947 4.52766 4.56460 4.57927 4.66025 4.67890 4.82327 4.89155 4.94181 5.00784 5.07308 5.07936 5.17626 5.22874 5.24585 5.34590 5.52042 5.53872 5.58629 5.70313 6.22197 6.28773 6.41787 6.89264 7.15480 7.34629 8.10101 8.34025 9.30667 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.003657 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.462534 B = 7655.082593 C = 7974.028170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.176 4.176 3 C 0.015 3.985 4 N -0.365 5.365 5 H 0.464 0.536 6 N -0.273 5.273 7 C -0.036 4.036 8 C 0.592 3.408 9 O -0.569 6.569 10 N -0.590 5.590 11 C 0.121 3.879 12 C -0.137 4.137 13 C 0.175 3.825 14 H 0.054 0.946 15 N -0.737 5.737 16 C -0.235 4.235 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.296 1.296 24 C -0.117 4.117 25 C 0.110 3.890 26 H 0.155 0.845 27 C -0.155 4.155 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.233 0.767 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 21.332 -11.537 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.187 4.187 3 C -0.131 4.131 4 N -0.080 5.080 5 H 0.313 0.687 6 N -0.110 5.110 7 C -0.195 4.195 8 C 0.380 3.620 9 O -0.447 6.447 10 N -0.322 5.322 11 C -0.002 4.002 12 C -0.178 4.178 13 C 0.066 3.934 14 H 0.071 0.929 15 N -0.376 5.376 16 C -0.367 4.367 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.220 1.220 23 H -0.224 1.224 24 C -0.156 4.156 25 C 0.006 3.994 26 H 0.171 0.829 27 C -0.213 4.213 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.202 0.798 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.668 20.622 -11.574 25.186 hybrid contribution 0.199 -0.816 0.836 1.185 sum -8.470 19.805 -10.738 24.069 Atomic orbital electron populations 1.20113 0.87767 1.03007 1.02257 1.20696 0.98332 0.90707 1.08920 1.23312 0.82915 1.01644 1.05179 1.43554 1.09919 1.03713 1.50863 0.68704 1.72976 1.21897 0.95282 1.20852 1.21762 0.90789 0.94421 1.12511 1.17405 0.84765 0.83862 0.75955 1.90708 1.18056 1.83233 1.52723 1.48207 1.08919 1.05912 1.69120 1.21548 0.99270 0.80072 0.99326 1.22449 0.97689 0.99981 0.97722 1.20438 0.88728 0.91838 0.92369 0.92851 1.42665 1.58781 1.08295 1.27846 1.19667 1.23391 0.87486 1.06113 0.90514 1.25533 1.01574 1.02229 0.97571 1.69830 1.40500 1.36938 1.14969 0.85108 0.77179 0.80364 0.77347 1.18922 1.22044 1.22395 1.22014 1.00090 0.94913 0.98626 1.22420 0.77873 1.04653 0.94432 0.82916 1.22097 1.02379 1.01542 0.95243 0.91789 0.88900 0.92874 0.75054 0.90124 0.90118 0.94328 0.91969 0.79837 0.94159 0.93550 0.90544 0.92838 0.92125 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 9.88 71.24 0.70 -0.68 16 2 C -0.18 -3.61 6.25 -19.72 -0.12 -3.73 16 3 C 0.01 0.17 11.97 83.54 1.00 1.17 16 4 N -0.37 -4.57 6.83 -57.51 -0.39 -4.96 16 5 H 0.46 1.90 8.96 -219.99 -1.97 -0.07 16 6 N -0.27 -6.04 8.62 -48.18 -0.42 -6.46 16 7 C -0.04 -0.98 6.88 42.45 0.29 -0.68 16 8 C 0.59 19.56 7.70 86.74 0.67 20.23 16 9 O -0.57 -21.35 14.63 -3.94 -0.06 -21.40 16 10 N -0.59 -18.72 2.69 -797.90 -2.15 -20.87 16 11 C 0.12 3.96 5.99 86.36 0.52 4.47 16 12 C -0.14 -5.29 5.66 30.67 0.17 -5.12 16 13 C 0.17 7.05 2.52 45.02 0.11 7.17 16 14 H 0.05 2.14 6.44 -2.39 -0.02 2.13 16 15 N -0.74 -37.89 5.12 -322.81 -1.65 -39.54 16 16 C -0.23 -13.13 9.93 84.03 0.83 -12.29 16 17 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 19 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 20 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 24 C -0.12 -4.04 5.02 30.67 0.15 -3.88 16 25 C 0.11 3.14 3.11 44.92 0.14 3.28 16 26 H 0.15 4.06 3.77 -73.86 -0.28 3.78 16 27 C -0.15 -3.86 9.02 71.98 0.65 -3.21 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.29 6.85 -2.39 -0.02 1.28 16 31 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 32 H 0.08 2.38 7.48 -2.39 -0.02 2.36 16 33 H 0.08 2.73 7.04 -2.39 -0.02 2.71 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.37 20.64 7.80 -92.71 -0.72 19.92 16 37 H 0.25 15.02 8.31 -92.70 -0.77 14.24 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 40 H 0.05 1.44 5.72 -2.38 -0.01 1.42 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -75.65 334.65 1.33 -74.32 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -1.91 Total: 27.52 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.59 Total: 2.72 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -4.33 Total: -131.86 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.40 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.65 1.33 -74.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044599579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.875 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds