Wall clock time and date at job start Tue Mar 31 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35571 * 125.82027 * 2 1 4 4 N 1.35403 * 107.15844 * 179.77096 * 3 2 1 5 5 H 0.96998 * 126.44172 * 180.22170 * 4 3 2 6 6 C 1.36667 * 107.11949 * 0.36183 * 4 3 2 7 7 C 1.47410 * 125.86059 * 179.89657 * 6 4 3 8 8 O 1.21605 * 120.00020 * 6.65256 * 7 6 4 9 9 N 1.34779 * 120.00030 * 186.65555 * 7 6 4 10 10 C 1.46924 * 120.62724 * 354.35940 * 9 7 6 11 11 C 1.53194 * 108.77111 * 126.41470 * 10 9 7 12 12 C 1.53041 * 109.31492 * 54.63482 * 11 10 9 13 13 H 1.09007 * 109.45596 * 58.63895 * 12 11 10 14 14 N 1.46503 * 109.46201 * 178.60980 * 12 11 10 15 15 C 1.36934 * 120.00331 * 275.02840 * 14 12 11 16 16 H 1.08007 * 119.99626 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00348 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99912 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00336 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46917 * 60.00110 * 19 17 15 21 21 H 1.48496 * 109.47088 * 299.99949 * 19 17 15 22 22 H 1.48502 * 109.47244 * 179.97438 * 19 17 15 23 23 C 1.53037 * 109.52583 * 298.62637 * 12 11 10 24 24 C 1.46922 * 120.63120 * 174.38528 * 9 7 6 25 25 H 1.08993 * 109.58821 * 113.79982 * 24 9 7 26 26 C 1.53006 * 109.58860 * 353.37148 * 24 9 7 27 27 N 1.31612 * 108.27557 * 359.63491 * 6 4 3 28 28 H 1.08992 * 109.47025 * 270.01900 * 1 2 3 29 29 H 1.09002 * 109.47473 * 30.02393 * 1 2 3 30 30 H 1.09005 * 109.46339 * 150.02060 * 1 2 3 31 31 H 1.07995 * 126.41724 * 0.02725 * 3 2 1 32 32 H 1.08996 * 109.59012 * 6.63251 * 10 9 7 33 33 H 1.09001 * 109.58737 * 246.20165 * 10 9 7 34 34 H 1.08992 * 109.49990 * 294.67792 * 11 10 9 35 35 H 1.09006 * 109.49808 * 174.58375 * 11 10 9 36 36 H 0.97000 * 119.99738 * 95.02568 * 14 12 11 37 37 H 0.97008 * 119.99721 * 0.02562 * 18 17 15 38 38 H 1.09003 * 109.49789 * 181.31983 * 23 12 11 39 39 H 1.08998 * 109.49710 * 301.42209 * 23 12 11 40 40 H 1.08993 * 109.46560 * 67.10714 * 26 24 9 41 41 H 1.08994 * 109.46964 * 187.11138 * 26 24 9 42 42 H 1.09003 * 109.46701 * 307.11194 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0993 0.0000 4 7 3.5833 0.6660 0.0052 5 1 4.3788 1.2210 0.0095 6 6 3.5465 -0.7001 0.0000 7 6 4.7175 -1.5955 0.0007 8 8 5.8355 -1.1343 0.1283 9 7 4.5492 -2.9253 -0.1400 10 6 3.2016 -3.5100 -0.1715 11 6 3.0643 -4.3642 -1.4357 12 6 4.1969 -5.3927 -1.4772 13 1 4.1534 -6.0168 -0.5845 14 7 4.0496 -6.2332 -2.6680 15 6 3.2306 -7.3301 -2.6349 16 1 2.6928 -7.5754 -1.7309 17 6 3.0906 -8.1262 -3.7634 18 7 3.7448 -7.8264 -4.8655 19 14 1.9739 -9.6229 -3.7180 20 1 0.5862 -9.1959 -3.4059 21 1 2.4494 -10.5637 -2.6721 22 1 1.9977 -10.2987 -5.0401 23 6 5.5440 -4.6683 -1.5278 24 6 5.7096 -3.8178 -0.2644 25 1 5.7662 -4.4675 0.6089 26 6 6.9885 -2.9846 -0.3712 27 7 2.2861 -1.0791 0.0000 28 1 -0.3633 0.0003 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3632 -0.8903 -0.5136 31 1 1.9710 2.1278 0.0004 32 1 2.4579 -2.7134 -0.1863 33 1 3.0537 -4.1346 0.7095 34 1 3.1221 -3.7237 -2.3156 35 1 2.1043 -4.8806 -1.4234 36 1 4.5322 -6.0127 -3.4800 37 1 4.3250 -7.0493 -4.8889 38 1 6.3493 -5.4010 -1.5809 39 1 5.5782 -4.0248 -2.4069 40 1 7.1647 -2.4673 0.5719 41 1 7.8317 -3.6397 -0.5894 42 1 6.8797 -2.2532 -1.1720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044772254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:13 Heat of formation + Delta-G solvation = 57.170564 kcal Electronic energy + Delta-G solvation = -24002.145414 eV Core-core repulsion = 20598.335396 eV Total energy + Delta-G solvation = -3403.810019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56384 -40.12191 -37.42963 -34.78118 -33.53069 -33.01359 -32.01025 -31.01216 -29.01692 -27.40534 -26.78983 -24.41370 -23.50634 -22.86836 -21.67802 -20.48495 -20.32972 -19.52635 -17.83973 -17.23028 -16.37199 -16.09314 -15.82470 -15.00524 -14.64264 -14.34866 -14.18619 -13.99459 -13.61050 -13.37583 -13.35415 -13.05778 -13.02405 -12.76269 -12.47037 -12.14141 -12.04780 -11.71175 -11.43806 -10.82073 -10.78266 -10.55690 -10.52107 -10.38492 -10.04069 -9.95630 -9.59137 -9.31634 -9.08451 -8.77933 -8.72614 -8.37786 -6.98229 -6.05849 -3.05258 1.18802 2.32488 2.41000 3.27272 3.31195 3.54286 3.57989 3.75328 4.02629 4.57931 4.69768 4.79070 4.95107 5.08964 5.15134 5.34575 5.44503 5.49712 5.52474 5.61325 5.64280 5.69461 5.73305 5.76100 5.88020 5.98945 6.06942 6.13309 6.22546 6.34547 6.43204 6.46693 6.51898 6.64307 6.76550 6.91902 7.01424 7.13818 7.41342 7.62454 7.85213 8.11066 8.79811 9.27374 10.13886 10.29510 11.42603 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017982 B = 0.004191 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.737528 B = 6679.440159 C = 7878.141412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.002 4.002 3 C -0.029 4.029 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.161 3.839 7 C 0.600 3.400 8 O -0.546 6.546 9 N -0.571 5.571 10 C 0.053 3.947 11 C -0.142 4.142 12 C 0.181 3.819 13 H 0.048 0.952 14 N -0.736 5.736 15 C -0.328 4.328 16 H 0.064 0.936 17 C -0.046 4.046 18 N -0.945 5.945 19 Si 1.079 2.921 20 H -0.295 1.295 21 H -0.296 1.296 22 H -0.286 1.286 23 C -0.135 4.135 24 C 0.147 3.853 25 H 0.076 0.924 26 C -0.137 4.137 27 N -0.434 5.434 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.157 0.843 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.366 0.634 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 19.225 12.160 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C -0.168 4.168 4 N -0.125 5.125 5 H 0.269 0.731 6 C -0.101 4.101 7 C 0.385 3.615 8 O -0.424 6.424 9 N -0.302 5.302 10 C -0.069 4.069 11 C -0.183 4.183 12 C 0.071 3.929 13 H 0.066 0.934 14 N -0.378 5.378 15 C -0.459 4.459 16 H 0.082 0.918 17 C -0.243 4.243 18 N -0.591 5.591 19 Si 0.910 3.090 20 H -0.223 1.223 21 H -0.223 1.223 22 H -0.211 1.211 23 C -0.174 4.174 24 C 0.044 3.956 25 H 0.094 0.906 26 C -0.195 4.195 27 N -0.158 5.158 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.202 0.798 32 H 0.172 0.828 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.301 17.222 11.512 20.842 hybrid contribution 1.241 2.395 0.612 2.765 sum -1.060 19.616 12.124 23.085 Atomic orbital electron populations 1.20093 0.86966 1.03222 1.02523 1.21088 0.97178 0.88188 1.07006 1.22683 0.82963 1.00948 1.10159 1.42845 1.09177 1.07465 1.53054 0.73073 1.22913 0.93867 0.82292 1.10981 1.16615 0.85204 0.81924 0.77767 1.90865 1.23122 1.76336 1.52122 1.47932 1.09186 1.04504 1.68550 1.23303 0.83747 1.01368 0.98467 1.22540 1.01825 0.97910 0.96073 1.20177 0.90873 0.90413 0.91435 0.93410 1.42439 1.55290 1.29904 1.10156 1.20041 1.22119 1.03961 0.99781 0.91768 1.25745 1.02831 1.03393 0.92375 1.70880 1.31162 1.29249 1.27814 0.83253 0.74989 0.75263 0.75484 1.22288 1.22311 1.21109 1.22306 0.99808 0.98601 0.96649 1.21396 0.84882 0.90771 0.98551 0.90633 1.22199 0.94635 0.98584 1.04036 1.69626 0.99514 1.29055 1.17565 0.91123 0.91119 0.90605 0.79775 0.82759 0.92156 0.92797 0.90768 0.80127 0.93440 0.90604 0.91971 0.90769 0.93428 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.01 0.38 -0.17 16 2 C 0.00 -0.02 7.07 -83.00 -0.59 -0.61 16 3 C -0.03 -0.24 11.91 -16.93 -0.20 -0.44 16 4 N -0.52 -5.16 6.15 -10.78 -0.07 -5.23 16 5 H 0.43 3.23 8.96 -40.82 -0.37 2.86 16 6 C 0.16 2.17 7.74 -154.52 -1.20 0.97 16 7 C 0.60 9.11 7.50 -12.53 -0.09 9.02 16 8 O -0.55 -8.70 12.66 5.27 0.07 -8.63 16 9 N -0.57 -8.87 2.97 -166.49 -0.49 -9.36 16 10 C 0.05 0.84 6.32 -3.71 -0.02 0.82 16 11 C -0.14 -2.68 5.66 -26.61 -0.15 -2.83 16 12 C 0.18 3.70 2.73 -67.89 -0.19 3.51 16 13 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 14 N -0.74 -18.72 5.12 -53.38 -0.27 -18.99 16 15 C -0.33 -9.28 9.93 -15.06 -0.15 -9.43 16 16 H 0.06 1.79 7.83 -52.48 -0.41 1.37 16 17 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 18 N -0.95 -29.60 13.70 55.49 0.76 -28.84 16 19 Si 1.08 26.16 29.92 -169.99 -5.09 21.08 16 20 H -0.30 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.30 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.13 -2.35 4.84 -26.61 -0.13 -2.48 16 24 C 0.15 2.25 3.49 -67.60 -0.24 2.01 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.14 -1.98 7.61 37.16 0.28 -1.69 16 27 N -0.43 -5.87 7.52 -7.50 -0.06 -5.93 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.19 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.16 2.40 3.66 -81.60 -0.30 2.10 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.37 9.67 6.63 -40.82 -0.27 9.40 16 37 H 0.25 7.87 6.78 -40.82 -0.28 7.60 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.09 6.64 -51.93 -0.34 0.75 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.00 6.86 -51.93 -0.36 0.64 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -33.86 334.97 -8.68 -42.54 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.19 Total: 11.09 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.39 Total: -2.77 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.13 Total: -68.36 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.09 Total: 21.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.86 -8.68 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044772254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.712 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds