Wall clock time and date at job start Tue Mar 31 2020 04:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35560 * 125.82136 * 2 1 4 4 N 1.35405 * 107.15772 * 179.84237 * 3 2 1 5 5 H 0.97000 * 126.43785 * 180.15898 * 4 3 2 6 6 C 1.36667 * 107.11971 * 0.41550 * 4 3 2 7 7 C 1.47412 * 125.86218 * 179.76075 * 6 4 3 8 8 O 1.21605 * 119.99825 * 353.39946 * 7 6 4 9 9 N 1.34773 * 119.99894 * 173.39710 * 7 6 4 10 10 C 1.46924 * 120.63289 * 3.93649 * 9 7 6 11 11 C 1.52759 * 109.00810 * 233.58514 * 10 9 7 12 12 C 1.53042 * 109.38140 * 305.58535 * 11 10 9 13 13 H 1.09003 * 109.45956 * 301.21860 * 12 11 10 14 14 N 1.46501 * 109.45717 * 181.26171 * 12 11 10 15 15 C 1.36934 * 120.00071 * 84.93330 * 14 12 11 16 16 H 1.08005 * 119.99872 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00308 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99579 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00221 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47173 * 60.00004 * 19 17 15 21 21 H 1.48496 * 109.47093 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47023 * 300.00138 * 19 17 15 23 23 C 1.53035 * 109.53866 * 61.24471 * 12 11 10 24 24 C 1.46931 * 120.62884 * 184.21555 * 9 7 6 25 25 H 1.09001 * 109.58582 * 6.43845 * 24 9 7 26 26 C 1.52994 * 109.58427 * 246.15524 * 24 9 7 27 27 N 1.31607 * 108.27376 * 359.73797 * 6 4 3 28 28 H 1.09002 * 109.47236 * 269.71201 * 1 2 3 29 29 H 1.08998 * 109.47654 * 29.71698 * 1 2 3 30 30 H 1.09005 * 109.47408 * 149.71803 * 1 2 3 31 31 H 1.07997 * 126.42331 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.58614 * 353.41748 * 10 9 7 33 33 H 1.09002 * 109.58724 * 113.84095 * 10 9 7 34 34 H 1.09002 * 109.56363 * 185.55073 * 11 10 9 35 35 H 1.08998 * 109.36334 * 65.49640 * 11 10 9 36 36 H 0.97005 * 120.00255 * 264.92825 * 14 12 11 37 37 H 0.96996 * 119.99705 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.50275 * 178.68590 * 23 12 11 39 39 H 1.08997 * 109.52623 * 58.59496 * 23 12 11 40 40 H 1.09007 * 109.47310 * 60.00476 * 26 24 9 41 41 H 1.09003 * 109.47098 * 180.02562 * 26 24 9 42 42 H 1.08998 * 109.47333 * 300.00094 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5832 0.6659 0.0036 5 1 4.3788 1.2208 0.0066 6 6 3.5464 -0.7003 -0.0038 7 6 4.7174 -1.5957 -0.0082 8 8 5.8359 -1.1334 -0.1263 9 7 4.5483 -2.9268 0.1188 10 6 3.2002 -3.5081 0.1761 11 6 3.0861 -4.3779 1.4266 12 6 4.2166 -5.4096 1.4325 13 1 4.1533 -6.0228 0.5336 14 7 4.0912 -6.2642 2.6158 15 6 3.2681 -7.3581 2.5862 16 1 2.7117 -7.5912 1.6903 17 6 3.1496 -8.1682 3.7072 18 7 3.8281 -7.8845 4.7988 19 14 2.0273 -9.6610 3.6665 20 1 2.4774 -10.5897 2.5987 21 1 2.0772 -10.3537 4.9790 22 1 0.6348 -9.2259 3.3894 23 6 5.5665 -4.6894 1.4646 24 6 5.7088 -3.8235 0.2088 25 1 6.6229 -3.2331 0.2711 26 6 5.7609 -4.7206 -1.0295 27 7 2.2861 -1.0792 -0.0058 28 1 -0.3634 -0.0052 1.0277 29 1 -0.3634 0.8925 -0.5094 30 1 -0.3634 -0.8875 -0.5182 31 1 1.9710 2.1277 -0.0004 32 1 2.4595 -2.7096 0.2193 33 1 3.0286 -4.1209 -0.7089 34 1 2.1248 -4.8917 1.4274 35 1 3.1635 -3.7484 2.3130 36 1 4.5912 -6.0551 3.4203 37 1 3.7456 -8.4507 5.5820 38 1 6.3707 -5.4247 1.4924 39 1 5.6210 -4.0569 2.3506 40 1 5.8494 -4.1021 -1.9227 41 1 6.6221 -5.3853 -0.9606 42 1 4.8483 -5.3137 -1.0872 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044772255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:16 Heat of formation + Delta-G solvation = 43.585574 kcal Electronic energy + Delta-G solvation = -23946.097426 eV Core-core repulsion = 20541.698317 eV Total energy + Delta-G solvation = -3404.399108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.53287 -39.90804 -37.55404 -34.58080 -33.50978 -32.74253 -31.74844 -30.96101 -29.26534 -27.35189 -27.14840 -24.49690 -23.57750 -22.83787 -21.50578 -20.74015 -20.38997 -18.84436 -17.77110 -17.01433 -16.62316 -15.92644 -15.69057 -14.88139 -14.58919 -14.32496 -14.04159 -13.90709 -13.62677 -13.41512 -13.22451 -12.98948 -12.77681 -12.67794 -12.45207 -12.41972 -11.82142 -11.65330 -11.22176 -10.85948 -10.79902 -10.77276 -10.47648 -10.36111 -10.25253 -10.17955 -9.73557 -9.56288 -9.34807 -8.75587 -8.73544 -8.37504 -6.90203 -5.72350 -3.00774 1.21552 2.36116 2.43320 3.30792 3.34659 3.46663 3.51059 3.51983 4.05425 4.60895 4.62539 4.81305 4.97235 5.11732 5.27514 5.41375 5.45824 5.52555 5.53954 5.62186 5.66242 5.73245 5.75928 5.83188 5.87726 6.00318 6.04502 6.16197 6.27468 6.35312 6.49112 6.55884 6.60364 6.65577 6.80382 6.97791 7.07937 7.20508 7.44012 7.66215 7.73335 8.12287 8.46278 9.57154 10.15779 10.50550 11.50417 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018436 B = 0.004131 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.390852 B = 6775.990631 C = 7763.753563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.002 4.002 3 C -0.029 4.029 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.164 3.836 7 C 0.600 3.400 8 O -0.556 6.556 9 N -0.568 5.568 10 C 0.054 3.946 11 C -0.144 4.144 12 C 0.176 3.824 13 H 0.050 0.950 14 N -0.725 5.725 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 C -0.133 4.133 24 C 0.141 3.859 25 H 0.095 0.905 26 C -0.160 4.160 27 N -0.432 5.432 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.185 0.815 32 H 0.154 0.846 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.069 0.931 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 18.570 -11.940 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.135 4.135 3 C -0.167 4.167 4 N -0.126 5.126 5 H 0.269 0.731 6 C -0.098 4.098 7 C 0.385 3.615 8 O -0.434 6.434 9 N -0.298 5.298 10 C -0.069 4.069 11 C -0.186 4.186 12 C 0.066 3.934 13 H 0.068 0.932 14 N -0.365 5.365 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.171 4.171 24 C 0.038 3.962 25 H 0.113 0.887 26 C -0.218 4.218 27 N -0.156 5.156 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.202 0.798 32 H 0.170 0.830 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.157 17.785 -12.025 21.577 hybrid contribution 0.111 0.273 0.443 0.532 sum -2.046 18.058 -11.583 21.551 Atomic orbital electron populations 1.20088 0.86965 1.02982 1.02729 1.21083 0.97174 0.88192 1.07031 1.22680 0.82947 1.00951 1.10142 1.42856 1.09199 1.07472 1.53030 0.73058 1.22742 0.93742 0.82207 1.11088 1.16553 0.85290 0.81976 0.77663 1.90799 1.24130 1.75859 1.52653 1.47950 1.09250 1.04215 1.68406 1.23183 0.83692 1.01382 0.98597 1.22501 1.01892 0.97960 0.96204 1.20265 0.90814 0.90449 0.91858 0.93172 1.42430 1.53679 1.28761 1.11642 1.19199 1.18267 1.01545 0.97768 0.91242 1.24728 1.00559 0.99529 0.96154 1.69655 1.45232 1.40322 1.03063 0.86291 0.80557 0.82937 0.76551 1.21315 1.21778 1.21292 1.22211 1.00106 0.98620 0.96210 1.21305 0.88439 0.90583 0.95844 0.88704 1.22135 1.03186 0.99629 0.96830 1.69660 0.99435 1.29003 1.17484 0.90972 0.91189 0.90722 0.79773 0.82983 0.92180 0.90797 0.92690 0.78385 0.93539 0.90441 0.91905 0.92859 0.91197 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.01 0.38 -0.16 16 2 C 0.00 -0.02 7.07 -83.00 -0.59 -0.61 16 3 C -0.03 -0.24 11.91 -16.93 -0.20 -0.44 16 4 N -0.52 -5.27 6.15 -10.78 -0.07 -5.34 16 5 H 0.43 3.34 8.96 -40.82 -0.37 2.98 16 6 C 0.16 2.24 7.74 -154.53 -1.20 1.04 16 7 C 0.60 9.41 7.69 -12.53 -0.10 9.32 16 8 O -0.56 -9.56 16.52 5.27 0.09 -9.48 16 9 N -0.57 -8.85 2.68 -166.74 -0.45 -9.30 16 10 C 0.05 0.84 5.87 -3.93 -0.02 0.82 16 11 C -0.14 -2.67 5.64 -26.83 -0.15 -2.82 16 12 C 0.18 3.51 2.53 -67.89 -0.17 3.34 16 13 H 0.05 1.01 6.43 -51.93 -0.33 0.68 16 14 N -0.72 -18.26 5.12 -53.38 -0.27 -18.53 16 15 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 19 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 C -0.13 -2.30 5.02 -26.61 -0.13 -2.43 16 24 C 0.14 2.16 3.20 -67.60 -0.22 1.94 16 25 H 0.09 1.47 7.03 -51.93 -0.36 1.10 16 26 C -0.16 -2.16 9.03 37.15 0.34 -1.83 16 27 N -0.43 -5.85 7.51 -7.50 -0.06 -5.91 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.19 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 2.35 3.68 -81.32 -0.30 2.05 16 33 H 0.06 0.90 7.52 -51.93 -0.39 0.51 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 37 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.96 5.74 -51.93 -0.30 0.66 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -33.14 338.08 -8.42 -41.56 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.14 Total: 11.19 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.31 Total: 0.96 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -0.12 Total: -66.75 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.14 -8.42 -41.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044772255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.145 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds