Wall clock time and date at job start Tue Mar 31 2020 04:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33318 * 126.10893 * 2 1 4 4 C 1.30864 * 109.68642 * 180.02562 * 3 2 1 5 5 N 1.34497 * 109.16138 * 359.76218 * 4 3 2 6 6 H 0.96995 * 126.46862 * 180.25716 * 5 4 3 7 7 C 1.36666 * 126.10650 * 180.02562 * 2 1 3 8 8 C 1.46764 * 126.84488 * 359.95926 * 7 2 1 9 9 O 1.21683 * 119.99933 * 29.36289 * 8 7 2 10 10 N 1.34778 * 119.99884 * 209.35933 * 8 7 2 11 11 C 1.46926 * 120.63238 * 5.73309 * 10 8 7 12 12 C 1.53191 * 108.77167 * 126.41645 * 11 10 8 13 13 C 1.53106 * 109.33432 * 54.63469 * 12 11 10 14 14 H 1.08999 * 109.44934 * 58.65046 * 13 12 11 15 15 N 1.46504 * 109.50192 * 178.63141 * 13 12 11 16 16 C 1.36936 * 119.99828 * 275.05247 * 15 13 12 17 17 H 1.08002 * 120.00055 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00215 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99741 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00279 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47248 * 59.99861 * 20 18 16 22 22 H 1.48500 * 109.47167 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47224 * 300.00059 * 20 18 16 24 24 C 1.53041 * 109.50330 * 298.65485 * 13 12 11 25 25 C 1.46926 * 120.62822 * 185.75601 * 10 8 7 26 26 H 1.09000 * 109.58759 * 113.79584 * 25 10 8 27 27 C 1.53005 * 109.70662 * 353.44712 * 25 10 8 28 28 H 1.09003 * 109.47116 * 270.00018 * 1 2 3 29 29 H 1.08996 * 109.47161 * 30.00092 * 1 2 3 30 30 H 1.09008 * 109.47397 * 150.00035 * 1 2 3 31 31 H 1.07998 * 125.41661 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.58411 * 246.20037 * 11 10 8 33 33 H 1.08998 * 109.58412 * 6.62454 * 11 10 8 34 34 H 1.09001 * 109.49396 * 174.58819 * 12 11 10 35 35 H 1.09003 * 109.49818 * 294.67664 * 12 11 10 36 36 H 0.96997 * 119.99967 * 95.05268 * 15 13 12 37 37 H 0.96999 * 119.99959 * 180.02562 * 19 18 16 38 38 H 1.08994 * 109.49644 * 301.38319 * 24 13 12 39 39 H 1.08991 * 109.49519 * 181.31342 * 24 13 12 40 40 H 1.09005 * 109.46330 * 303.71272 * 27 25 10 41 41 H 1.08996 * 109.47245 * 63.70653 * 27 25 10 42 42 H 1.08996 * 109.47056 * 183.71333 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7071 -0.0006 5 7 3.6121 -0.6363 0.0043 6 1 4.4188 -1.1749 0.0086 7 6 2.3123 -1.1042 -0.0005 8 6 1.8820 -2.5073 -0.0003 9 8 0.8253 -2.8197 -0.5164 10 7 2.6574 -3.4498 0.5715 11 6 3.8725 -3.0744 1.3071 12 6 3.8123 -3.6933 2.7072 13 6 3.5929 -5.2036 2.5848 14 1 4.4050 -5.6425 2.0051 15 7 3.5673 -5.8039 3.9209 16 6 4.7391 -6.1558 4.5359 17 1 5.6821 -5.9904 4.0362 18 6 4.7149 -6.7252 5.8017 19 7 3.5656 -6.9263 6.4109 20 14 6.3133 -7.2059 6.6404 21 1 7.1676 -6.0023 6.8047 22 1 6.0169 -7.7889 7.9736 23 1 7.0261 -8.2091 5.8094 24 6 2.2610 -5.4710 1.8801 25 6 2.3037 -4.8723 0.4706 26 1 3.0528 -5.3937 -0.1253 27 6 0.9313 -5.0172 -0.1899 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.3970 1.3744 -0.0003 32 1 4.7495 -3.4492 0.7794 33 1 3.9292 -1.9890 1.3894 34 1 4.7498 -3.5031 3.2296 35 1 2.9877 -3.2501 3.2657 36 1 2.7204 -5.9522 4.3698 37 1 3.5487 -7.3238 7.2956 38 1 1.4511 -5.0111 2.4462 39 1 2.0940 -6.5460 1.8138 40 1 0.1943 -4.4458 0.3746 41 1 0.9781 -4.6403 -1.2116 42 1 0.6436 -6.0684 -0.2032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044883102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:34 Heat of formation + Delta-G solvation = 32.811693 kcal Electronic energy + Delta-G solvation = -24108.274659 eV Core-core repulsion = 20703.408360 eV Total energy + Delta-G solvation = -3404.866299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33345 -41.23716 -38.74855 -36.28702 -34.73664 -33.74779 -33.68892 -31.87636 -31.04027 -28.74073 -27.87288 -26.05919 -24.76233 -24.13857 -23.12151 -21.81979 -21.30017 -20.42186 -19.21677 -18.58645 -17.44716 -17.13533 -16.82920 -16.71762 -15.86074 -15.59844 -15.46895 -15.34902 -15.11564 -14.67110 -14.62946 -13.97391 -13.88163 -13.83720 -13.48456 -13.38514 -13.14211 -13.00923 -12.85448 -12.70973 -12.63441 -12.23358 -12.07869 -12.01011 -11.72890 -11.41903 -11.23520 -11.00921 -10.83337 -10.27573 -9.75157 -9.44306 -9.02676 -7.93592 -5.22955 0.32675 1.48147 1.50548 1.56677 1.71588 1.76501 2.02572 2.32134 2.56553 3.39202 3.41803 3.62837 3.71481 3.77428 3.94452 4.01361 4.10501 4.20176 4.27244 4.30495 4.47377 4.56640 4.64355 4.68136 4.73514 4.78893 4.82969 4.94748 4.96132 5.01470 5.05729 5.14060 5.25258 5.39856 5.46383 5.52177 5.55480 5.64940 6.26816 6.28735 6.36012 6.92147 7.04863 7.33567 8.08921 8.31812 9.29887 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.003925 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.078699 B = 7132.492651 C = 7828.375607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 N -0.534 5.534 4 C 0.234 3.766 5 N -0.544 5.544 6 H 0.439 0.561 7 C -0.104 4.104 8 C 0.592 3.408 9 O -0.544 6.544 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.139 4.139 13 C 0.174 3.826 14 H 0.055 0.945 15 N -0.738 5.738 16 C -0.238 4.238 17 H 0.081 0.919 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.301 1.301 23 H -0.277 1.277 24 C -0.125 4.125 25 C 0.154 3.846 26 H 0.094 0.906 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.262 0.738 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 12.713 -16.380 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 N -0.255 5.255 4 C -0.050 4.050 5 N -0.153 5.153 6 H 0.284 0.716 7 C -0.220 4.220 8 C 0.381 3.619 9 O -0.422 6.422 10 N -0.333 5.333 11 C -0.020 4.020 12 C -0.180 4.180 13 C 0.066 3.934 14 H 0.073 0.927 15 N -0.377 5.377 16 C -0.369 4.369 17 H 0.099 0.901 18 C -0.269 4.269 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.202 1.202 22 H -0.227 1.227 23 H -0.203 1.203 24 C -0.164 4.164 25 C 0.051 3.949 26 H 0.111 0.889 27 C -0.183 4.183 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.278 0.722 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.492 13.254 -16.626 21.315 hybrid contribution 0.960 -1.494 1.349 2.230 sum 2.452 11.760 -15.276 19.434 Atomic orbital electron populations 1.20259 0.86813 1.03768 1.02832 1.21237 0.97369 0.87339 1.00461 1.70117 1.02022 1.30711 1.22636 1.26093 0.97601 0.82495 0.98825 1.43775 1.07524 1.09073 1.54956 0.71601 1.20798 0.85783 0.94466 1.20933 1.17147 0.83606 0.83002 0.78150 1.90853 1.23455 1.80179 1.47729 1.48167 1.25830 1.06588 1.52702 1.22171 0.86948 1.00881 0.91995 1.22440 1.01579 0.98095 0.95861 1.20420 0.95817 0.91462 0.85717 0.92741 1.42660 1.05519 1.73356 1.16180 1.19611 0.87521 1.31685 0.98128 0.90067 1.25558 0.99657 1.03008 0.98647 1.69824 1.25712 1.51478 1.15298 0.85246 0.79368 0.78163 0.77187 1.20231 1.22733 1.20287 1.22170 0.97681 1.01084 0.95480 1.21309 0.98695 0.79381 0.95494 0.88855 1.22070 0.94765 1.00328 1.01114 0.91023 0.90052 0.90308 0.72199 0.88106 0.88717 0.91202 0.94381 0.79946 0.94189 0.93488 0.90852 0.92955 0.91563 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.18 71.23 0.73 -1.16 16 2 C 0.07 1.79 7.14 41.96 0.30 2.09 16 3 N -0.53 -12.37 11.20 -187.59 -2.10 -14.48 16 4 C 0.23 3.36 13.01 180.33 2.35 5.70 16 5 N -0.54 -8.21 4.77 -188.04 -0.90 -9.11 16 6 H 0.44 3.91 6.95 -92.71 -0.64 3.27 16 7 C -0.10 -2.46 6.24 40.01 0.25 -2.21 16 8 C 0.59 16.02 7.47 86.47 0.65 16.66 16 9 O -0.54 -17.07 10.64 -4.29 -0.05 -17.11 16 10 N -0.60 -14.80 2.97 -799.60 -2.38 -17.17 16 11 C 0.10 2.16 5.43 86.36 0.47 2.63 16 12 C -0.14 -4.27 5.66 30.69 0.17 -4.10 16 13 C 0.17 6.24 2.74 45.04 0.12 6.36 16 14 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 15 N -0.74 -35.64 5.12 -322.70 -1.65 -37.29 16 16 C -0.24 -12.54 9.93 84.03 0.83 -11.70 16 17 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 19 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 20 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 24 C -0.13 -3.97 4.84 30.67 0.15 -3.82 16 25 C 0.15 3.98 3.49 44.98 0.16 4.14 16 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 27 C -0.13 -3.33 7.60 71.98 0.55 -2.78 16 28 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.04 6.42 -2.38 -0.02 2.02 16 31 H 0.26 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.66 4.45 -2.39 -0.01 1.65 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.37 19.78 7.80 -92.71 -0.72 19.06 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.05 1.61 6.76 -2.38 -0.02 1.59 16 41 H 0.07 1.80 6.75 -2.39 -0.02 1.78 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.65 332.52 2.10 -69.55 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.32 Total: 29.52 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 7.18 Total: 8.00 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -6.75 Total: -136.63 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.05 Total: -17.11 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -71.65 2.10 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.361 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds