Wall clock time and date at job start Tue Mar 31 2020 03:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35841 * 126.13798 * 2 1 4 4 N 1.30174 * 109.00430 * 179.97438 * 3 2 1 5 5 C 1.35757 * 108.86363 * 0.02562 * 4 3 2 6 6 C 1.47325 * 126.23075 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00057 * 0.02562 * 6 5 4 9 9 C 1.46507 * 119.99842 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.45915 * 60.02754 * 9 8 6 11 11 C 1.53042 * 109.45681 * 300.06642 * 9 8 6 12 12 C 1.53184 * 109.31499 * 301.34728 * 11 9 8 13 13 N 1.46928 * 108.77462 * 305.36287 * 12 11 9 14 14 C 1.36939 * 120.63308 * 233.63082 * 13 12 11 15 15 H 1.08006 * 119.99827 * 152.60964 * 14 13 12 16 16 C 1.38809 * 120.00014 * 332.60877 * 14 13 12 17 17 N 1.31619 * 119.99612 * 159.36732 * 16 14 13 18 18 Si 1.86794 * 120.00229 * 339.37266 * 16 14 13 19 19 H 1.48499 * 109.47505 * 92.92425 * 18 16 14 20 20 H 1.48501 * 109.47417 * 212.92805 * 18 16 14 21 21 H 1.48505 * 109.46926 * 332.92779 * 18 16 14 22 22 C 1.46927 * 118.73678 * 53.61354 * 13 12 11 23 23 C 1.53039 * 109.45701 * 179.97438 * 9 8 6 24 24 C 1.35380 * 126.13151 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47412 * 89.97071 * 1 2 3 26 26 H 1.08995 * 109.47043 * 209.97481 * 1 2 3 27 27 H 1.09002 * 109.46856 * 329.96790 * 1 2 3 28 28 H 1.08001 * 125.49774 * 0.04434 * 3 2 1 29 29 H 0.96994 * 120.00299 * 0.02562 * 8 6 5 30 30 H 1.08997 * 109.47096 * 60.00171 * 10 9 8 31 31 H 1.09001 * 109.46960 * 179.97438 * 10 9 8 32 32 H 1.09002 * 109.47437 * 299.99986 * 10 9 8 33 33 H 1.08997 * 109.49581 * 61.30079 * 11 9 8 34 34 H 1.08999 * 109.49140 * 181.39026 * 11 9 8 35 35 H 1.09000 * 109.58538 * 185.58495 * 12 11 9 36 36 H 1.08996 * 109.59254 * 65.15146 * 12 11 9 37 37 H 0.97004 * 119.99788 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.58928 * 186.60548 * 22 13 12 39 39 H 1.08997 * 109.70719 * 66.24394 * 22 13 12 40 40 H 1.09001 * 109.49568 * 178.60333 * 23 9 8 41 41 H 1.08998 * 109.49814 * 298.67135 * 23 9 8 42 42 H 1.07994 * 126.56388 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5101 0.7136 0.0006 5 6 3.5511 -0.6434 0.0003 6 6 4.7652 -1.4779 0.0003 7 8 4.6698 -2.6903 -0.0004 8 7 5.9817 -0.8977 0.0009 9 6 7.1891 -1.7276 0.0003 10 6 7.2010 -2.6090 -1.2502 11 6 7.1995 -2.6133 1.2483 12 6 7.1527 -1.7285 2.4979 13 7 8.2575 -0.7620 2.4347 14 6 9.1436 -0.6463 3.4723 15 1 10.1517 -0.3062 3.2861 16 6 8.7463 -0.9662 4.7633 17 7 9.6488 -1.2516 5.6778 18 14 6.9310 -0.9918 5.2025 19 1 6.3994 -2.3677 5.0307 20 1 6.7573 -0.5669 6.6148 21 1 6.1929 -0.0611 4.3112 22 6 8.3936 0.0779 1.2369 23 6 8.4265 -0.8272 0.0006 24 6 2.2633 -1.0934 -0.0005 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.9259 2.1221 0.0007 29 1 6.0579 0.0693 0.0018 30 1 7.1929 -1.9785 -2.1392 31 1 8.0994 -3.2262 -1.2510 32 1 6.3194 -3.2501 -1.2513 33 1 6.3302 -3.2706 1.2352 34 1 8.1095 -3.2131 1.2610 35 1 7.2597 -2.3479 3.3884 36 1 6.2025 -1.1955 2.5330 37 1 9.3712 -1.4756 6.5799 38 1 9.3194 0.6503 1.2952 39 1 7.5461 0.7598 1.1678 40 1 9.3251 -1.4437 0.0252 41 1 8.4305 -0.2140 -0.9005 42 1 1.9420 -2.1245 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045406424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:14 Heat of formation + Delta-G solvation = 56.435873 kcal Electronic energy + Delta-G solvation = -24475.164056 eV Core-core repulsion = 21071.322178 eV Total energy + Delta-G solvation = -3403.841877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27116 -39.88038 -37.34199 -34.46173 -34.33896 -31.88176 -31.00512 -30.31805 -29.77008 -27.61406 -27.42134 -23.96197 -23.37883 -22.69140 -21.46196 -20.99896 -20.03753 -18.64235 -18.02225 -16.76655 -16.13367 -16.07965 -15.16279 -15.07002 -14.60216 -14.39092 -14.01692 -13.87643 -13.61839 -13.52461 -13.46299 -13.14970 -13.02600 -13.00119 -12.25105 -11.95986 -11.83848 -11.61195 -11.26186 -11.13428 -10.70707 -10.45802 -10.36813 -10.14254 -9.94667 -9.90173 -9.63714 -9.39843 -9.20300 -8.80138 -8.61866 -8.40360 -6.85218 -5.86694 -3.20908 1.56703 2.38556 2.42391 3.42456 3.55513 3.58122 3.62123 3.77178 4.30734 4.36235 4.59247 4.62808 4.66371 4.92900 5.04066 5.11282 5.24808 5.34831 5.41486 5.48214 5.57171 5.84343 5.91067 6.00724 6.12400 6.17536 6.24939 6.28324 6.35016 6.43610 6.63582 6.66086 6.70806 6.78927 6.83159 6.84256 6.99323 7.13845 7.63461 8.03645 8.06999 8.41261 8.62478 9.04276 9.82150 10.21462 11.29504 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.005470 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.300854 B = 5117.439763 C = 6027.358264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.464 5.464 3 C 0.182 3.818 4 N -0.461 5.461 5 C -0.057 4.057 6 C 0.603 3.397 7 O -0.546 6.546 8 N -0.698 5.698 9 C 0.183 3.817 10 C -0.159 4.159 11 C -0.144 4.144 12 C 0.133 3.867 13 N -0.605 5.605 14 C -0.256 4.256 15 H 0.085 0.915 16 C 0.024 3.976 17 N -0.911 5.911 18 Si 0.881 3.119 19 H -0.290 1.290 20 H -0.305 1.305 21 H -0.271 1.271 22 C 0.148 3.852 23 C -0.137 4.137 24 C 0.027 3.973 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.211 0.789 29 H 0.406 0.594 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.178 3.065 -15.336 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.146 5.146 3 C -0.102 4.102 4 N -0.179 5.179 5 C -0.186 4.186 6 C 0.389 3.611 7 O -0.425 6.425 8 N -0.348 5.348 9 C 0.097 3.903 10 C -0.218 4.218 11 C -0.183 4.183 12 C 0.007 3.993 13 N -0.329 5.329 14 C -0.384 4.384 15 H 0.103 0.897 16 C -0.175 4.175 17 N -0.554 5.554 18 Si 0.712 3.288 19 H -0.217 1.217 20 H -0.234 1.234 21 H -0.196 1.196 22 C 0.022 3.978 23 C -0.177 4.177 24 C -0.111 4.111 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.227 0.773 29 H 0.242 0.758 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.586 2.703 -15.153 23.370 hybrid contribution -1.850 0.034 0.468 1.909 sum -19.436 2.737 -14.685 24.513 Atomic orbital electron populations 1.22118 0.76005 1.05115 1.03860 1.45336 1.08129 1.06984 1.54181 1.25191 0.85242 0.93533 1.06234 1.70630 1.19425 1.10580 1.17301 1.20765 0.93486 0.90490 1.13842 1.16834 0.81954 0.86340 0.75971 1.90710 1.86812 1.13276 1.51678 1.45941 1.04783 1.10803 1.73293 1.20292 0.83627 0.90931 0.95423 1.22212 1.03077 1.00078 0.96384 1.22408 1.02585 0.98473 0.94878 1.21230 0.90530 0.91153 0.96367 1.44353 1.31974 1.39528 1.17019 1.18934 0.92346 1.42187 0.84982 0.89696 1.25237 0.96920 0.99663 0.95638 1.69840 1.32796 1.48887 1.03885 0.86968 0.87785 0.77690 0.76332 1.21748 1.23361 1.19632 1.20902 0.99356 0.91732 0.85850 1.22327 0.96882 0.99124 0.99353 1.22584 0.90284 0.93116 1.05141 0.90204 0.89336 0.89086 0.77296 0.75806 0.93277 0.92039 0.90710 0.90579 0.91160 0.91354 0.95954 0.92900 0.91709 0.96093 0.90254 0.92123 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.15 59.85 0.67 0.94 16 2 N -0.46 -4.16 3.13 -125.78 -0.39 -4.56 16 3 C 0.18 1.86 12.55 -89.91 -1.13 0.73 16 4 N -0.46 -6.67 11.01 -11.03 -0.12 -6.79 16 5 C -0.06 -0.87 6.98 -83.09 -0.58 -1.45 16 6 C 0.60 10.65 7.23 -12.56 -0.09 10.56 16 7 O -0.55 -10.51 13.09 5.26 0.07 -10.44 16 8 N -0.70 -12.01 4.09 -48.66 -0.20 -12.21 16 9 C 0.18 3.18 0.66 -131.77 -0.09 3.09 16 10 C -0.16 -2.45 8.40 37.16 0.31 -2.13 16 11 C -0.14 -2.93 4.67 -26.61 -0.12 -3.06 16 12 C 0.13 3.18 3.94 -3.71 -0.01 3.17 16 13 N -0.60 -14.98 2.77 -172.29 -0.48 -15.46 16 14 C -0.26 -7.40 10.03 -15.06 -0.15 -7.55 16 15 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 16 C 0.02 0.72 5.23 -17.43 -0.09 0.63 16 17 N -0.91 -28.80 13.97 55.49 0.78 -28.02 16 18 Si 0.88 23.88 24.35 -169.99 -4.14 19.74 16 19 H -0.29 -7.73 6.62 56.52 0.37 -7.36 16 20 H -0.31 -8.30 7.11 56.52 0.40 -7.90 16 21 H -0.27 -7.36 6.64 56.52 0.38 -6.98 16 22 C 0.15 2.98 6.24 -3.68 -0.02 2.95 16 23 C -0.14 -2.31 4.96 -26.58 -0.13 -2.44 16 24 C 0.03 0.33 11.26 -16.64 -0.19 0.14 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.21 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.41 6.78 6.98 -40.82 -0.28 6.49 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 33 H 0.08 1.59 6.20 -51.93 -0.32 1.26 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.07 1.81 4.49 -51.93 -0.23 1.57 16 36 H 0.02 0.56 6.67 -51.93 -0.35 0.21 16 37 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 38 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.02 0.42 6.94 -51.93 -0.36 0.05 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -36.34 329.07 -7.28 -43.62 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.12 Total: 3.59 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -1.63 Total: 5.57 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.42 Total: -67.04 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -4.14 Total: 19.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.34 -7.28 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045406424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.054 kcal (2) G-P(sol) polarization free energy of solvation -36.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds