Wall clock time and date at job start Tue Mar 31 2020 03:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35841 * 126.13798 * 2 1 4 4 N 1.30174 * 109.00430 * 179.97438 * 3 2 1 5 5 C 1.35757 * 108.86363 * 0.02562 * 4 3 2 6 6 C 1.47325 * 126.23075 * 179.97438 * 5 4 3 7 7 O 1.21622 * 120.00116 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00057 * 0.02562 * 6 5 4 9 9 C 1.46507 * 119.99842 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.45915 * 60.02754 * 9 8 6 11 11 C 1.53042 * 109.45681 * 300.06642 * 9 8 6 12 12 C 1.53184 * 109.31499 * 301.34728 * 11 9 8 13 13 N 1.46928 * 108.77462 * 305.36287 * 12 11 9 14 14 C 1.36939 * 120.63308 * 233.63082 * 13 12 11 15 15 H 1.08006 * 119.99827 * 152.60964 * 14 13 12 16 16 C 1.38809 * 120.00014 * 332.60877 * 14 13 12 17 17 N 1.31619 * 119.99612 * 159.36732 * 16 14 13 18 18 Si 1.86794 * 120.00229 * 339.37266 * 16 14 13 19 19 H 1.48499 * 109.47505 * 92.92425 * 18 16 14 20 20 H 1.48501 * 109.47417 * 212.92805 * 18 16 14 21 21 H 1.48505 * 109.46926 * 332.92779 * 18 16 14 22 22 C 1.46927 * 118.73678 * 53.61354 * 13 12 11 23 23 C 1.53039 * 109.45701 * 179.97438 * 9 8 6 24 24 C 1.35380 * 126.13151 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47412 * 89.97071 * 1 2 3 26 26 H 1.08995 * 109.47043 * 209.97481 * 1 2 3 27 27 H 1.09002 * 109.46856 * 329.96790 * 1 2 3 28 28 H 1.08001 * 125.49774 * 0.04434 * 3 2 1 29 29 H 0.96994 * 120.00299 * 0.02562 * 8 6 5 30 30 H 1.08997 * 109.47096 * 60.00171 * 10 9 8 31 31 H 1.09001 * 109.46960 * 179.97438 * 10 9 8 32 32 H 1.09002 * 109.47437 * 299.99986 * 10 9 8 33 33 H 1.08997 * 109.49581 * 61.30079 * 11 9 8 34 34 H 1.08999 * 109.49140 * 181.39026 * 11 9 8 35 35 H 1.09000 * 109.58538 * 185.58495 * 12 11 9 36 36 H 1.08996 * 109.59254 * 65.15146 * 12 11 9 37 37 H 0.97004 * 119.99788 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.58928 * 186.60548 * 22 13 12 39 39 H 1.08997 * 109.70719 * 66.24394 * 22 13 12 40 40 H 1.09001 * 109.49568 * 178.60333 * 23 9 8 41 41 H 1.08998 * 109.49814 * 298.67135 * 23 9 8 42 42 H 1.07994 * 126.56388 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5101 0.7136 0.0006 5 6 3.5511 -0.6434 0.0003 6 6 4.7652 -1.4779 0.0003 7 8 4.6698 -2.6903 -0.0004 8 7 5.9817 -0.8977 0.0009 9 6 7.1891 -1.7276 0.0003 10 6 7.2010 -2.6090 -1.2502 11 6 7.1995 -2.6133 1.2483 12 6 7.1527 -1.7285 2.4979 13 7 8.2575 -0.7620 2.4347 14 6 9.1436 -0.6463 3.4723 15 1 10.1517 -0.3062 3.2861 16 6 8.7463 -0.9662 4.7633 17 7 9.6488 -1.2516 5.6778 18 14 6.9310 -0.9918 5.2025 19 1 6.3994 -2.3677 5.0307 20 1 6.7573 -0.5669 6.6148 21 1 6.1929 -0.0611 4.3112 22 6 8.3936 0.0779 1.2369 23 6 8.4265 -0.8272 0.0006 24 6 2.2633 -1.0934 -0.0005 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5143 28 1 1.9259 2.1221 0.0007 29 1 6.0579 0.0693 0.0018 30 1 7.1929 -1.9785 -2.1392 31 1 8.0994 -3.2262 -1.2510 32 1 6.3194 -3.2501 -1.2513 33 1 6.3302 -3.2706 1.2352 34 1 8.1095 -3.2131 1.2610 35 1 7.2597 -2.3479 3.3884 36 1 6.2025 -1.1955 2.5330 37 1 9.3712 -1.4756 6.5799 38 1 9.3194 0.6503 1.2952 39 1 7.5461 0.7598 1.1678 40 1 9.3251 -1.4437 0.0252 41 1 8.4305 -0.2140 -0.9005 42 1 1.9420 -2.1245 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045406424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:14 Heat of formation + Delta-G solvation = 31.157420 kcal Electronic energy + Delta-G solvation = -24476.260212 eV Core-core repulsion = 21071.322178 eV Total energy + Delta-G solvation = -3404.938033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.10944 -41.27910 -38.88550 -36.20309 -35.09899 -33.80577 -32.55273 -32.01171 -30.68952 -29.28995 -27.99538 -25.76231 -24.56603 -24.42861 -22.79522 -22.10889 -21.25293 -20.15657 -19.06256 -18.67951 -17.31485 -17.06410 -16.84121 -16.46053 -15.92850 -15.80250 -15.35143 -15.22185 -15.06880 -14.91276 -14.65650 -14.53155 -14.26120 -13.74293 -13.66718 -13.51339 -13.44601 -13.10892 -12.88299 -12.66931 -12.59377 -12.19530 -12.05422 -11.66134 -11.53986 -11.34947 -11.25529 -10.77011 -10.70367 -10.63415 -10.00438 -9.58400 -8.92814 -8.19822 -5.48896 0.60335 1.23682 1.32052 1.42305 1.48278 1.76828 2.37099 2.38160 2.60459 3.02909 3.33252 3.45886 3.76401 3.88911 3.94032 4.00112 4.07339 4.23185 4.32558 4.45324 4.45949 4.50403 4.63262 4.67507 4.74911 4.82112 4.84565 4.91206 4.99265 5.06040 5.10396 5.13820 5.19033 5.34800 5.41536 5.44144 5.71633 5.85821 6.11434 6.13373 6.60971 6.89798 6.91129 7.34666 7.60739 8.03736 9.00277 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.005470 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.300854 B = 5117.439763 C = 6027.358264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.455 5.455 3 C 0.192 3.808 4 N -0.502 5.502 5 C -0.102 4.102 6 C 0.597 3.403 7 O -0.573 6.573 8 N -0.698 5.698 9 C 0.183 3.817 10 C -0.149 4.149 11 C -0.135 4.135 12 C 0.137 3.863 13 N -0.616 5.616 14 C -0.241 4.241 15 H 0.063 0.937 16 C -0.028 4.028 17 N -0.953 5.953 18 Si 0.938 3.062 19 H -0.289 1.289 20 H -0.306 1.306 21 H -0.272 1.272 22 C 0.142 3.858 23 C -0.125 4.125 24 C 0.036 3.964 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.251 0.749 29 H 0.408 0.592 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.014 0.986 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.656 4.116 -17.427 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.135 5.135 3 C -0.092 4.092 4 N -0.221 5.221 5 C -0.230 4.230 6 C 0.385 3.615 7 O -0.453 6.453 8 N -0.349 5.349 9 C 0.098 3.902 10 C -0.207 4.207 11 C -0.175 4.175 12 C 0.012 3.988 13 N -0.340 5.340 14 C -0.371 4.371 15 H 0.081 0.919 16 C -0.223 4.223 17 N -0.600 5.600 18 Si 0.769 3.231 19 H -0.216 1.216 20 H -0.234 1.234 21 H -0.197 1.197 22 C 0.017 3.983 23 C -0.164 4.164 24 C -0.106 4.106 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.267 0.733 29 H 0.244 0.756 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -20.111 3.778 -17.289 26.788 hybrid contribution -1.158 -0.231 1.051 1.580 sum -21.268 3.547 -16.238 26.993 Atomic orbital electron populations 1.22528 0.72674 1.06865 1.05633 1.45625 1.09953 1.05671 1.52293 1.25986 0.84365 0.95248 1.03647 1.70536 1.22041 1.10213 1.19347 1.20637 0.93661 0.91213 1.17500 1.17239 0.82721 0.86398 0.75175 1.90677 1.87296 1.14367 1.52989 1.45922 1.04722 1.10778 1.73429 1.20271 0.84222 0.90980 0.94751 1.22097 1.02940 0.99821 0.95829 1.22287 1.02109 0.98252 0.94873 1.21089 0.89711 0.91005 0.96970 1.44479 1.31387 1.40738 1.17434 1.18961 0.92182 1.39938 0.86026 0.91904 1.25740 0.99896 1.00727 0.95916 1.69937 1.34380 1.51356 1.04310 0.86040 0.83854 0.77505 0.75701 1.21629 1.23443 1.19719 1.21127 0.99797 0.92088 0.85265 1.22215 0.96452 0.98740 0.98972 1.22787 0.89801 0.94458 1.03507 0.88370 0.88390 0.86665 0.73278 0.75565 0.91318 0.90865 0.92203 0.91195 0.91444 0.94274 0.96817 0.92983 0.91551 0.95083 0.90315 0.88350 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.23 11.15 127.77 1.42 1.65 16 2 N -0.45 -6.78 3.13 -551.86 -1.73 -8.51 16 3 C 0.19 3.36 12.55 180.10 2.26 5.62 16 4 N -0.50 -13.78 11.01 -188.82 -2.08 -15.85 16 5 C -0.10 -3.06 6.98 40.50 0.28 -2.78 16 6 C 0.60 20.83 7.23 86.63 0.63 21.46 16 7 O -0.57 -22.04 13.09 -4.10 -0.05 -22.09 16 8 N -0.70 -23.30 4.09 -426.10 -1.74 -25.04 16 9 C 0.18 6.11 0.66 3.63 0.00 6.11 16 10 C -0.15 -4.26 8.40 71.98 0.60 -3.65 16 11 C -0.14 -5.50 4.67 30.67 0.14 -5.36 16 12 C 0.14 6.63 3.94 86.36 0.34 6.97 16 13 N -0.62 -30.48 2.77 -699.00 -1.94 -32.41 16 14 C -0.24 -14.16 10.03 84.03 0.84 -13.31 16 15 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 16 C -0.03 -1.71 5.23 84.86 0.44 -1.26 16 17 N -0.95 -61.80 13.97 21.65 0.30 -61.49 16 18 Si 0.94 50.67 24.35 68.60 1.67 52.34 16 19 H -0.29 -15.36 6.62 99.48 0.66 -14.70 16 20 H -0.31 -16.37 7.11 99.48 0.71 -15.67 16 21 H -0.27 -14.54 6.64 99.48 0.66 -13.88 16 22 C 0.14 5.53 6.24 86.38 0.54 6.07 16 23 C -0.12 -3.90 4.96 30.69 0.15 -3.74 16 24 C 0.04 0.80 11.26 83.72 0.94 1.74 16 25 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.25 1.88 8.06 -2.91 -0.02 1.86 16 29 H 0.41 13.12 6.98 -92.71 -0.65 12.47 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.93 6.17 -2.39 -0.01 1.91 16 33 H 0.07 2.94 6.20 -2.39 -0.01 2.92 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.04 2.10 4.49 -2.39 -0.01 2.09 16 36 H 0.01 0.70 6.67 -2.39 -0.02 0.68 16 37 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 38 H 0.07 2.55 7.93 -2.38 -0.02 2.53 16 39 H 0.03 1.17 6.94 -2.39 -0.02 1.16 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.20 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -81.20 329.07 3.33 -77.87 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.29 Total: 15.68 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: 8.61 Total: 19.51 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.18 Total: -143.31 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.09 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.67 Total: 52.34 kcal Total: -81.20 3.33 -77.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045406424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.029 kcal (2) G-P(sol) polarization free energy of solvation -81.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds