Wall clock time and date at job start Tue Mar 31 2020 03:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34498 * 126.47565 * 2 1 4 4 N 1.30857 * 109.16595 * 180.02562 * 3 2 1 5 5 C 1.33315 * 109.68362 * 359.74774 * 4 3 2 6 6 C 1.36664 * 107.78841 * 0.40582 * 5 4 3 7 7 C 1.46763 * 126.84367 * 179.87096 * 6 5 4 8 8 O 1.21684 * 119.99999 * 174.66634 * 7 6 5 9 9 N 1.34773 * 120.00338 * 354.93915 * 7 6 5 10 10 C 1.46501 * 120.00109 * 184.93004 * 9 7 6 11 11 C 1.52995 * 109.46019 * 60.02677 * 10 9 7 12 12 C 1.53038 * 109.46134 * 300.06551 * 10 9 7 13 13 C 1.53193 * 109.31650 * 301.34884 * 12 10 9 14 14 N 1.46925 * 108.77499 * 305.36335 * 13 12 10 15 15 C 1.36936 * 120.63309 * 233.63122 * 14 13 12 16 16 H 1.08008 * 119.99756 * 31.55886 * 15 14 13 17 17 C 1.38809 * 120.00314 * 211.56331 * 15 14 13 18 18 N 1.31617 * 119.99921 * 10.13147 * 17 15 14 19 19 Si 1.86797 * 120.00302 * 190.12872 * 17 15 14 20 20 H 1.48502 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46838 * 119.99632 * 19 17 15 22 22 H 1.48493 * 109.47291 * 240.00073 * 19 17 15 23 23 C 1.46927 * 118.73762 * 53.60388 * 14 13 12 24 24 C 1.53048 * 109.45853 * 180.02562 * 10 9 7 25 25 H 1.08998 * 109.46890 * 274.38285 * 1 2 3 26 26 H 1.08999 * 109.46948 * 34.38782 * 1 2 3 27 27 H 1.09002 * 109.46969 * 154.38563 * 1 2 3 28 28 H 1.07999 * 125.41374 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.10462 * 180.28523 * 5 4 3 30 30 H 0.97007 * 119.99919 * 4.93306 * 9 7 6 31 31 H 1.09006 * 109.46948 * 60.00285 * 11 10 9 32 32 H 1.09007 * 109.46684 * 179.97438 * 11 10 9 33 33 H 1.08990 * 109.47326 * 300.00127 * 11 10 9 34 34 H 1.09006 * 109.49608 * 61.29742 * 12 10 9 35 35 H 1.08997 * 109.49981 * 181.39291 * 12 10 9 36 36 H 1.08994 * 109.58870 * 185.57599 * 13 12 10 37 37 H 1.09008 * 109.70651 * 65.21487 * 13 12 10 38 38 H 0.97001 * 120.00417 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.58680 * 186.60320 * 23 14 13 40 40 H 1.09007 * 109.70634 * 66.25473 * 23 14 13 41 41 H 1.09003 * 109.49323 * 178.60390 * 24 10 9 42 42 H 1.08992 * 109.49603 * 298.66816 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0006 5 6 3.5691 -0.6398 0.0046 6 6 2.2862 -1.1109 -0.0006 7 6 1.8650 -2.5168 -0.0004 8 8 0.6848 -2.7983 0.0925 9 7 2.7856 -3.4962 -0.0976 10 6 2.3598 -4.8937 -0.2063 11 6 1.5006 -5.0688 -1.4601 12 6 1.5415 -5.2749 1.0295 13 6 2.3932 -5.0657 2.2856 14 7 3.6472 -5.8167 2.1371 15 6 4.0441 -6.7088 3.0972 16 1 3.3055 -7.2517 3.6684 17 6 5.3958 -6.9152 3.3366 18 7 6.2900 -6.1189 2.7902 19 14 5.9456 -8.3231 4.4342 20 1 4.7550 -9.0655 4.9209 21 1 6.8190 -9.2419 3.6606 22 1 6.6998 -7.7818 5.5932 23 6 4.4670 -5.5929 0.9385 24 6 3.5921 -5.7963 -0.3018 25 1 -0.3633 0.0785 1.0247 26 1 -0.3633 0.8481 -0.5804 27 1 -0.3633 -0.9267 -0.4443 28 1 1.9288 2.1080 0.0004 29 1 4.4673 -1.2395 0.0098 30 1 3.7303 -3.2758 -0.0956 31 1 2.0831 -4.7968 -2.3404 32 1 1.1841 -6.1087 -1.5412 33 1 0.6233 -4.4258 -1.3920 34 1 0.6519 -4.6474 1.0845 35 1 1.2452 -6.3216 0.9610 36 1 1.8513 -5.4283 3.1590 37 1 2.6146 -4.0053 2.4071 38 1 7.2345 -6.2629 2.9577 39 1 5.2936 -6.3034 0.9233 40 1 4.8595 -4.5760 0.9463 41 1 3.2765 -6.8381 -0.3577 42 1 4.1620 -5.5404 -1.1949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045494922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:18 Heat of formation + Delta-G solvation = 50.400238 kcal Electronic energy + Delta-G solvation = -24570.762311 eV Core-core repulsion = 21166.658709 eV Total energy + Delta-G solvation = -3404.103602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20265 -39.88231 -37.25729 -34.58100 -33.96242 -32.26170 -31.04555 -29.96221 -29.28265 -27.42849 -27.16767 -24.17016 -23.39526 -22.26433 -21.58269 -20.83577 -19.95639 -18.63845 -17.95565 -16.79473 -16.10549 -15.99969 -15.03692 -14.86751 -14.54664 -14.19543 -14.00067 -13.81208 -13.49282 -13.34925 -13.18077 -13.10602 -12.97100 -12.82419 -12.39322 -11.83082 -11.64812 -11.32346 -11.20131 -10.91197 -10.76112 -10.37576 -10.32855 -10.22249 -9.90689 -9.81268 -9.74802 -9.63530 -9.18205 -8.78575 -8.53761 -8.46378 -6.59297 -5.78441 -3.25669 1.36312 2.48243 2.86066 3.36681 3.44661 3.46630 3.49163 3.53155 4.48771 4.49736 4.63222 4.77321 5.04154 5.09484 5.29031 5.35384 5.36998 5.45622 5.47224 5.52182 5.60689 5.94477 6.03234 6.07391 6.18015 6.27904 6.34683 6.36651 6.46765 6.54462 6.68143 6.69781 6.83976 6.96648 6.97838 7.07033 7.31376 7.63094 7.76814 7.80720 7.89718 8.42868 8.48759 9.23446 9.84760 10.43388 11.29756 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004523 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.071462 B = 6188.880481 C = 6743.754370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.429 5.429 3 C 0.196 3.804 4 N -0.497 5.497 5 C 0.036 3.964 6 C -0.080 4.080 7 C 0.596 3.404 8 O -0.550 6.550 9 N -0.694 5.694 10 C 0.187 3.813 11 C -0.159 4.159 12 C -0.144 4.144 13 C 0.151 3.849 14 N -0.591 5.591 15 C -0.250 4.250 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.172 3.828 24 C -0.147 4.147 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.210 0.790 29 H 0.179 0.821 30 H 0.403 0.597 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.014 0.986 38 H 0.253 0.747 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 10.309 -9.182 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.110 5.110 3 C -0.086 4.086 4 N -0.215 5.215 5 C -0.118 4.118 6 C -0.197 4.197 7 C 0.382 3.618 8 O -0.430 6.430 9 N -0.344 5.344 10 C 0.102 3.898 11 C -0.217 4.217 12 C -0.183 4.183 13 C 0.024 3.976 14 N -0.314 5.314 15 C -0.380 4.380 16 H 0.081 0.919 17 C -0.194 4.194 18 N -0.551 5.551 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.046 3.954 24 C -0.187 4.187 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.226 0.774 29 H 0.196 0.804 30 H 0.239 0.761 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.091 0.909 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.927 10.581 -9.097 17.125 hybrid contribution 0.163 -0.969 0.635 1.170 sum -9.764 9.612 -8.462 16.104 Atomic orbital electron populations 1.22265 0.75486 1.05624 1.04045 1.45231 1.08199 1.05841 1.51706 1.25085 0.85708 0.93557 1.04209 1.70137 1.18965 1.12296 1.20137 1.22704 0.95488 0.91206 1.02372 1.20983 0.91446 0.89227 1.18021 1.16689 0.85774 0.82843 0.76501 1.90687 1.17178 1.83729 1.51369 1.45836 1.09452 1.06213 1.72901 1.20322 0.95392 0.79026 0.95088 1.22206 1.00641 1.02145 0.96725 1.22432 0.99117 1.01122 0.95671 1.20832 0.87990 0.94345 0.94410 1.43996 1.21403 1.46334 1.19636 1.19232 0.90629 1.14732 1.13401 0.91867 1.25145 0.96651 0.98628 0.98998 1.69955 1.00548 1.37483 1.47076 0.86206 0.78418 0.81875 0.80184 1.20295 1.21604 1.21680 1.20752 0.92819 0.99442 0.82393 1.22546 0.96160 0.99028 1.00917 0.90205 0.89814 0.87579 0.77374 0.80392 0.76122 0.93212 0.91991 0.91343 0.90615 0.91881 0.93207 0.96760 0.93674 0.89072 0.96589 0.90904 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.76 59.85 0.64 1.25 16 2 N -0.43 -5.15 3.17 -121.98 -0.39 -5.54 16 3 C 0.20 2.19 12.52 -90.57 -1.13 1.06 16 4 N -0.50 -7.06 11.20 -14.43 -0.16 -7.22 16 5 C 0.04 0.52 11.37 -17.48 -0.20 0.32 16 6 C -0.08 -1.16 6.91 -82.14 -0.57 -1.73 16 7 C 0.60 9.45 7.19 -12.82 -0.09 9.36 16 8 O -0.55 -9.46 11.09 5.20 0.06 -9.40 16 9 N -0.69 -10.90 4.09 -48.83 -0.20 -11.10 16 10 C 0.19 3.09 0.66 -131.78 -0.09 3.00 16 11 C -0.16 -2.32 8.40 37.16 0.31 -2.00 16 12 C -0.14 -2.65 4.66 -26.61 -0.12 -2.78 16 13 C 0.15 3.27 6.25 -3.71 -0.02 3.24 16 14 N -0.59 -14.47 2.99 -172.34 -0.51 -14.99 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 16 H 0.06 1.71 7.85 -52.48 -0.41 1.30 16 17 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 18 N -0.91 -25.64 11.03 55.49 0.61 -25.03 16 19 Si 0.90 21.53 29.57 -169.99 -5.03 16.51 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.17 3.84 4.97 -3.74 -0.02 3.83 16 24 C -0.15 -2.60 4.95 -26.63 -0.13 -2.73 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.11 1.13 6.36 -51.93 -0.33 0.80 16 28 H 0.21 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.18 2.27 7.46 -52.49 -0.39 1.88 16 30 H 0.40 6.06 6.21 -40.82 -0.25 5.80 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.06 6.35 -51.93 -0.33 0.73 16 34 H 0.08 1.41 6.03 -51.93 -0.31 1.10 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.01 0.33 7.75 -51.92 -0.40 -0.07 16 38 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.09 2.32 6.10 -51.93 -0.32 2.00 16 40 H 0.02 0.37 6.94 -51.93 -0.36 0.01 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -31.96 330.11 -8.34 -40.30 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.04 Total: 5.61 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -1.65 Total: 5.90 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.65 Total: -63.89 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.06 Total: -9.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.96 -8.34 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045494922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.699 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds