Wall clock time and date at job start Tue Mar 31 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34498 * 126.47565 * 2 1 4 4 N 1.30857 * 109.16595 * 180.02562 * 3 2 1 5 5 C 1.33315 * 109.68362 * 359.74774 * 4 3 2 6 6 C 1.36664 * 107.78841 * 0.40582 * 5 4 3 7 7 C 1.46763 * 126.84367 * 179.87096 * 6 5 4 8 8 O 1.21684 * 119.99999 * 174.66634 * 7 6 5 9 9 N 1.34773 * 120.00338 * 354.93915 * 7 6 5 10 10 C 1.46501 * 120.00109 * 184.93004 * 9 7 6 11 11 C 1.52995 * 109.46019 * 60.02677 * 10 9 7 12 12 C 1.53038 * 109.46134 * 300.06551 * 10 9 7 13 13 C 1.53193 * 109.31650 * 301.34884 * 12 10 9 14 14 N 1.46925 * 108.77499 * 305.36335 * 13 12 10 15 15 C 1.36936 * 120.63309 * 233.63122 * 14 13 12 16 16 H 1.08008 * 119.99756 * 31.55886 * 15 14 13 17 17 C 1.38809 * 120.00314 * 211.56331 * 15 14 13 18 18 N 1.31617 * 119.99921 * 10.13147 * 17 15 14 19 19 Si 1.86797 * 120.00302 * 190.12872 * 17 15 14 20 20 H 1.48502 * 109.47161 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46838 * 119.99632 * 19 17 15 22 22 H 1.48493 * 109.47291 * 240.00073 * 19 17 15 23 23 C 1.46927 * 118.73762 * 53.60388 * 14 13 12 24 24 C 1.53048 * 109.45853 * 180.02562 * 10 9 7 25 25 H 1.08998 * 109.46890 * 274.38285 * 1 2 3 26 26 H 1.08999 * 109.46948 * 34.38782 * 1 2 3 27 27 H 1.09002 * 109.46969 * 154.38563 * 1 2 3 28 28 H 1.07999 * 125.41374 * 0.02562 * 3 2 1 29 29 H 1.08000 * 126.10462 * 180.28523 * 5 4 3 30 30 H 0.97007 * 119.99919 * 4.93306 * 9 7 6 31 31 H 1.09006 * 109.46948 * 60.00285 * 11 10 9 32 32 H 1.09007 * 109.46684 * 179.97438 * 11 10 9 33 33 H 1.08990 * 109.47326 * 300.00127 * 11 10 9 34 34 H 1.09006 * 109.49608 * 61.29742 * 12 10 9 35 35 H 1.08997 * 109.49981 * 181.39291 * 12 10 9 36 36 H 1.08994 * 109.58870 * 185.57599 * 13 12 10 37 37 H 1.09008 * 109.70651 * 65.21487 * 13 12 10 38 38 H 0.97001 * 120.00417 * 179.97438 * 18 17 15 39 39 H 1.09006 * 109.58680 * 186.60320 * 23 14 13 40 40 H 1.09007 * 109.70634 * 66.25473 * 23 14 13 41 41 H 1.09003 * 109.49323 * 178.60390 * 24 10 9 42 42 H 1.08992 * 109.49603 * 298.66816 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0815 0.0000 4 7 3.5138 0.6922 -0.0006 5 6 3.5691 -0.6398 0.0046 6 6 2.2862 -1.1109 -0.0006 7 6 1.8650 -2.5168 -0.0004 8 8 0.6848 -2.7983 0.0925 9 7 2.7856 -3.4962 -0.0976 10 6 2.3598 -4.8937 -0.2063 11 6 1.5006 -5.0688 -1.4601 12 6 1.5415 -5.2749 1.0295 13 6 2.3932 -5.0657 2.2856 14 7 3.6472 -5.8167 2.1371 15 6 4.0441 -6.7088 3.0972 16 1 3.3055 -7.2517 3.6684 17 6 5.3958 -6.9152 3.3366 18 7 6.2900 -6.1189 2.7902 19 14 5.9456 -8.3231 4.4342 20 1 4.7550 -9.0655 4.9209 21 1 6.8190 -9.2419 3.6606 22 1 6.6998 -7.7818 5.5932 23 6 4.4670 -5.5929 0.9385 24 6 3.5921 -5.7963 -0.3018 25 1 -0.3633 0.0785 1.0247 26 1 -0.3633 0.8481 -0.5804 27 1 -0.3633 -0.9267 -0.4443 28 1 1.9288 2.1080 0.0004 29 1 4.4673 -1.2395 0.0098 30 1 3.7303 -3.2758 -0.0956 31 1 2.0831 -4.7968 -2.3404 32 1 1.1841 -6.1087 -1.5412 33 1 0.6233 -4.4258 -1.3920 34 1 0.6519 -4.6474 1.0845 35 1 1.2452 -6.3216 0.9610 36 1 1.8513 -5.4283 3.1590 37 1 2.6146 -4.0053 2.4071 38 1 7.2345 -6.2629 2.9577 39 1 5.2936 -6.3034 0.9233 40 1 4.8595 -4.5760 0.9463 41 1 3.2765 -6.8381 -0.3577 42 1 4.1620 -5.5404 -1.1949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045494922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:17 Heat of formation + Delta-G solvation = 31.049469 kcal Electronic energy + Delta-G solvation = -24571.601424 eV Core-core repulsion = 21166.658709 eV Total energy + Delta-G solvation = -3404.942714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.17958 -41.21599 -38.73944 -36.16118 -34.98271 -33.79431 -32.69869 -31.61748 -30.40096 -29.06542 -27.95750 -25.95090 -24.60071 -23.91253 -22.75826 -22.24993 -21.14986 -20.11205 -19.07709 -18.59235 -17.15982 -16.96914 -16.84846 -16.36046 -15.84593 -15.55431 -15.33253 -15.19309 -14.97952 -14.79911 -14.57927 -14.36407 -14.02935 -13.80800 -13.58856 -13.28373 -13.04521 -13.03807 -12.83208 -12.63403 -12.54561 -12.13527 -11.97419 -11.79484 -11.49747 -11.30396 -11.16485 -10.70645 -10.57366 -10.53184 -10.03426 -9.60101 -8.58546 -7.85458 -5.35871 0.32136 1.46398 1.48517 1.55644 1.58368 1.86879 2.33980 2.40527 2.51558 3.30417 3.53580 3.72241 3.79265 3.91938 3.99094 4.06321 4.12709 4.13841 4.40465 4.46534 4.50377 4.65162 4.71973 4.75545 4.80338 4.89394 4.94489 4.98059 5.11929 5.17801 5.23371 5.31007 5.36643 5.44214 5.51261 5.65367 5.67945 5.80415 6.13987 6.43466 6.56487 6.88746 7.18722 7.20794 7.87244 8.40434 9.19808 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.004523 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.071462 B = 6188.880481 C = 6743.754370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.431 5.431 3 C 0.216 3.784 4 N -0.532 5.532 5 C 0.030 3.970 6 C -0.105 4.105 7 C 0.596 3.404 8 O -0.566 6.566 9 N -0.695 5.695 10 C 0.190 3.810 11 C -0.148 4.148 12 C -0.131 4.131 13 C 0.154 3.846 14 N -0.606 5.606 15 C -0.265 4.265 16 H 0.059 0.941 17 C -0.043 4.043 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.178 3.822 24 C -0.132 4.132 25 H 0.085 0.915 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.257 0.743 29 H 0.181 0.819 30 H 0.405 0.595 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.002 0.998 38 H 0.251 0.749 39 H 0.058 0.942 40 H 0.006 0.994 41 H 0.071 0.929 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 11.168 -10.177 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.111 5.111 3 C -0.066 4.066 4 N -0.251 5.251 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.384 3.616 8 O -0.448 6.448 9 N -0.345 5.345 10 C 0.105 3.895 11 C -0.206 4.206 12 C -0.171 4.171 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.395 4.395 16 H 0.076 0.924 17 C -0.239 4.239 18 N -0.577 5.577 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.214 1.214 22 H -0.220 1.220 23 C 0.053 3.947 24 C -0.172 4.172 25 H 0.103 0.897 26 H 0.142 0.858 27 H 0.104 0.896 28 H 0.272 0.728 29 H 0.198 0.802 30 H 0.241 0.759 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.058 11.441 -10.106 18.849 hybrid contribution 0.473 -1.127 0.984 1.569 sum -10.585 10.313 -9.122 17.367 Atomic orbital electron populations 1.22451 0.73678 1.06385 1.04998 1.45476 1.09313 1.05224 1.51110 1.26011 0.84735 0.94982 1.00919 1.70146 1.20907 1.12092 1.21910 1.22859 0.95744 0.91718 1.02080 1.20825 0.92093 0.89224 1.20105 1.16851 0.85441 0.83444 0.75892 1.90671 1.17729 1.84127 1.52230 1.45798 1.09657 1.05961 1.73098 1.20244 0.94778 0.79280 0.95242 1.22091 0.99939 1.02758 0.95833 1.22273 0.98641 1.01183 0.94973 1.20830 0.87418 0.93087 0.95878 1.44218 1.22277 1.46389 1.20065 1.19487 0.90867 1.15208 1.13951 0.92357 1.25823 0.96674 1.00879 1.00478 1.70104 1.00485 1.38883 1.48222 0.85235 0.77929 0.79171 0.78269 1.19480 1.21353 1.22008 1.20593 0.92590 0.97768 0.83758 1.22343 0.96040 0.99366 0.99423 0.89654 0.85758 0.89566 0.72753 0.80176 0.75882 0.91671 0.90836 0.92109 0.90577 0.91799 0.94205 0.98044 0.94018 0.92368 0.97597 0.91013 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.76 127.77 1.37 2.38 16 2 N -0.43 -9.51 3.17 -539.82 -1.71 -11.23 16 3 C 0.22 4.23 12.52 180.33 2.26 6.49 16 4 N -0.53 -14.39 11.20 -199.56 -2.24 -16.62 16 5 C 0.03 0.86 11.37 84.10 0.96 1.81 16 6 C -0.11 -2.99 6.91 40.01 0.28 -2.71 16 7 C 0.60 18.66 7.19 86.47 0.62 19.28 16 8 O -0.57 -19.17 11.09 -4.30 -0.05 -19.22 16 9 N -0.69 -21.54 4.09 -426.64 -1.74 -23.28 16 10 C 0.19 6.07 0.66 3.63 0.00 6.08 16 11 C -0.15 -3.99 8.40 71.98 0.60 -3.39 16 12 C -0.13 -4.79 4.66 30.67 0.14 -4.64 16 13 C 0.15 6.78 6.25 86.36 0.54 7.32 16 14 N -0.61 -30.21 2.99 -699.17 -2.09 -32.30 16 15 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 16 H 0.06 3.21 7.85 -2.91 -0.02 3.19 16 17 C -0.04 -2.36 5.06 84.86 0.43 -1.93 16 18 N -0.93 -53.78 11.03 21.65 0.24 -53.54 16 19 Si 0.97 44.73 29.57 68.60 2.03 46.76 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 C 0.18 8.09 4.97 86.35 0.43 8.52 16 24 C -0.13 -4.55 4.95 30.66 0.15 -4.40 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.09 1.73 6.36 -2.39 -0.02 1.72 16 28 H 0.26 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.18 4.70 7.46 -2.91 -0.02 4.68 16 30 H 0.40 12.19 6.21 -92.70 -0.58 11.61 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.77 6.35 -2.39 -0.02 1.75 16 34 H 0.08 2.80 6.03 -2.38 -0.01 2.79 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 37 H 0.00 0.08 7.75 -2.38 -0.02 0.06 16 38 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.06 3.03 6.10 -2.38 -0.01 3.02 16 40 H 0.01 0.28 6.94 -2.38 -0.02 0.26 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -69.82 330.11 3.49 -66.33 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.46 Total: 22.12 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 8.59 Total: 20.99 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -7.54 Total: -136.98 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.82 3.49 -66.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045494922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.378 kcal (2) G-P(sol) polarization free energy of solvation -69.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds